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An Attention‐Based Deep Neural Network Model to Detect Cis‐Regulatory Elements at the Single‐Cell Level From Multi‐Omics Data
Ken Murakami, Keita Iida, Mariko Okada
Genes to Cells Vol. 30 No. 2 2025年2月4日 研究論文（学術雑誌）
出版者・発行元：
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Identifying Key Regulatory Genes in Drug Resistance Acquisition: Modeling Pseudotime Trajectories of Breast Cancer Single-Cell Transcriptome
Keita Iida, Mariko Okada
Cancers Vol. 16 No. 10 p. 1-21 2024年5月15日 研究論文（学術雑誌）
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Positive and negative feedback regulation of the TGF-β1 explains two equilibrium states in skin aging
Masatoshi Haga, Keita Iida, Mariko Okada
iScience Vol. 27 No. 5 p. 109708-109708 2024年5月 研究論文（学術雑誌）
出版者・発行元：Elsevier BV
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Clonal origin and lineage ambiguity in mixed neuroendocrine carcinoma of the uterine cervix
Masamune Masuda, Keita Iida, Sadahiro Iwabuchi, Mie Tanaka, Satoshi Kubota, Hiroyuki Uematsu, Kunishige Onuma, Yoji Kukita, Kikuya Kato, Shoji Kamiura, Aya Nakajima, Roberto Coppo, Mizuki Kanda, Kiyoshi Yoshino, Yutaka Ueda, Eiichi Morii, Tadashi Kimura, Jumpei Kondo, Mariko Okada-Hatakeyama, Shinichi Hashimoto, Masahiro Inoue
The American Journal of Pathology 2023年12月14日 研究論文（学術雑誌）
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Distinct but interchangeable subpopulations of colorectal cancer cells with different growth fates and drug sensitivity
Roberto Coppo, Jumpei Kondo, Keita Iida, Mariko Okada, Kunishige Onuma, Yoshihisa Tanaka, Mayumi Kamada, Masayuki Ohue, Kenji Kawada, Kazutaka Obama, Masahiro Inoue
iScience Vol. 26 No. 2 p. 1-25 2023年1月13日 研究論文（学術雑誌）
出版者・発行元：Cold Spring Harbor Laboratory
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TGF-β generates a population of cancer cells residing in G1 phase with high motility and metastatic potential via KRTAP2-3
Kazuki Takahashi, Katarzyna A. Podyma-Inoue, Maki Saito, Shintaro Sakakitani, Akinari Sugauchi, Keita Iida, Sadahiro Iwabuchi, Daizo Koinuma, Kyoko Kurioka, Toru Konishi, Susumu Tanaka, Atsushi Kaida, Masahiko Miura, Shinichi Hashimoto, Mariko Okada, Toshihiro Uchihashi, Kohei Miyazono, Tetsuro Watabe
Cell Reports Vol. 40 No. 13 p. 1-16 2022年9月27日 研究論文（学術雑誌）
出版者・発行元：
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ASURAT: functional annotation-driven unsupervised clustering of single-cell transcriptomes
Keita Iida, Jumpei Kondo, Johannes Nicolaus Wibisana, Masahiro Inoue, Mariko Okada
Bioinformatics Vol. 38 No. 18 p. 4330-4336 2022年8月4日 研究論文（学術雑誌）
出版者・発行元：Cold Spring Harbor Laboratory
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ASURAT: Functional annotation-driven unsupervised clustering for single-cell data
Keita Iida
Bioconductor 2022年4月5日
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dbTMM: an integrated database of large-scale cohort, genome and clinical data for the Tohoku Medical Megabank Project
Soichi Ogishima, Satoshi Nagaie, Satoshi Mizuno, Ryosuke Ishiwata, Keita Iida, Kazuro Shimokawa, Takako Takai-Igarashi, Naoki Nakamura, Sachiko Nagase, Tomohiro Nakamura, Naho Tsuchiya, Naoki Nakaya, Keiko Murakami, Fumihiko Ueno, Tomomi Onuma, Mami Ishikuro, Taku Obara, Shunji Mugikura, Hiroaki Tomita, Akira Uruno, Tomoko Kobayashi, Akito Tsuboi, Shu Tadaka, Fumiki Katsuoka, Akira Narita, Mika Sakurai, Satoshi Makino, Gen Tamiya, Yuichi Aoki, Ritsuko Shimizu, Ikuko N. Motoike, Seizo Koshiba, Naoko Minegishi, Kazuki Kumada, Takahiro Nobukuni, Kichiya Suzuki, Inaho Danjoh, Fuji Nagami, Kozo Tanno, Hideki Ohmomo, Koichi Asahi, Atsushi Shimizu, Atsushi Hozawa, Shinichi Kuriyama, Masayuki Yamamoto, Michiaki Abe, Yayoi Aizawa, Yuichi Aoki, Koichi Chida, Inaho Danjoh, Shinichi Egawa, Ai Eto, Takamitsu Funayama, Nobuo Fuse, Yohei Hamanaka, Yuki Harada, Hiroaki Hashizume, Shinichi Higuchi, Sachiko Hirano, Takumi Hirata, Masahiro Hiratsuka, Atsushi Hozawa, Kazuhiko Igarashi, Jin Inoue, Noriko Ishida, Naoto Ishii, Tadashi Ishii, Mami Ishikuro, Kiyoshi Ito, Sadayoshi Ito, Maiko Kageyama, Fumiki Katsuoka, Hiroshi Kawame, Junko Kawashima, Masahiro Kikuya, Kengo Kinoshita, Kazuyuki Kitatani, Tomomi Kiyama, Hideyasu Kiyomoto, Tomoko Kobayashi, Eiichi Kodama, Mana Kogure, Kaname Kojima, Sachie Koreeda, Seizo Koshiba, Shihoko Koyama, Hisaaki Kudo, Kazuki Kumada, Shigeo Kure, Miho Kuriki, Shinichi Kuriyama, Yoko Kuroki, Norihide Maikusa, Satoshi Makino, Hiroko Matsubara, Hiroyuki Matsui, Hirohito Metoki, Takahiro Mimori, Naoko Minegishi, Kazuharu Misawa, Masako Miyashita, Satoshi Mizuno, Hozumi Motohashi, Ikuko N. Motoike, Satoshi Nagaie, Masato Nagai, Fuji Nagami, Masao Nagasaki, Sachiko Nagase, Naoki Nakamura, Tomohiro Nakamura, Naoki Nakaya, Keiko Nakayama, Akira Narita, Ichiko Nishijima, Takahiro Nobukuni, Kotaro Nochioka, Taku Obara, Soichi Ogishima, Noriaki Ohuchi, Gervais Olivier, Noriko Osumi, Hiroshi Otsu, Akihito Otsuki, Daisuke Saigusa, Sakae Saito, Tomo Saito, Masaki Sakaida, Mika Sakurai-Yageta, Yuki Sato, Yukuto Sato, Atsushi Sekiguchi, Chen-Yang Shen, Tomoko F. Shibata, Ritsuko Shimizu, Kazuro Shimokawa, Matsuyuki Shirota, Junichi Sugawara, Kichiya Suzuki, Yoichi Suzuki, Shu Tadaka, Makiko Taira, Takako Takai-Igarashi, Yuji Takano, Yasuyuki Taki, Gen Tamiya, Osamu Tanabe, Hiroshi Tanaka, Yukari Tanaka, Shunsuke Teraguchi, Takahiro Terakawa, Teiji Tominaga, Hiroaki Tomita, Akito Tsuboi, Naho Tsuchiya, Ichiro Tsuji, Masao Ueki, Akira Uruno, Nobuo Yaegashi, Junya Yamagishi, Yumi Yamaguchi-Kabata, Chizuru Yamanaka, Riu Yamashita, Jun Yasuda, Junji Yokozawa, Kazunori Waki, Makoto Sasaki, Junko Akai, Ryujin Endo, Akimune Fukushima, Ryohei Furukawa, Tsuyoshi Hachiya, Kouhei Hashizume, Jiro Hitomi, Yasushi Ishigaki, Shohei Komaki, Yuka Kotozaki, Takahiro Mikami, Motoyuki Nakamura, Naoyuki Nishiya, Satoshi Nishizuka, Yoko Nomura, Kuniaki Ogasawara, Hideki Ohmomo, Shinichi Omama, Ryo Otomo, Kotaro Otsuka, Kotaro Oyama, Kiyomi Sakata, Ryohei Sasaki, Mamoru Satoh, Namie Sato, Atsushi Shimizu, Yu Shiwa, Yoichi Sutoh, Nobuyuki Takanashi, Noriko Takebe, Fumitaka Tanaka, Ryoichi Tanaka, Kozo Tanno, Tomoharu Tokutomi, Kayono Yamamoto, Fumio Yamashita, Nobuo Fuse, Teiji Tominaga, Shigeo Kure, Nobuo Yaegashi, Kengo Kinoshita, Makoto Sasaki, Hiroshi Tanaka, Masayuki Yamamoto
Human Genome Variation Vol. 8 No. 1 p. 44-44 2021年12月 研究論文（学術雑誌）
出版者・発行元：Springer Science and Business Media LLC
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Building patient‐specific models for receptor tyrosine kinase signaling networks
Kyoichi Ebata, Sawa Yamashiro, Keita Iida, Mariko Okada
The FEBS Journal 2021年5月14日 研究論文（学術雑誌）
出版者・発行元：Wiley
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Novel candidates of pathogenic variants of the BRCA1 and BRCA2 genes from a dataset of 3,552 Japanese whole genomes (3.5KJPNv2)
Hideki Tokunaga, Keita Iida, Atsushi Hozawa, Soichi Ogishima, Yoh Watanabe, Shogo Shigeta, Muneaki Shimada, Yumi Yamaguchi-Kabata, Shu Tadaka, Fumiki Katsuoka, Shin Ito, Kazuki Kumada, Yohei Hamanaka, Nobuo Fuse, Kengo Kinoshita, Masayuki Yamamoto, Nobuo Yaegashi, Jun Yasuda
PLOS ONE Vol. 16 No. 1 p. e0236907-e0236907 2021年1月11日 研究論文（学術雑誌）
出版者・発行元：Public Library of Science (PLoS)
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Quantifying heterogeneity of stochastic gene expression
Keita Iida, Nobuaki Obata, Yoshitaka Kimura
Journal of Theoretical Biology, Elsevier Vol. 465 p. 56-62 2019年3月 研究論文（学術雑誌）
出版者・発行元：Elsevier BV
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Self-organized Motion: Physicochemical Design based on Nonlinear Dynamics
Hiroyuki Kitahata, Yuki Koyano, Keita Iida, Masaharu Nagayama
Theoretical and Computational Chemistry Series 2018年11月1日
出版者・発行元：Royal Society of Chemistry
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Mathematical Theory to Compute Stochastic Cellular Processes
Keita Iida, Yoshitaka Kimura
APPLICATIONS + PRACTICAL CONCEPTUALIZATION + MATHEMATICS = FRUITFUL INNOVATION, Springer Vol. 11 p. 117-120 2016年 研究論文（国際会議プロシーディングス）
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Vaginal LPS changed gene transcriptional regulation response to ischemic reperfusion and increased vulnerability of fetal brain hemorrhage
Yupeng Dong, Yoshitaka Kimura, Takuya Ito, Clarissa Velayo, Takafumi Sato, Rika Sugibayashi, Kiyoe Funamoto, Kudo Hitomi, Keita Iida, Miyuki Endo, Naoaki Sato, Nobuo Yaegashi
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS Vol. 468 No. 1-2 p. 228-233 2015年12月 研究論文（学術雑誌）
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Intrauterine Ischemic Reperfusion Switches the Fetal Transcriptional Pattern from HIF-1α- to P53-Dependent Regulation in the Murine Brain
Yupeng Dong, Takuya Ito, Clarissa Velayo, Takafumi Sato, Keita Iida, Miyuki Endo, Kiyoe Funamoto, Naoaki Sato, Nobuo Yaegashi, Yoshitaka Kimura
PLoS ONE Vol. 9 No. 10 p. e110577-e110577 2014年10月17日 研究論文（学術雑誌）
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Theoretical study on the translation and rotation of an elliptic camphor particle
Keita Iida, Hiroyuki Kitahata, Masaharu Nagayama
PHYSICA D-NONLINEAR PHENOMENA Vol. 272 p. 39-50 2014年4月 研究論文（学術雑誌）
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Molecular Patterns of Neurodevelopmental Preconditioning: A Study of the Effects of Antenatal Steroid Therapy in a Protein-Restriction Mouse Model
Clarissa Velayo, Takuya Ito, Yupeng Dong, Miyuki Endo, Rika Sugibayashi, Kiyoe Funamoto, Keita Iida, Nobuo Yaegashi, Yoshitaka Kimura
ISRN Obstetrics and Gynecology Vol. 2014 p. 1-13 2014年3月13日 研究論文（学術雑誌）
出版者・発行元：Hindawi Limited
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Spontaneous motion of an elliptic camphor particle
Hiroyuki Kitahata, Keita Iida, Masaharu Nagayama
PHYSICAL REVIEW E Vol. 87 No. 1 2013年1月 研究論文（学術雑誌）
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Experimental and theoretical studies on the self-motion of a phenanthroline disk coupled with complex formation
Keita Iida, Nobuhiko J. Suematsu, Yumi Miyahara, Hiroyuki Kitahata, Masaharu Nagayama, Satoshi Nakata
PHYSICAL CHEMISTRY CHEMICAL PHYSICS Vol. 12 No. 7 p. 1557-1563 2010年 研究論文（学術雑誌）
