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Single-particle cryo-EM at atomic resolution
Takanori Nakane, Abhay Kotecha, Andrija Sente, Greg McMullan, Simonas Masiulis, Patricia M. G. E. Brown, Ioana T. Grigoras, Lina Malinauskaite, Tomas Malinauskas, Jonas Miehling, Tomasz Uchański, Lingbo Yu, Dimple Karia, Evgeniya V. Pechnikova, Erwin de Jong, Jeroen Keizer, Maarten Bischoff, Jamie McCormack, Peter Tiemeijer, Steven W. Hardwick, Dimitri Y. Chirgadze, Garib Murshudov, A. Radu Aricescu, Sjors H. W. Scheres
Nature Vol. 587 No. 7832 p. 152-156 2020年11月5日 研究論文(学術雑誌)
出版者・発行元:Springer Science and Business Media {LLC}
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New tools for automated high-resolution cryo-EM structure determination in RELION-3
Jasenko Zivanov, Takanori Nakane, Björn O Forsberg, Dari Kimanius, Wim JH Hagen, Erik Lindahl, Sjors HW Scheres
eLife Vol. 7 2018年11月9日 研究論文(学術雑誌)
出版者・発行元:{eLife} Sciences Publications, Ltd
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A three-dimensional movie of structural changes in bacteriorhodopsin
Eriko Nango, Antoine Royant, Minoru Kubo, Takanori Nakane, Cecilia Wickstrand, Tetsunari Kimura, Tomoyuki Tanaka, Kensuke Tono, Changyong Song, Rie Tanaka, Toshi Arima, Ayumi Yamashita, Jun Kobayashi, Toshiaki Hosaka, Eiichi Mizohata, Przemyslaw Nogly, Michihiro Sugahara, Daewoong Nam, Takashi Nomura, Tatsuro Shimamura, Dohyun Im, Takaaki Fujiwara, Yasuaki Yamanaka, Byeonghyun Jeon, Tomohiro Nishizawa, Kazumasa Oda, Masahiro Fukuda, Rebecka Andersson, Petra Båth, Robert Dods, Jan Davidsson, Shigeru Matsuoka, Satoshi Kawatake, Michio Murata, Osamu Nureki, Shigeki Owada, Takashi Kameshima, Takaki Hatsui, Yasumasa Joti, Gebhard Schertler, Makina Yabashi, Ana-Nicoleta Bondar, Jörg Standfuss, Richard Neutze, So Iwata
Science Vol. 354 No. 6319 p. 1552-1557 2016年12月23日 研究論文(学術雑誌)
出版者・発行元:American Association for the Advancement of Science (AAAS)
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Membrane protein structure determination by SAD, SIR, or SIRAS phasing in serial femtosecond crystallography using an iododetergent
Takanori Nakane, Shinya Hanashima, Mamoru Suzuki, Haruka Saiki, Taichi Hayashi, Keisuke Kakinouchi, Shigeru Sugiyama, Satoshi Kawatake, Shigeru Matsuoka, Nobuaki Matsumori, Eriko Nango, Jun Kobayashi, Tatsuro Shimamura, Kanako Kimura, Chihiro Mori, Naoki Kunishima, Michihiro Sugahara, Yoko Takakyu, Shigeyuki Inoue, Tetsuya Masuda, Toshiaki Hosaka, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Takaki Hatsui, Makina Yabashi, Tsuyoshi Inoue, Osamu Nureki, So Iwata, Michio Murata, Eiichi Mizohata
Proceedings of the National Academy of Sciences Vol. 113 No. 46 p. 13039-13044 2016年11月15日 研究論文(学術雑誌)
出版者・発行元:Proceedings of the National Academy of Sciences
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Data processing pipeline for serial femtosecond crystallography at SACLA
Takanori Nakane, Yasumasa Joti, Kensuke Tono, Makina Yabashi, Eriko Nango, So Iwata, Ryuichiro Ishitani, Osamu Nureki
Journal of Applied Crystallography Vol. 49 No. 3 p. 1035-1041 2016年4月 研究論文(学術雑誌)
出版者・発行元:International Union of Crystallography ({IUCr})
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Native sulfur/chlorine SAD phasing for serial femtosecond crystallography
Takanori Nakane, Changyong Song, Mamoru Suzuki, Eriko Nango, Jun Kobayashi, Tetsuya Masuda, Shigeyuki Inoue, Eiichi Mizohata, Toru Nakatsu, Tomoyuki Tanaka, Rie Tanaka, Tatsuro Shimamura, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Takaki Hatsui, Makina Yabashi, Osamu Nureki, So Iwata, Michihiro Sugahara
Acta Crystallographica Section D Biological Crystallography Vol. 71 No. 12 p. 2519-2525 2015年12月1日 研究論文(学術雑誌)
出版者・発行元:International Union of Crystallography (IUCr)
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Application of Multiple Small-wedge Synchrotron Crystallography for Post-reaction Structural Characterization of a Stimuli-responsive Small-molecule Crystal
Toshiyuki Sasaki, Takanori Nakane, Kazuyoshi Takimoto, Kouhei Ichiyanagi, Yuki Mori, Seiki Baba, Naoki Sakai, Genji Kurisu, Mikiji Miyata, Takahiro Uno, Takahito Itoh
Bulletin of the Chemical Society of Japan 2025年6月 研究論文(学術雑誌)
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NMR-Based Rational Drug Design of G:G Mismatch DNA Binding Ligand Trapping Transient Complex via Disruption of a Key Allosteric Interaction
Shuhei Sakurabayashi, Kyoko Furuita, Takeshi Yamada, Noriaki Sugiura, Makoto Nomura, Takanori Nakane, Akihiro Kawamoto, Genji Kurisu, Yohei Miyanoiri, Toshimichi Fujiwara, Kazuhiko Nakatani, Chojiro Kojima
Journal of the American Chemical Society 2025年4月17日 研究論文(学術雑誌)
出版者・発行元:American Chemical Society (ACS)
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Tuning of a Hydrogen-Bonded Organic Framework by Liquid-Assisted Mechanosynthesis between Trans-Aconitic Acid and Isonicotinamide.
Diptajyoti Gogoi, Toshiyuki Sasaki, Nabadeep Kalita, Tapaswini Sethi, Kouhei Ichiyanagi, Takanori Nakane, Akihiro Kawamoto, Dinabandhu Das, Genji Kurisu, Ranjit Thakuria
Chemistry (Weinheim an der Bergstrasse, Germany) 2024年12月11日 研究論文(学術雑誌)
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Analysis of Solid-State Emission of the p-Bis(2,2-dicyanovinyl)benzene Analogue through Combined X-ray, Synchrotron, and Microcrystal Electron Diffraction
Poonam Deka, Shilpi Jaiswal, Parishmita Sarma, Debajit Bora, Takanori Nakane, Akihiro Kawamoto, Yusuke Ohnishi, Genji Kurisu, Sanjeev Pran Mahanta, Khaled Althubeiti, Kouhei Ichiyanagi, Toshiyuki Sasaki, Ranjit Thakuria
Crystal Growth & Design 2024年8月23日 研究論文(学術雑誌)
出版者・発行元:American Chemical Society (ACS)
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Real-time observation of a metal complex-driven reaction intermediate using a porous protein crystal and serial femtosecond crystallography
Basudev Maity, Mitsuo Shoji, Fangjia Luo, Takanori Nakane, Satoshi Abe, Shigeki Owada, Jungmin Kang, Kensuke Tono, Rie Tanaka, Thuc Toan Pham, Mariko Kojima, Yuki Hishikawa, Junko Tanaka, Jiaxin Tian, Misaki Nagama, Taiga Suzuki, Hiroki Noya, Yuto Nakasuji, Asuka Asanuma, Xinchen Yao, So Iwata, Yasuteru Shigeta, Eriko Nango, Takafumi Ueno
Nature Communications Vol. 15 No. 1 2024年6月29日 研究論文(学術雑誌)
出版者・発行元:Springer Science and Business Media LLC
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Data-driven regularization lowers the size barrier of cryo-EM structure determination.
Dari Kimanius, Kiarash Jamali, Max E Wilkinson, Sofia Lövestam, Vaithish Velazhahan, Takanori Nakane, Sjors H W Scheres
Nature Methods 2024年6月11日 研究論文(学術雑誌)
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Versatile Biaryls and Fused Aromatics through Oxidative Coupling of Hydroquinones with (Hetero)Arenes
Takaaki Aijima, Rina Ueda, Takanori Nakane, Fumiaki Makino, Yusuke Ohnishi, Jin Tokunaga, Keiichiro Nakajima, Shinichiro Kamino, Genji Kurisu, Keiichi Namba, Hiroki Nakata, Kaiki Mogi, Hironao Sajiki, Shuji Akai, Yoshinari Sawama
ChemistrySelect Vol. 9 No. 15 2024年4月15日 研究論文(学術雑誌)
出版者・発行元:Wiley
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Mechanically-sensitive fluorochromism by molecular domino transformation in a Schiff base crystal
Toshiyuki Sasaki, Takanori Nakane, Akihiro Kawamoto, Yakai Zhao, Yushi Fujimoto, Tomohiro Nishizawa, Nabadeep Kalita, Seiji Tsuzuki, Fuyuki Ito, Upadrasta Ramamurty, Ranjit Thakuria, Genji Kurisu
Journal of Materials Chemistry C 2024年1月 研究論文(学術雑誌)
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MicroED:どんな試料に適しているか
中根 崇智
PEPTIDE NEWSLETTER JAPAN No. 130 2023年10月 研究論文(研究会,シンポジウム資料等)
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Structure Elucidation of Olanzapine Molecular Salts by Combining Mechanochemistry and Micro-Electron Diffraction
Diptajyoti Gogoi, Toshiyuki Sasaki, Takanori Nakane, Akihiro Kawamoto, Hironobu Hojo, Genji Kurisu, Ranjit Thakuria
Crystal Growth & Design Vol. 23 No. 8 p. 5821-5826 2023年6月27日 研究論文(学術雑誌)
出版者・発行元:American Chemical Society (ACS)
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Microcrystal electron diffraction (MicroED) structure determination of a mechanochemically synthesized co-crystal not affordable from solution crystallization
Toshiyuki Sasaki, Takanori Nakane, Akihiro Kawamoto, Tomohiro Nishizawa, Genji Kurisu
CrystEngComm Vol. 25 p. 352-356 2022年12月 研究論文(学術雑誌)
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Conformational alterations in unidirectional ion transport of a light-driven chloride pump revealed using X-ray free electron lasers.
Toshiaki Hosaka, Takashi Nomura, Minoru Kubo, Takanori Nakane, Luo Fangjia, Shun-Ichi Sekine, Takuhiro Ito, Kazutaka Murayama, Kentaro Ihara, Haruhiko Ehara, Kazuhiro Kashiwagi, Kazushige Katsura, Ryogo Akasaka, Tamao Hisano, Tomoyuki Tanaka, Rie Tanaka, Toshi Arima, Ayumi Yamashita, Michihiro Sugahara, Hisashi Naitow, Yoshinori Matsuura, Susumu Yoshizawa, Kensuke Tono, Shigeki Owada, Osamu Nureki, Tomomi Kimura-Someya, So Iwata, Eriko Nango, Mikako Shirouzu
Proceedings of the National Academy of Sciences of the United States of America Vol. 119 No. 9 2022年3月1日 研究論文(学術雑誌)
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低温電子顕微鏡単粒子解析法による高分解能構造解析
中根崇智
日本結晶学会誌 Vol. 64 No. 2 2022年 研究論文(学術雑誌)
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Crystal structure of CmABCB1 multi-drug exporter in lipidic mesophase revealed by LCP-SFX
Dongqing Pan, Ryo Oyama, Tomomi Sato, Takanori Nakane, Ryo Mizunuma, Keita Matsuoka, Yasumasa Joti, Kensuke Tono, Eriko Nango, So Iwata, Toru Nakatsu, Hiroaki Kato
IUCrJ Vol. 9 No. 1 p. 134-145 2022年1月1日 研究論文(学術雑誌)
出版者・発行元:International Union of Crystallography (IUCr)
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New tools for automated cryo-EM single-particle analysis in RELION-4.0.
Dari Kimanius, Liyi Dong, Grigory Sharov, Takanori Nakane, Sjors H W Scheres
The Biochemical journal Vol. 478 No. 24 p. 4169-4185 2021年12月22日 研究論文(学術雑誌)
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Pink beam crystallography demonstrated in SFX
Takanori Nakane
IUCrJ Vol. 8 No. 6 p. 853-854 2021年11月1日 研究論文(学術雑誌)
出版者・発行元:International Union of Crystallography ({IUCr})
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Heavy Atom Detergent/Lipid Combined X-ray Crystallography for Elucidating the Structure-Function Relationships of Membrane Proteins
Shinya Hanashima, Takanori Nakane, Eiichi Mizohata
Membranes 2021年10月 研究論文(学術雑誌)
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Capturing structural changes of the S1 to S2 transition of photosystem II using time-resolved serial femtosecond crystallography
Hongjie Li, Yoshiki Nakajima, Takashi Nomura, Michihiro Sugahara, Shinichiro Yonekura, Siu Kit Chan, Takanori Nakane, Takahiro Yamane, Yasufumi Umena, Mamoru Suzuki, Tetsuya Masuda, Taiki Motomura, Hisashi Naitow, Yoshinori Matsuura, Tetsunari Kimura, Kensuke Tono, Shigeki Owada, Yasumasa Joti, Rie Tanaka, Eriko Nango, Fusamichi Akita, Minoru Kubo, So Iwata, Jian-Ren Shen, Michihiro Suga
IUCrJ Vol. 8 No. 3 p. 431-443 2021年5月1日 研究論文(学術雑誌)
出版者・発行元:International Union of Crystallography ({IUCr})
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Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin
Kazumasa Oda, Takashi Nomura, Takanori Nakane, Keitaro Yamashita, Keiichi Inoue, Shota Ito, Johannes Vierock, Kunio Hirata, Andrés D Maturana, Kota Katayama, Tatsuya Ikuta, Itsuki Ishigami, Tamaki Izume, Rie Umeda, Ryuun Eguma, Satomi Oishi, Go Kasuya, Takafumi Kato, Tsukasa Kusakizako, Wataru Shihoya, Hiroto Shimada, Tomoyuki Takatsuji, Mizuki Takemoto, Reiya Taniguchi, Atsuhiro Tomita, Ryoki Nakamura, Masahiro Fukuda, Hirotake Miyauchi, Yongchan Lee, Eriko Nango, Rie Tanaka, Tomoyuki Tanaka, Michihiro Sugahara, Tetsunari Kimura, Tatsuro Shimamura, Takaaki Fujiwara, Yasuaki Yamanaka, Shigeki Owada, Yasumasa Joti, Kensuke Tono, Ryuichiro Ishitani, Shigehiko Hayashi, Hideki Kandori, Peter Hegemann, So Iwata, Minoru Kubo, Tomohiro Nishizawa, Osamu Nureki
eLife Vol. 10 2021年3月23日 研究論文(学術雑誌)
出版者・発行元:{eLife} Sciences Publications, Ltd
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Multi-body Refinement of Images in RELION
Takanori Nakane, Sjors H. W. Scheres
Methods in molecular biology p. 145-160 2021年 論文集(書籍)内論文
出版者・発行元:Springer US
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Exploiting prior knowledge about biological macromolecules in cryo-EM structure determination
Dari Kimanius, Gustav Zickert, Takanori Nakane, Jonas Adler, Sebastian Lunz, Carola-Bibiane Schönlieb, Ozan Öktem, Sjors H. W. Scheres
IUCrJ Vol. 8 No. 1 p. 60-75 2021年1月1日 研究論文(学術雑誌)
出版者・発行元:International Union of Crystallography ({IUCr})
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Structures and distributions of SARS-CoV-2 spike proteins on intact virions
Zunlong Ke, Joaquin Oton, Kun Qu, Mirko Cortese, Vojtech Zila, Lesley McKeane, Takanori Nakane, Jasenko Zivanov, Christopher J. Neufeldt, Berati Cerikan, John M. Lu, Julia Peukes, Xiaoli Xiong, Hans-Georg Kräusslich, Sjors H. W. Scheres, Ralf Bartenschlager, John A. G. Briggs
Nature Vol. 588 No. 7838 p. 498-502 2020年12月17日 研究論文(学術雑誌)
出版者・発行元:Springer Science and Business Media {LLC}
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Isoprenoid-chained lipid EROCOC17+4: a new matrix for membrane protein crystallization and a crystal delivery medium in serial femtosecond crystallography
Kentaro Ihara, Masakatsu Hato, Takanori Nakane, Keitaro Yamashita, Tomomi Kimura-Someya, Toshiaki Hosaka, Yoshiko Ishizuka-Katsura, Rie Tanaka, Tomoyuki Tanaka, Michihiro Sugahara, Kunio Hirata, Masaki Yamamoto, Osamu Nureki, Kensuke Tono, Eriko Nango, So Iwata, Mikako Shirouzu
Scientific Reports Vol. 10 No. 1 2020年12月 研究論文(学術雑誌)
出版者・発行元:Springer Science and Business Media LLC
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Structure of the dopamine D2 receptor in complex with the antipsychotic drug spiperone
Dohyun Im, Asuka Inoue, Takaaki Fujiwara, Takanori Nakane, Yasuaki Yamanaka, Tomoko Uemura, Chihiro Mori, Yuki Shiimura, Kanako Terakado Kimura, Hidetsugu Asada, Norimichi Nomura, Tomoyuki Tanaka, Ayumi Yamashita, Eriko Nango, Kensuke Tono, Francois Marie Ngako Kadji, Junken Aoki, So Iwata, Tatsuro Shimamura
Nature Communications Vol. 11 No. 1 2020年12月 研究論文(学術雑誌)
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Mitigating local over-fitting during single particle reconstruction with SIDESPLITTER
Kailash Ramlaul, Colin M. Palmer, Takanori Nakane, Christopher H.S. Aylett
Journal of Structural Biology Vol. 211 No. 2 p. 107545-107545 2020年8月 研究論文(学術雑誌)
出版者・発行元:Elsevier BV
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欧州における放射光施設と構造生物学データベースの動向
Takanori Nakane
実験医学 2020年3月18日 論文集(書籍)内論文
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A tool for visualizing protein motions in time-resolved crystallography
Cecilia Wickstrand, Gergely Katona, Takanori Nakane, Przemyslaw Nogly, Joerg Standfuss, Eriko Nango, Richard Neutze
Structural Dynamics 2020年3月 研究論文(学術雑誌)
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Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals
Alexander M. Wolff, Iris D. Young, Raymond G. Sierra, Aaron S. Brewster, Michael W. Martynowycz, Eriko Nango, Michihiro Sugahara, Takanori Nakane, Kazutaka Ito, Andrew Aquila, Asmit Bhowmick, Justin T. Biel, Sergio Carbajo, Aina E. Cohen, Saul Cortez, Ana Gonzalez, Tomoya Hino, Dohyun Im, Jake D. Koralek, Minoru Kubo, Tomas S. Lazarou, Takashi Nomura, Shigeki Owada, Avi J. Samelson, Tomoyuki Tanaka, Rie Tanaka, Erin M. Thompson, Henry van den Bedem, Rahel A. Woldeyes, Fumiaki Yumoto, Wei Zhao, Kensuke Tono, Sebastien Boutet, So Iwata, Tamir Gonen, Nicholas K. Sauter, James S. Fraser, Michael C. Thompson
IUCrJ Vol. 7 No. 2 p. 306-323 2020年3月1日 研究論文(学術雑誌)
出版者・発行元:International Union of Crystallography ({IUCr})
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Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1
Jasenko Zivanov, Takanori Nakane, Sjors H. W. Scheres
IUCrJ Vol. 7 No. 2 p. 253-267 2020年3月1日 研究論文(学術雑誌)
出版者・発行元:International Union of Crystallography ({IUCr})
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High-viscosity sample-injection device for serial femtosecond crystallography at atmospheric pressure
Yoshiaki Shimazu, Kensuke Tono, Tomoyuki Tanaka, Yasuaki Yamanaka, Takanori Nakane, Chihiro Mori, Kanako Terakado Kimura, Takaaki Fujiwara, Michihiro Sugahara, Rie Tanaka, R. Bruce Doak, Tatsuro Shimamura, So Iwata, Eriko Nango, Makina Yabashi
Journal of Applied Crystallography Vol. 52 No. 6 p. 1280-1288 2019年12月1日 研究論文(学術雑誌)
出版者・発行元:International Union of Crystallography ({IUCr})
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Improvement of Production and Isolation of Human Neuraminidase-1 in Cellulo Crystals
Kotaro Koiwai, Jun Tsukimoto, Tetsuya Higashi, Fumitaka Mafun{\'{e } }, Ken Miyajima, Takanori Nakane, Naohiro Matsugaki, Ryuichi Kato, Serena Sirigu, Arjen Jakobi, Matthias Wilmanns, Michihiro Sugahara, Tomoyuki Tanaka, Kensuke Tono, Yasumasa Joti, Makina Yabashi, Osamu Nureki, Eiichi Mizohata, Toru Nakatsu, Eriko Nango, So Iwata, Leonard M. G. Chavas, Toshiya Senda, Kohji Itoh, Fumiaki Yumoto
ACS Applied Bio Materials Vol. 2 No. 11 p. 4941-4952 2019年11月18日 研究論文(学術雑誌)
出版者・発行元:American Chemical Society ({ACS})
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Toward G protein-coupled receptor structure-based drug design using X-ray lasers
Andrii Ishchenko, Benjamin Stauch, Gye Won Han, Alexander Batyuk, Anna Shiriaeva, Chufeng Li, Nadia Zatsepin, Uwe Weierstall, Wei Liu, Eriko Nango, Takanori Nakane, Rie Tanaka, Kensuke Tono, Yasumasa Joti, So Iwata, Isabel Moraes, Cornelius Gati, Vadim Cherezov
IUCrJ Vol. 6 No. 6 p. 1106-1119 2019年11月1日 研究論文(学術雑誌)
出版者・発行元:International Union of Crystallography (IUCr)
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CryoTEM with a Cold Field Emission Gun That Moves Structural Biology into a New Stage
Takayuki Kato, Fumiaki Makino, Takanori Nakane, Naoya Terahara, Takeshi Kaneko, Yuko Shimizu, Sohei Motoki, Isamu Ishikawa, Koji Yonekura, Keiichi Namba
Microscopy and Microanalysis Vol. 25 No. S2 p. 998-999 2019年8月 研究論文(学術雑誌)
出版者・発行元:Cambridge University Press ({CUP})
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Cryo-EM structure of the human L-type amino acid transporter 1 in complex with glycoprotein CD98hc
Yongchan Lee, Pattama Wiriyasermkul, Chunhuan Jin, Lili Quan, Ryuichi Ohgaki, Suguru Okuda, Tsukasa Kusakizako, Tomohiro Nishizawa, Kazumasa Oda, Ryuichiro Ishitani, Takeshi Yokoyama, Takanori Nakane, Mikako Shirouzu, Hitoshi Endou, Shushi Nagamori, Yoshikatsu Kanai, Osamu Nureki
Nature Structural & Molecular Biology Vol. 26 No. 6 p. 510-517 2019年6月 研究論文(学術雑誌)
出版者・発行元:Springer Science and Business Media LLC
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Crystal structure of plant vacuolar iron transporter VIT1
Takafumi Kato, Kaoru Kumazaki, Miki Wada, Reiya Taniguchi, Takanori Nakane, Keitaro Yamashita, Kunio Hirata, Ryuichiro Ishitani, Koichi Ito, Tomohiro Nishizawa, Osamu Nureki
Nature Plants Vol. 5 No. 3 p. 308-315 2019年3月11日 研究論文(学術雑誌)
出版者・発行元:Springer Science and Business Media {LLC}
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Ligand binding to human prostaglandin E receptor EP4 at the lipid-bilayer interface
Yosuke Toyoda, Kazushi Morimoto, Ryoji Suno, Shoichiro Horita, Keitaro Yamashita, Kunio Hirata, Yusuke Sekiguchi, Satoshi Yasuda, Mitsunori Shiroishi, Tomoko Shimizu, Yuji Urushibata, Yuta Kajiwara, Tomoaki Inazumi, Yunhon Hotta, Hidetsugu Asada, Takanori Nakane, Yuki Shiimura, Tomoya Nakagita, Kyoshiro Tsuge, Suguru Yoshida, Tomoko Kuribara, Takamitsu Hosoya, Yukihiko Sugimoto, Norimichi Nomura, Miwa Sato, Takatsugu Hirokawa, Masahiro Kinoshita, Takeshi Murata, Kiyoshi Takayama, Masaki Yamamoto, Shuh Narumiya, So Iwata, Takuya Kobayashi
Nature Chemical Biology Vol. 15 No. 1 p. 18-26 2019年1月 研究論文(学術雑誌)
出版者・発行元:Springer Science and Business Media LLC
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Recent Developments of Single Particle Analysis with Cryo-electron Microscopy
Takanori NAKANE
Nihon Kessho Gakkaishi Vol. 60 No. 5-6 p. 230-232 2018年12月15日 研究論文(学術雑誌)
出版者・発行元:The Crystallographic Society of Japan
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Crystal structure of the Agrobacterium tumefaciens type VI effector–immunity complex
Satoshi Fukuhara, Takanori Nakane, Keitaro Yamashita, Ryohei Ishii, Ryuichiro Ishitani, Osamu Nureki
Acta Crystallographica Section F Structural Biology Communications Vol. 74 No. 12 p. 810-816 2018年12月1日 研究論文(学術雑誌)
出版者・発行元:International Union of Crystallography ({IUCr})
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Cryo-EM structures of the human volume-regulated anion channel LRRC8
Go Kasuya, Takanori Nakane, Takeshi Yokoyama, Yanyan Jia, Masato Inoue, Kengo Watanabe, Ryoki Nakamura, Tomohiro Nishizawa, Tsukasa Kusakizako, Akihisa Tsutsumi, Haruaki Yanagisawa, Naoshi Dohmae, Motoyuki Hattori, Hidenori Ichijo, Zhiqiang Yan, Masahide Kikkawa, Mikako Shirouzu, Ryuichiro Ishitani, Osamu Nureki
Nature Structural & Molecular Biology Vol. 25 No. 9 p. 797-804 2018年9月20日 研究論文(学術雑誌)
出版者・発行元:Springer Nature
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Time-resolved serial femtosecond crystallography studies at an X-ray free electron laser reveals structural changes in bacteriorhodopsin
Richard Neutze, Eriko Nango, Tomoyuki Tanaka, Takanori Nakane, So Iwata, Antoine Royant, Jörg St, fuss, Przemyslaw Nogly, Cecilia Wickstr
Biochimica et Biophysica Acta (BBA) - Bioenergetics Vol. 1859 2018年9月 研究論文(学術雑誌)
出版者・発行元:Elsevier {BV}
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Structural basis for light control of cell development revealed by crystal structures of a myxobacterial phytochrome
Nicole C. Woitowich, Andrei S. Halavaty, Patricia Waltz, Christopher Kupitz, Joseph Valera, Gregory Tracy, Kevin D. Gallagher, Elin Claesson, Takanori Nakane, Suraj Pandey, Garrett Nelson, Rie Tanaka, Eriko Nango, Eiichi Mizohata, Shigeki Owada, Kensure Tono, Yasumasa Joti, Angela C. Nugent, Hardik Patel, Ayesha Mapara, James Hopkins, Phu Duong, Dorina Bizhga, Svetlana E. Kovaleva, Rachael St. Peter, Cynthia N. Hernandez, Wesley B. Ozarowski, Shatabdi Roy-Chowdhuri, Jay-How Yang, Petra Edlund, Heikki Takala, Janne Ihalainen, Jennifer Brayshaw, Tyler Norwood, Ishwor Poudyal, Petra Fromme, John C. H. Spence, Keith Moffat, Sebastian Westenhoff, Marius Schmidt, Emina A. Stojković
IUCrJ Vol. 5 No. 5 p. 619-634 2018年9月1日 研究論文(学術雑誌)
出版者・発行元:International Union of Crystallography ({IUCr})
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Characterisation of molecular motions in cryo-EM single-particle data by multi-body refinement in RELION
Takanori Nakane, Dari Kimanius, Erik Lindahl, Sjors HW Scheres
eLife Vol. 7 2018年6月1日 研究論文(学術雑誌)
出版者・発行元:{eLife} Sciences Organisation, Ltd.
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Serial femtosecond crystallography at the SACLA: breakthrough to dynamic structural biology
Eiichi Mizohata, Takanori Nakane, Yohta Fukuda, Eriko Nango, So Iwata
Biophysical Reviews Vol. 10 No. 2 p. 209-218 2018年4月1日 研究論文(学術雑誌)
出版者・発行元:Springer Verlag
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Crystal Structures of Human Orexin 2 Receptor Bound to the Subtype-Selective Antagonist EMPA
Ryoji Suno, Kanako Terakado Kimura, Takanori Nakane, Keitaro Yamashita, Junmei Wang, Takaaki Fujiwara, Yasuaki Yamanaka, Dohyun Im, Shoichiro Horita, Hirokazu Tsujimoto, Maki S. Tawaramoto, Takatsugu Hirokawa, Eriko Nango, Kensuke Tono, Takashi Kameshima, Takaki Hatsui, Yasumasa Joti, Makina Yabashi, Keiko Shimamoto, Masaki Yamamoto, Daniel M. Rosenbaum, So Iwata, Tatsuro Shimamura, Takuya Kobayashi
Structure Vol. 26 No. 1 p. 7-19.e5 2018年1月 研究論文(学術雑誌)
出版者・発行元:Elsevier BV
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XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction
Jessica L. Thomaston, Rahel A. Woldeyes, Takanori Nakane, Ayumi Yamashita, Tomoyuki Tanaka, Kotaro Koiwai, Aaron S. Brewster, Benjamin A. Barad, Yujie Chen, Thomas Lemmin, Monarin Uervirojnangkoorn, Toshi Arima, Jun Kobayashi, Tetsuya Masuda, Mamoru Suzuki, Michihiro Sugahara, Nicholas K. Sauter, Rie Tanaka, Osamu Nureki, Kensuke Tono, Yasumasa Joti, Eriko Nango, So Iwata, Fumiaki Yumoto, James S. Fraser, William F. DeGrado
Proceedings of the National Academy of Sciences Vol. 114 No. 51 p. 13357-13362 2017年12月19日 研究論文(学術雑誌)
出版者・発行元:Proceedings of the National Academy of Sciences
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Structural basis for xenobiotic extrusion by eukaryotic MATE transporter
Hirotake Miyauchi, Satomi Moriyama, Tsukasa Kusakizako, Kaoru Kumazaki, Takanori Nakane, Keitaro Yamashita, Kunio Hirata, Naoshi Dohmae, Tomohiro Nishizawa, Koichi Ito, Takaaki Miyaji, Yoshinori Moriyama, Ryuichiro Ishitani, Osamu Nureki
Nature Communications Vol. 8 No. 1 2017年12月 研究論文(学術雑誌)
出版者・発行元:Springer Nature
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Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate
Takehiko Tosha, Takashi Nomura, Takuma Nishida, Naoya Saeki, Kouta Okubayashi, Raika Yamagiwa, Michihiro Sugahara, Takanori Nakane, Keitaro Yamashita, Kunio Hirata, Go Ueno, Tetsunari Kimura, Tamao Hisano, Kazumasa Muramoto, Hitomi Sawai, Hanae Takeda, Eiichi Mizohata, Ayumi Yamashita, Yusuke Kanematsu, Yu Takano, Eriko Nango, Rie Tanaka, Osamu Nureki, Osami Shoji, Yuka Ikemoto, Hironori Murakami, Shigeki Owada, Kensuke Tono, Makina Yabashi, Masaki Yamamoto, Hideo Ago, So Iwata, Hiroshi Sugimoto, Yoshitsugu Shiro, Minoru Kubo
Nature Communications Vol. 8 No. 1 2017年12月 研究論文(学術雑誌)
出版者・発行元:Springer Nature
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Serial femtosecond crystallography structure of cytochrome c oxidase at room temperature
Andersson Rebecka, Safari Cecilia, Dods Robert, Nango Eriko, Tanaka Rie, Yamashita Ayumi, Nakane Takanori, Tono Kensuke, Joti Yasumasa, Båth Petra, Dunevall Elin, Bosman Robert, Nureki Osamu, Iwata So, Neutze Richard, Brändén Gisela
Scientific Reports Vol. 7 No. 1 2017年12月 研究論文(学術雑誌)
出版者・発行元:Springer Nature
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Hydroxyethyl cellulose matrix applied to serial crystallography
Sugahara Michihiro, Nakane Takanori, Masuda Tetsuya, Suzuki Mamoru, Inoue Shigeyuki, Song Changyong, Tanaka Rie, Nakatsu Toru, Mizohata Eiichi, Yumoto Fumiaki, Tono Kensuke, Joti Yasumasa, Kameshima Takashi, Hatsui Takaki, Yabashi Makina, Nureki Osamu, Numata Keiji, Nango Eriko, Iwata So
Scientific Reports Vol. 7 No. 1 2017年12月 研究論文(学術雑誌)
出版者・発行元:Springer Nature
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Structural insights into the competitive inhibition of the ATP-gated P2X receptor channel
Go Kasuya, Toshiaki Yamaura, Xiao-Bo Ma, Ryoki Nakamura, Mizuki Takemoto, Hiromitsu Nagumo, Eiichi Tanaka, Naoshi Dohmae, Takanori Nakane, Ye Yu, Ryuichiro Ishitani, Osamu Matsuzaki, Motoyuki Hattori, Osamu Nureki
Nature Communications Vol. 8 No. 1 p. 876-876 2017年12月 研究論文(学術雑誌)
出版者・発行元:Springer Nature
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Coincidence timing of femtosecond optical pulses in an X-ray free electron laser
Alvaro Sanchez-Gonzalez, Allan S. Johnson, Ann Fitzpatrick, Christopher D. M. Hutchison, Clyde Fare, Violeta Cordon-Preciado, Gabriel Dorlhiac, Josie L. Ferreira, Rhodri M. Morgan, Jon P. Marangos, Shigeki Owada, Takanori Nakane, Rie Tanaka, Kensuke Tono, So Iwata, Jasper J. van Thor
Journal of Applied Physics Vol. 122 No. 20 p. 203105-203105 2017年11月28日 研究論文(学術雑誌)
出版者・発行元:{AIP} Publishing
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X-ray Free Electron Laser Determination of Crystal Structures of Dark and Light States of a Reversibly Photoswitching Fluorescent Protein at Room Temperature
Christopher Hutchison, Violeta Cordon-Preciado, Rhodri Morgan, Takanori Nakane, Josie Ferreira, Gabriel Dorlhiac, Alvaro Sanchez-Gonzalez, Allan Johnson, Ann Fitzpatrick, Clyde Fare, Jon Marangos, Chun Yoon, Mark Hunter, Daniel DePonte, Sébastien Boutet, Shigeki Owada, Rie Tanaka, Kensuke Tono, So Iwata, Jasper van Thor
International Journal of Molecular Sciences Vol. 18 No. 9 p. 1918-1918 2017年9月7日 研究論文(学術雑誌)
出版者・発行元:MDPI AG
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Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography
Yamashita Keitaro, Kuwabara Naoyuki, Nakane Takanori, Murai Tomohiro, Mizohata Eiichi, Sugahara Michihiro, Pan Dongqing, Masuda Tetsuya, Suzuki Mamoru, Sato Tomomi, Kodan Atsushi, Yamaguchi Tomohiro, Nango Eriko, Tanaka Tomoyuki, Tono Kensuke, Joti Yasumasa, Kameshima Takashi, Hatsui Takaki, Yabashi Makina, Manya Hiroshi, Endo Tamao, Kato Ryuichi, Senda Toshiya, Kato Hiroaki, Iwata So, Ago Hideo, Yamamoto Masaki, Yumoto Fumiaki, Nakatsu Toru
IUCrJ Vol. 4 No. 5 p. 639-647 2017年9月1日 研究論文(学術雑誌)
出版者・発行元:International Union of Crystallography (IUCr)
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Nanosecond pump–probe device for time-resolved serial femtosecond crystallography developed at SACLA
Minoru Kubo, Eriko Nango, Kensuke Tono, Tetsunari Kimura, Shigeki Owada, Changyong Song, Fumitaka Mafuné, Ken Miyajima, Yoshihiro Takeda, Jun-ya Kohno, Naoya Miyauchi, Takanori Nakane, Tomoyuki Tanaka, Takashi Nomura, Jan Davidsson, Rie Tanaka, Michio Murata, Takashi Kameshima, Takaki Hatsui, Yasumasa Joti, Richard Neutze, Makina Yabashi, So Iwata
Journal of Synchrotron Radiation Vol. 24 No. 5 p. 1086-1091 2017年9月1日 研究論文(学術雑誌)
出版者・発行元:International Union of Crystallography (IUCr)
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Atomic resolution structure of serine protease proteinase K at ambient temperature.
Masuda Tetsuya, Suzuki Mamoru, Inoue Shigeyuki, Song Changyong, Nakane Takanori, Nango Eriko, Tanaka Rie, Tono Kensuke, Joti Yasumasa, Kameshima Takashi, Hatsui Takaki, Yabashi Makina, Mikami Bunzo, Nureki Osamu, Numata Keiji, Iwata So, Sugahara Michihiro
Scientific reports Vol. 7 No. 1 2017年5月 研究論文(学術雑誌)
出版者・発行元:Springer Nature
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Crystal Structure of the Minimal Cas9 from Campylobacter jejuni Reveals the Molecular Diversity in the CRISPR-Cas9 Systems
Mari Yamada, Yuto Watanabe, Jonathan S. Gootenberg, Hisato Hirano, F. Ann Ran, Takanori Nakane, Ryuichiro Ishitani, Feng Zhang, Hiroshi Nishimasu, Osamu Nureki
Molecular Cell Vol. 65 No. 6 p. 1109-1121.e3 2017年3月 研究論文(学術雑誌)
出版者・発行元:Elsevier BV
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Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL
Michihiro Suga, Fusamichi Akita, Michihiro Sugahara, Minoru Kubo, Yoshiki Nakajima, Takanori Nakane, Keitaro Yamashita, Yasufumi Umena, Makoto Nakabayashi, Takahiro Yamane, Takamitsu Nakano, Mamoru Suzuki, Tetsuya Masuda, Shigeyuki Inoue, Tetsunari Kimura, Takashi Nomura, Shinichiro Yonekura, Long-Jiang Yu, Tomohiro Sakamoto, Taiki Motomura, Jing-Hua Chen, Yuki Kato, Takumi Noguchi, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Takaki Hatsui, Eriko Nango, Rie Tanaka, Hisashi Naitow, Yoshinori Matsuura, Ayumi Yamashita, Masaki Yamamoto, Osamu Nureki, Makina Yabashi, Tetsuya Ishikawa, So Iwata, Jian-Ren Shen
Nature Vol. 543 No. 7643 p. 131-135 2017年3月 研究論文(学術雑誌)
出版者・発行元:Springer Science and Business Media LLC
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Serial Femtosecond Crystallography at SACLA: Current Situation and Future Prospects
Eriko NANGO, Takanori NAKANE, So IWATA
Nihon Kessho Gakkaishi Vol. 59 No. 1 p. 12-17 2017年 研究論文(学術雑誌)
出版者・発行元:The Crystallographic Society of Japan
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Damage-free protein structure determination by X-ray free electron laser
Takanori Nakane, So Iwata, Eiichi Mizohata
Seikagaku Vol. 89 No. 4 p. 571-576 2017年 研究論文(学術雑誌)
出版者・発行元:Japanese Biochemical Society
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Crystal structures of the TRIC trimeric intracellular cation channel orthologues
Go Kasuya, Masahiro Hiraizumi, Andrés D Maturana, Kaoru Kumazaki, Yuichiro Fujiwara, Keihong Liu, Yoshiko Nakada-Nakura, So Iwata, Keisuke Tsukada, Tomotaka Komori, Sotaro Uemura, Yuhei Goto, Takanori Nakane, Mizuki Takemoto, Hideaki E Kato, Keitaro Yamashita, Miki Wada, Koichi Ito, Ryuichiro Ishitani, Motoyuki Hattori, Osamu Nureki
Cell Research Vol. 26 No. 12 p. 1288-1301 2016年12月 研究論文(学術雑誌)
出版者・発行元:Springer Science and Business Media LLC
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Structural and Functional Analysis of DDX41: a bispecific immune receptor for DNA and cyclic dinucleotide
Hiroki Omura, Daisuke Oikawa, Takanori Nakane, Megumi Kato, Ryohei Ishii, Ryuichiro Ishitani, Fuminori Tokunaga, Osamu Nureki
Scientific Reports Vol. 6 p. 34756-34756 2016年10月10日 研究論文(学術雑誌)
出版者・発行元:Springer Nature
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The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography
Petra Edlund, Heikki Takala, Elin Claesson, Leocadie Henry, Robert Dods, Heli Lehtivuori, Matthijs Panman, Kanupriya Pande, Thomas White, Takanori Nakane, Oskar Berntsson, Emil Gustavsson, Petra Bath, Vaibhav Modi, Shatabdi Roy-Chowdhury, James Zook, Peter Berntsen, Suraj Pandey, Ishwor Poudyal, Jason Tenboer, Christopher Kupitz, Anton Barty, Petra Fromme, Jake D. Koralek, Tomoyuki Tanaka, John Spence, Mengning Liang, Mark S. Hunter, Sebastien Boutet, Eriko Nango, Keith Moffat, Gerrit Groenhof, Janne Ihalainen, Emina A. Stojkovic, Marius Schmidt, Sebastian Westenhoff
SCIENTIFIC REPORTS Vol. 6 2016年10月 研究論文(学術雑誌)
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Crystal structure of the plant receptor-like kinase TDR in complex with the TDIF peptide
Junko Morita, Kazuki Kato, Takanori Nakane, Yuki Kondo, Hiroo Fukuda, Hiroshi Nishimasu, Ryuichiro Ishitani, Osamu Nureki
Nature Communications Vol. 7 p. 12383-12383 2016年8月8日 研究論文(学術雑誌)
出版者・発行元:Springer Nature
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Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA
Takashi Yamano, Hiroshi Nishimasu, Bernd Zetsche, Hisato Hirano, Ian M. Slaymaker, Yinqing Li, Iana Fedorova, Takanori Nakane, Kira S. Makarova, Eugene V. Koonin, Ryuichiro Ishitani, Feng Zhang, Osamu Nureki
Cell Vol. 165 No. 4 p. 949-962 2016年5月 研究論文(学術雑誌)
出版者・発行元:Elsevier BV
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Oil-free hyaluronic acid matrix for serial femtosecond crystallography.
Sugahara Michihiro, Song Changyong, Suzuki Mamoru, Masuda Tetsuya, Inoue Shigeyuki, Nakane Takanori, Yumoto Fumiaki, Nango Eriko, Tanaka Rie, Tono Kensuke, Joti Yasumasa, Kameshima Takashi, Hatsui Takaki, Yabashi Makina, Nureki Osamu, Numata Keiji, Iwata So
Scientific reports Vol. 6 p. 24484-24484 2016年4月 研究論文(学術雑誌)
出版者・発行元:Nature Publishing Group
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Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Yohta Fukuda, Ka Man Tse, Takanori Nakane, Toru Nakatsu, Mamoru Suzuki, Michihiro Sugahara, Shigeyuki Inoue, Tetsuya Masuda, Fumiaki Yumoto, Naohiro Matsugaki, Eriko Nango, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Changyong Song, Takaki Hatsui, Makina Yabashi, Osamu Nureki, Michael E. P. Murphy, Tsuyoshi Inoue, So Iwata, Eiichi Mizohata
Proceedings of the National Academy of Sciences Vol. 113 No. 11 p. 2928-2933 2016年3月15日 研究論文(学術雑誌)
出版者・発行元:Proceedings of the National Academy of Sciences
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Recent developments in CrystFEL
Thomas A. White, Valerio Mariani, Wolfgang Brehm, Oleks, r Yefanov, Anton Barty, Kenneth R. Beyerlein, Fedor Chervinskii, Lorenzo Galli, Cornelius Gati, Takanori Nakane, Alex, ra Tolstikova, Keitaro Yamashita, Chun Hong Yoon, Kay Diederichs, Henry N. Chapman
Journal of Applied Crystallography Vol. 49 No. 2 p. 680-689 2016年3月 研究論文(学術雑誌)
出版者・発行元:International Union of Crystallography ({IUCr})
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Haem-dependent dimerization of PGRMC1/Sigma-2 receptor facilitates cancer proliferation and chemoresistance
Kabe Yasuaki, Nakane Takanori, Koike Ikko, Yamamoto Tatsuya, Sugiura Yuki, Harada Erisa, Sugase Kenji, Shimamura Tatsuro, Ohmura Mitsuyo, Muraoka Kazumi, Yamamoto Ayumi, Uchida Takeshi, Iwata So, Yamaguchi Yuki, Krayukhina Elena, Noda Masanori, Handa Hiroshi, Ishimori Koichiro, Uchiyama Susumu, Kobayashi Takuya, Suematsu Makoto
Nature Communications Vol. 7 p. 11030-11030 2016年3月 研究論文(学術雑誌)
出版者・発行元:Nature Publishing Group
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Structure and Engineering of Francisella novicida Cas9
Hisato Hirano, Jonathan S. Gootenberg, Takuro Horii, Omar O. Abudayyeh, Mika Kimura, Patrick D. Hsu, Takanori Nakane, Ryuichiro Ishitani, Izuho Hatada, Feng Zhang, Hiroshi Nishimasu, Osamu Nureki
Cell Vol. 164 No. 5 p. 950-961 2016年2月 研究論文(学術雑誌)
出版者・発行元:Elsevier BV
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Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
Yohta Fukuda, Ka Man Tse, Mamoru Suzuki, Kay Diederichs, Kunio Hirata, Takanori Nakane, Michihiro Sugahara, Eriko Nango, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Changyong Song, Takaki Hatsui, Makina Yabashi, Osamu Nureki, Hiroyoshi Matsumura, Tsuyoshi Inoue, So Iwata, Eiichi Mizohata
Journal of Biochemistry Vol. 159 No. 5 p. 527-538 2016年1月 研究論文(学術雑誌)
出版者・発行元:Oxford University Press ({OUP})
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RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank
G. B. Quinn, C. Bi, C. H. Christie, K. Pang, A. Prli, T. Nakane, C. Zardecki, M. Voigt, H. M. Berman, P. E. Bourne, P. W. Rose
Bioinformatics Vol. 31 No. 1 p. 126-127 2015年1月1日 研究論文(学術雑誌)
出版者・発行元:Oxford University Press (OUP)
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iview: an interactive WebGL visualizer for protein-ligand complex
Hongjian Li, Kwong-Sak Leung, Takanori Nakane, Man-Hon Wong
BMC Bioinformatics Vol. 15 No. 1 p. 56-56 2014年 研究論文(学術雑誌)
出版者・発行元:Springer Nature
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JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia
Robert M. Hanson, Jaime Prilusky, Zhou Renjian, Takanori Nakane, Joel L. Sussman
Israel Journal of Chemistry Vol. 53 No. 3-4 p. 207-216 2013年4月 研究論文(学術雑誌)
出版者・発行元:Wiley-Blackwell
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Evaluation of the Pichia pastoris expression system for the production of GPCRs for structural analysis
Hidetsugu Asada, Tomoko Uemura, Takami Yurugi-Kobayashi, Mitsunori Shiroishi, Tatsuro Shimamura, Hirokazu Tsujimoto, Keisuke Ito, Taishi Sugawara, Takanori Nakane, Norimichi Nomura, Takeshi Murata, Tatsuya Haga, So Iwata, Takuya Kobayashi
Microbial Cell Factories Vol. 10 No. 1 p. 24-24 2011年 研究論文(学術雑誌)
出版者・発行元:Springer Nature