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Affinity shift of ATP upon glycerol binding to a glycerol kinase from the hyperthermophilic archaeon Thermococcus kodakarensis KOD1
Hokao Ryuta, Matsumura Hiroyoshi, Katsumi Ryota, Angkawidjaja Clement, Takano Kazufumi, Kanaya Shigenori, Koga Yuichi
Journal of bioscience and bioengineering Vol. 129 No. 6 p. 657-663 2020年6月
出版者・発行元:Society for Biotechnology
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Crystal structure of the Fab region of a neutralizing antibody against granulocyte-macrophage colony-stimulating factor.
Clement Angkawidjaja, Takashi Torashima
Acta crystallographica. Section F, Structural biology communications Vol. 75 No. Pt 10 p. 634-639 2019年10月1日 研究論文(学術雑誌)
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Structural Basis for the Serratia marcescens Lipase Secretion System: Crystal Structures of the Membrane Fusion Protein and Nucleotide-Binding Domain.
Daichi Murata, Hiroyuki Okano, Clement Angkawidjaja, Masato Akutsu, Shun-Ichi Tanaka, Kenyu Kitahara, Takuya Yoshizawa, Hiroyoshi Matsumura, Yuji Kado, Eiichi Mizohata, Tsuyoshi Inoue, Satoshi Sano, Yuichi Koga, Shigenori Kanaya, Kazufumi Takano
Biochemistry Vol. 56 No. 47 p. 6281-6291 2017年11月28日 研究論文(学術雑誌)
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Hydrophobic interactions induced activation of a thermo-alkalophilic lipase from Geobacillus SBS-4S by molecular dynamics simulations
Muhammad Tayyab, Naeem Rashid, Clement Angkawidjaja, Shigenori Kanaya, Muhammad Wasim, Ali Raza Awan, Sehrish Firyal, Tahir Yaqub, Masood Ahmed Siddiqui
Journal of the Chemical Society of Pakistan Vol. 37 No. 5 p. 1030-1032 2015年10月1日 研究論文(学術雑誌)
出版者・発行元:Chemical Society of Pakistan
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Structure, activity, and stability of metagenome-derived glycoside hydrolase family 9 endoglucanase with an N-terminal Ig-like domain.
Hiroyuki Okano, Eiko Kanaya, Masashi Ozaki, Clement Angkawidjaja, Shigenori Kanaya
Protein science : a publication of the Protein Society Vol. 24 No. 3 p. 408-19 2015年3月 研究論文(学術雑誌)
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Structural and biochemical characterization of a metagenome-derived esterase with a long N-terminal extension.
Hiroyuki Okano, Xun Hong, Eiko Kanaya, Clement Angkawidjaja, Shigenori Kanaya
Protein science : a publication of the Protein Society Vol. 24 No. 1 p. 93-104 2015年1月 研究論文(学術雑誌)
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Rational design of a glycosynthase by the crystal structure of β-galactosidase from Bacillus circulans (BgaC) and its use for the synthesis of N-acetyllactosamine type 1 glycan structures.
Manja Henze, Dong-Ju You, Claudia Kamerke, Natalie Hoffmann, Clement Angkawidjaja, Sabrina Ernst, Jörg Pietruszka, Shigenori Kanaya, Lothar Elling
Journal of biotechnology Vol. 191 p. 78-85 2014年12月10日 研究論文(学術雑誌)
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Structural basis for salt-dependent folding of ribonuclease H1 from halophilic archaeon Halobacterium sp. NRC-1.
Dong-Ju You, Nujarin Jongruja, Elias Tannous, Clement Angkawidjaja, Yuichi Koga, Shigenori Kanaya
Journal of structural biology Vol. 187 No. 2 p. 119-128 2014年8月 研究論文(学術雑誌)
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Calcium-independent opening of lid1 of a family I.3 lipase by a single Asp to Arg mutation at the calcium-binding site.
M Cheng, C Angkawidjaja, Y Koga, S Kanaya
Protein engineering, design & selection : PEDS Vol. 27 No. 5 p. 169-76 2014年5月 研究論文(学術雑誌)
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Structural and mechanistic insights into the kynurenine aminotransferase-mediated excretion of kynurenic acid.
Ken Okada, Clement Angkawidjaja, Yuichi Koga, Shigenori Kanaya
Journal of structural biology Vol. 185 No. 3 p. 257-66 2014年3月 研究論文(学術雑誌)
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Structure and stability of metagenome-derived glycoside hydrolase family 12 cellulase (LC-CelA) a homolog of Cel12A from Rhodothermus marinus.
Hiroyuki Okano, Masashi Ozaki, Eiko Kanaya, Joong-Jae Kim, Clement Angkawidjaja, Yuichi Koga, Shigenori Kanaya
FEBS open bio Vol. 4 p. 936-46 2014年 研究論文(学術雑誌)
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Formation of the high-affinity calcium binding site in pro-subtilisin E with the insertion sequence IS1 of pro-Tk-subtilisin.
Ryo Uehara, Clement Angkawidjaja, Yuichi Koga, Shigenori Kanaya
Biochemistry Vol. 52 No. 50 p. 9080-8 2013年12月17日 研究論文(学術雑誌)
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Role of N-terminal extension of Bacillus stearothermophilus RNase H2 and C-terminal extension of Thermotoga maritima RNase H2.
Etin-Diah Permanasari, Clement Angkawidjaja, Yuichi Koga, Shigenori Kanaya
The FEBS journal Vol. 280 No. 20 p. 5065-79 2013年10月 研究論文(学術雑誌)
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Crystallization and X-ray structure determination of a thermoalkalophilic lipase from Geobacillus SBS-4S.
Muhammad Tayyab, Naeem Rashid, Clement Angkawidjaja, Shigenori Kanaya, Muhammad Akhtar
Acta crystallographica. Section F, Structural biology and crystallization communications Vol. 69 No. Pt 4 p. 355-7 2013年4月1日 研究論文(学術雑誌)
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Accelerated maturation of Tk-subtilisin by a Leu→Pro mutation at the C-terminus of the propeptide, which reduces the binding of the propeptide to Tk-subtilisin.
Cheng M, Angkawidjaja C, Koga Y, Kanaya S
FEBS J., Vol. 280 No. 4 p. 994-1006 2013年2月 研究論文(学術雑誌)
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Requirement of lid2 for interfacial activation of a family I.3 lipase with unique two lid structures.
Maria Cheng, Clement Angkawidjaja, Yuichi Koga, Shigenori Kanaya
The FEBS journal Vol. 279 No. 19 p. 3727-3737 2012年10月 研究論文(学術雑誌)
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Structure and stability of a thermostable carboxylesterase from the thermoacidophilic archaeon Sulfolobus tokodaii.
Clement Angkawidjaja, Yuichi Koga, Kazufumi Takano, Shigenori Kanaya
The FEBS journal Vol. 279 No. 17 p. 3071-84 2012年9月 研究論文(学術雑誌)
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Structure and characterization of RNase H3 from Aquifex aeolicus.
Nujarin Jongruja, Dong-Ju You, Clement Angkawidjaja, Eiko Kanaya, Yuichi Koga, Shigenori Kanaya
The FEBS journal Vol. 279 No. 15 p. 2737-53 2012年8月 研究論文(学術雑誌)
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Activity, stability, and structure of metagenome-derived LC11-RNase H1, a homolog of Sulfolobus tokodaii RNase H1.
Tri-Nhan Nguyen, Clement Angkawidjaja, Eiko Kanaya, Yuichi Koga, Kazufumi Takano, Shigenori Kanaya
Protein science : a publication of the Protein Society Vol. 21 No. 4 p. 553-61 2012年4月 研究論文(学術雑誌)
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Role of polar and nonpolar residues at the active site for PPIase activity of FKBP22 from Shewanella sp. SIB1.
Cahyo Budiman, Takashi Tadokoro, Clement Angkawidjaja, Yuichi Koga, Shigenori Kanaya
The FEBS journal Vol. 279 No. 6 p. 976-86 2012年3月 研究論文(学術雑誌)
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Ca2+ regulates the Drosophila Stoned-A and Stoned-B proteins interaction with the C2B domain of Synaptotagmin-1.
Carolina Soekmadji, Clement Angkawidjaja, Leonard E Kelly
PloS one Vol. 7 No. 6 2012年 研究論文(学術雑誌)
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Characteristic features of kynurenine aminotransferase allosterically regulated by (alpha)-ketoglutarate in cooperation with kynurenine.
Ken Okada, Clement Angkawidjaja, Yuichi Koga, Kazufumi Takano, Shigenori Kanaya
PloS one Vol. 7 No. 7 2012年 研究論文(学術雑誌)
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Crystal structure of N-domain of FKBP22 from Shewanella sp. SIB1: dimer dissociation by disruption of Val-Leu knot.
Cahyo Budiman, Clement Angkawidjaja, Hideki Motoike, Yuichi Koga, Kazufumi Takano, Shigenori Kanaya
Protein science : a publication of the Protein Society Vol. 20 No. 10 p. 1755-64 2011年10月 研究論文(学術雑誌)
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Identification of the substrate binding site in the N-terminal TBP-like domain of RNase H3.
Seiko Miyashita, Takashi Tadokoro, Clement Angkawidjaja, Dong-Ju You, Yuichi Koga, Kazufumi Takano, Shigenori Kanaya
FEBS letters Vol. 585 No. 14 p. 2313-7 2011年7月21日 研究論文(学術雑誌)
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Importance of an extreme C-terminal motif of a family I.3 lipase for stability.
K Kuwahara, C Angkawidjaja, Y Koga, K Takano, S Kanaya
Protein engineering, design & selection : PEDS Vol. 24 No. 5 p. 411-8 2011年5月 研究論文(学術雑誌)
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Highly active metallocarboxypeptidase from newly isolated Geobacillus strain SBS-4S : Cloning and characterization
Tayyab Muhammad, Rashid Naeem, Angkawidjaja Clement, KANAYA Shigenori, AKHTAR Muhammad
Journal of bioscience and bioengineering Vol. 111 No. 3 p. 259-265 2011年3月25日
出版者・発行元:公益社団法人日本生物工学会
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Stabilization by fusion to the C-terminus of hyperthermophile Sulfolobus tokodaii RNase HI: a possibility of protein stabilization tag.
Kazufumi Takano, Tomohiro Okamoto, Jun Okada, Shun-ichi Tanaka, Clement Angkawidjaja, Yuichi Koga, Shigenori Kanaya
PloS one Vol. 6 No. 1 2011年1月19日 研究論文(学術雑誌)
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Crystal structure of stable protein CutA1 from psychrotrophic bacterium Shewanella sp. SIB1.
Aya Sato, Sonoko Yokotani, Takashi Tadokoro, Shun-ichi Tanaka, Clement Angkawidjaja, Yuichi Koga, Kazufumi Takano, Shigenori Kanaya
Journal of synchrotron radiation Vol. 18 No. 1 p. 6-10 2011年1月 研究論文(学術雑誌)
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Protein core adaptability: crystal structures of the cavity-filling variants of Escherichia coli RNase HI.
Masaki Tanaka, Hyongi Chon, Clement Angkawidjaja, Yuichi Koga, Kazufumi Takano, Shigenori Kanaya
Protein and peptide letters Vol. 17 No. 9 p. 1163-9 2010年9月 研究論文(学術雑誌)
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Crystal structure of a subtilisin homologue, Tk-SP, from thermococcus kodakaraensis: Requirement of a C-terminal β-Jelly Roll domain for hyperstability
Foophow T, Tanaka S.-I, Angkawidjaja C, Koga Y, Takano K, Kanaya S
Journal of Molecular Biology Vol. 400 No. 4 p. 865-77 2010年7月23日 研究論文(学術雑誌)
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X-ray crystallographic and MD simulation studies on the mechanism of interfacial activation of a family I.3 lipase with two lids.
Clement Angkawidjaja, Hiroyoshi Matsumura, Yuichi Koga, Kazufumi Takano, Shigenori Kanaya
Journal of molecular biology Vol. 400 No. 1 p. 82-95 2010年7月2日 研究論文(学術雑誌)
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Engineering of monomeric FK506-binding protein 22 with peptidyl prolyl cis-trans isomerase. Importance of a V-shaped dimeric structure for binding to protein substrate.
Cahyo Budiman, Keisuke Bando, Clement Angkawidjaja, Yuichi Koga, Kazufumi Takano, Shigenori Kanaya
The FEBS journal Vol. 276 No. 15 p. 4091-101 2009年8月 研究論文(学術雑誌)
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Destabilization of psychrotrophic RNase HI in a localized fashion as revealed by mutational and X-ray crystallographic analyses.
Muhammad S Rohman, Takashi Tadokoro, Clement Angkawidjaja, Yumi Abe, Hiroyoshi Matsumura, Yuichi Koga, Kazufumi Takano, Shigenori Kanaya
The FEBS journal Vol. 276 No. 2 p. 603-13 2009年1月 研究論文(学術雑誌)
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Importance of the Ca2+-binding sites in the N-catalytic domain of a family I.3 lipase for activity and stability.
K Kuwahara, C Angkawidjaja, H Matsumura, Y Koga, K Takano, S Kanaya
Protein engineering, design & selection : PEDS Vol. 21 No. 12 p. 737-44 2008年12月 研究論文(学術雑誌)
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Crystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation.
Clement Angkawidjaja, Dong-ju You, Hiroyoshi Matsumura, Katsumasa Kuwahara, Yuichi Koga, Kazufumi Takano, Shigenori Kanaya
FEBS letters Vol. 581 No. 26 p. 5060-4 2007年10月30日 研究論文(学術雑誌)
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Extracellular overproduction and preliminary crystallographic analysis of a family I.3 lipase.
Clement Angkawidjaja, Dong-Ju You, Hiroyoshi Matsumura, Yuichi Koga, Kazufumi Takano, Shigenori Kanaya
Acta crystallographica. Section F, Structural biology and crystallization communications Vol. 63 No. Pt 3 p. 187-9 2007年3月1日 研究論文(学術雑誌)
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Family I.3 lipase: bacterial lipases secreted by the type I secretion system.
C Angkawidjaja, S Kanaya
Cellular and molecular life sciences : CMLS Vol. 63 No. 23 p. 2804-17 2006年12月 研究論文(学術雑誌)
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Extracellular secretion of Escherichia coli alkaline phosphatase with a C-terminal tag by type I secretion system: purification and biochemical characterization.
C Angkawidjaja, K Kuwahara, K Omori, Y Koga, K Takano, S Kanaya
Protein engineering, design & selection : PEDS Vol. 19 No. 7 p. 337-43 2006年7月 研究論文(学術雑誌)
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Importance of a repetitive nine-residue sequence motif for intracellular stability and functional structure of a family I.3 lipase.
Clement Angkawidjaja, Aditya Paul, Yuichi Koga, Kazufumi Takano, Shigenori Kanaya
FEBS letters Vol. 579 No. 21 p. 4707-12 2005年8月29日 研究論文(学術雑誌)