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Yuki Kato
加藤 有己
Yuki Kato
加藤 有己
Graduate School of Medicine　Division of Medicine, Associate Professor

keyword RNA sequence analysis，Single-cell genomics，Bioinformatics

Research History 13

  1. 2022/04 - Present
    Osaka University　Graduate School of Medicine Division of Medicine　Associate Professor

  2. 2020/10 - 2022/03
    Osaka University　Faculty of Medicine　Lecturer

  3. 2016/04 - 2022/03
    Osaka University　Graduate School of Medicine Division of Medicine　Assistant Professor

  4. 2014/05 - 2016/03
    Kyoto University

  5. 2010/10 - 2014/04
    Nara Institute of Science and Technology　Graduate School of Information Science

  6. 2012/09 - 2013/03
    コペンハーゲン大学　健康医科学部　客員研究員

  7. 2007/04 - 2008/03
    日本学術振興会　特別研究員PD（京都大学）

  8. 2022/04 - Present
    Osaka University　Integrated Frontier Research for Medical Science Division, Institute for Open and Transdisciplinary Research Initiatives　Associate Professor

  9. 2020/09 - 2022/03
    Osaka University

  10. 2014/07 - 2017/08
    Nara Institute of Science and Technology　Graduate School of Biological Sciences

  11. 2008/04 - 2010/10
    Kyoto University　Institute for Chemical Research

  12. 2005/04 - 2007/03
    日本学術振興会　特別研究員DC1（奈良先端科学技術大学院大学）

  13. 2002/04 - 2003/03
    Doshisha University

Education 3

  1. Nara Institute of Science and Technology　Graduate School of Information Science　Department of Information Processing

    2005/04 - 2007/03

  2. Nara Institute of Science and Technology　Graduate School of Information Science　Department of Information Processing

    2003/04 - 2005/03

  3. Doshisha University

    1998/04 - 2002/03

Committee Memberships 12

  1. 情報処理学会　学会論文誌運営委員会 The Editorial Committee of IPSJ Transactions on Bioinformatics (TBIO)　Academic society

    2023/04 - Present

  2. 情報処理学会　調査研究運営委員会 バイオ情報学研究運営委員会 幹事　Academic society

    2023/04 - Present

  3. 情報処理学会　調査研究運営委員会 バイオ情報学研究運営委員会 運営委員　Academic society

    2020/04 - 2023/03

  4. 情報処理学会　The Editorial Committee of IPSJ Transactions on Bioinformatics (TBIO) 副委員長　Academic society

    2019/04 - 2023/03

  5. 情報処理学会　調査研究運営委員会 バイオ情報学研究運営委員　Academic society

    2015/04 - 2019/03

  6. 情報処理学会　学会論文誌運営委員会 The Editorial Committee of IPSJ Transactions on Bioinformatics (TBIO)　Academic society

    2015/04 - 2019/03

  7. 情報処理学会　論文誌ジャーナル/JIP編集委員会 小委員会（基盤グループ [Computing Group]）編集委員

    2016/06 - 2018/05

  8. The 25th Annual International Conference on Intelligent Systems for Molecular Biology and the 16th European Conference on Computational Biology (ISMB/ECCB2017)　Program Committee

    2017 - 2017

  9. The 9th IAPR conference on Pattern Recognition in Bioinformatics (PRIB2014)　Program Committee

    2014 - 2014

  10. The Tenth International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics (CIBB2013) and the Eighth IAPR International Conference on Pattern Recognition in Bioinformatics (PRIB2013)　Program Committee

    2013 - 2013

  11. First International Conference on Bioinformatics (BIOINFORMATICS2010)　Program Committee

    2010 - 2010

  12. 2009 IEEE Congress on Evolutionary Computation (CEC2009)　Program Committee

    2009 - 2009

Professional Memberships 2

  1. International Society for Computational Biology (ISCB)

  2. 情報処理学会

Research Areas 3

  1. Life sciences / Systems genomics /

  2. Informatics / Biological, health, and medical informatics /

  3. Informatics / Information theory /

Awards 5

  1. 2011年度情報処理学会山下記念研究賞

    加藤 有己　2012/03

  2. 2009 Oxford Journals - Japanese Society for Bioinformatics Prize (GIW2009 Best Poster Award)

    2009/12

  3. 2006年度バイオ情報学研究会論文賞

    2008/12

  4. 平成19年度情報処理学会論文賞

    2008/05

  5. 2006年度IPSJ Digital Courier船井若手奨励賞

    2007/03

Papers 34

  1. A cancer-associated METTL14 mutation induces aberrant m6A modification, affecting tumor growth

    Kotaro Miyake, Pedro Henrique Costa Cruz, Izumi Nagatomo, Yuki Kato, Daisuke Motooka, Shingo Satoh, Yuichi Adachi, Yoshito Takeda, Yukio Kawahara, Atsushi Kumanogoh

    Cell Reports　Vol. 42　No. 7　p. 112688-112688　2023/07　Research paper (scientific journal)

    Publisher: Elsevier BV

  2. Alignment of single-cell trajectory trees with CAPITAL

    Reiichi Sugihara, Yuki Kato, Tomoya Mori, Yukio Kawahara

    Nature Communications　Vol. 13　No. 1　2022/10/14　Research paper (scientific journal)

    Publisher: Springer Science and Business Media LLC

  3. Prediction of RNA secondary structure including pseudoknots for long sequences

    Kengo Sato, Yuki Kato

    Briefings in Bioinformatics　Vol. 23　No. 1　2021/10/02　Research paper (scientific journal)

    Publisher: Oxford University Press (OUP)

  4. Mutations in the adenosine deaminase ADAR1 that prevent endogenous Z-RNA binding induce Aicardi-Goutières-syndrome-like encephalopathy

    Taisuke Nakahama, Yuki Kato, Toshiharu Shibuya, Maal Inoue, Jung In Kim, Tuangtong Vongpipatana, Hiroyuki Todo, Yanfang Xing, Yukio Kawahara

    Immunity　Vol. 54　No. 9　p. 1976-1988.e7　2021/09　Research paper (scientific journal)

    Publisher: Elsevier BV

  5. Age-dependent decline in remyelination capacity is mediated by apelin–APJ signaling

    Masumi Ito, Rieko Muramatsu, Yuki Kato, Bikram Sharma, Akiko Uyeda, Shogo Tanabe, Harutoshi Fujimura, Hiroyasu Kidoya, Nobuyuki Takakura, Yukio Kawahara, Masaki Takao, Hideki Mochizuki, Akiyoshi Fukamizu, Toshihide Yamashita

    Nature Aging　Vol. 1　No. 3　p. 284-294　2021/03　Research paper (scientific journal)

    Publisher: Springer Science and Business Media LLC

  6. Bivartect: accurate and memory-saving breakpoint detection by direct read comparison

    Keisuke Shimmura, Yuki Kato, Yukio Kawahara

    Bioinformatics　Vol. 36　No. 9　p. 2725-2730　2020/05/01　Research paper (scientific journal)

    Publisher: Oxford University Press (OUP)

  7. ADAR1-mediated RNA editing is required for thymic self-tolerance and prevention of autoimmunity

    Taisuke Nakahama, Yuki Kato, Jung In Kim, Tuangtong Vongpipatana, Yutaka Suzuki, Carl Walkley, Yukio Kawahara

    EMBO Reports　Vol. 19　2018/10　Research paper (scientific journal)

  8. Alignment-free comparative genomic screen for structured RNAs using coarse-grained secondary structure dot plots

    Yuki Kato, Jan Gorodkin, Jakob Hull Havgaard

    BMC Genomics　Vol. 18　No. 1　2017/12　Research paper (scientific journal)

  9. An accessibility-incorporated method for accurate prediction of RNA–RNA interactions from sequence data

    Yuki Kato, Tomoya Mori, Kengo Sato, Shingo Maegawa, Hiroshi Hosokawa, Tatsuya Akutsu

    Bioinformatics　Vol. 33　No. 2　p. 202-209　2017/01/15　Research paper (scientific journal)

  10. Using hidden Markov models to investigate G-quadruplex motifs in genomic sequences

    Masato Yano, Yuki Kato

    BMC Genomics　Vol. 15　No. Suppl 9　2014/12　Research paper (scientific journal)

  11. Rtips: fast and accurate tools for RNA 2D structure prediction using integer programming

    Y. Kato, K. Sato, K. Asai, T. Akutsu

    Nucleic Acids Research　Vol. 40　No. W1　p. W29-W34　2012/07/01　Research paper (scientific journal)

  12. IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming

    Kengo Sato, Yuki Kato, Michiaki Hamada, Tatsuya Akutsu, Kiyoshi Asai

    Bioinformatics　Vol. 27　No. 13　p. i85-i93　2011/07/01　Research paper (scientific journal)

  13. RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming

    Yuki Kato, Kengo Sato, Michiaki Hamada, Yoshihide Watanabe, Kiyoshi Asai, Tatsuya Akutsu

    Bioinformatics　Vol. 26　No. 18　p. i460-i466　2010/09/15　Research paper (scientific journal)

  14. Branch-and-Bound Algorithms for Enumerating Treelike Chemical Graphs with Given Path Frequency Using Detachment-Cut

    Yusuke Ishida, Yuki Kato, Liang Zhao, Hiroshi Nagamochi, Tatsuya Akutsu

    Journal of Chemical Information and Modeling　Vol. 50　No. 5　p. 934-946　2010/05/24　Research paper (scientific journal)

  15. Dynamic Programming Algorithms and Grammatical Modeling for Protein Beta-Sheet Prediction

    Yuki Kato, Tatsuya Akutsu, Hiroyuki Seki

    Journal of Computational Biology　Vol. 16　No. 7　p. 945-957　2009/07　Research paper (scientific journal)

  16. A grammatical approach to RNA–RNA interaction prediction

    Yuki Kato, Tatsuya Akutsu, Hiroyuki Seki

    Pattern Recognition　Vol. 42　No. 4　p. 531-538　2009/04　Research paper (scientific journal)

  17. Synaptotagmin 4 supports spontaneous axon sprouting after spinal cord injury

    Kyoka Higuchi, Akiko Uyeda, Lili Quan, Shogo Tanabe, Yuki Kato, Yukio Kawahara, Rieko Muramatsu

    The Journal of Neuroscience　p. e1593232024-e1593232024　2024/09/12　Research paper (scientific journal)

    Publisher: Society for Neuroscience

  18. RNA editing of AZIN1 coding sites is catalyzed by ADAR1 p150 after splicing

    Yanfang Xing, Taisuke Nakahama, Yuke Wu, Maal Inoue, Jung In Kim, Hiroyuki Todo, Toshiharu Shibuya, Yuki Kato, Yukio Kawahara

    Journal of Biological Chemistry　p. 104840-104840　2023/05　Research paper (scientific journal)

    Publisher: Elsevier BV

  19. An Aicardi-Goutières Syndrome–Causative Point Mutation in Adar1 Gene Invokes Multiorgan Inflammation and Late-Onset Encephalopathy in Mice

    Maal Inoue, Taisuke Nakahama, Ryuichiro Yamasaki, Toshiharu Shibuya, Jung In Kim, Hiroyuki Todo, Yanfang Xing, Yuki Kato, Eiichi Morii, Yukio Kawahara

    The Journal of Immunology　p. ji2100526-ji2100526　2021/11/12　Research paper (scientific journal)

    Publisher: The American Association of Immunologists

  20. Dimethylarginine dimethylaminohydrolase 1 as a novel regulator of oligodendrocyte differentiation in the central nervous system remyelination

    Akiko Uyeda, Lili Quan, Yuki Kato, Nagaaki Muramatsu, Shogo Tanabe, Kazuhisa Sakai, Noritaka Ichinohe, Yukio Kawahara, Tatsunori Suzuki, Rieko Muramatsu

    Glia　Vol. 69　No. 11　p. 2591-2604　2021/11　Research paper (scientific journal)

    Publisher: Wiley

  21. RNA editing at a limited number of sites is sufficient to prevent MDA5 activation in the mouse brain

    Jung In Kim, Taisuke Nakahama, Ryuichiro Yamasaki, Pedro Henrique Costa Cruz, Tuangtong Vongpipatana, Maal Inoue, Nao Kanou, Yanfang Xing, Hiroyuki Todo, Toshiharu Shibuya, Yuki Kato, Yukio Kawahara

    PLOS Genetics　Vol. 17　No. 5　p. e1009516-e1009516　2021/05/13　Research paper (scientific journal)

    Publisher: Public Library of Science (PLoS)

  22. ADAR1 Regulates Early T Cell Development via MDA5-Dependent and -Independent Pathways.

    Tuangtong Vongpipatana, Taisuke Nakahama, Toshiharu Shibuya, Yuki Kato, Yukio Kawahara

    Journal of immunology (Baltimore, Md. : 1950)　Vol. 204　No. 8　p. 2156-2168　2020/04/15　Research paper (scientific journal)

  23. A comparative analysis of ADAR mutant mice reveals site-specific regulation of RNA editing.

    Pedro Henrique Costa Cruz, Yuki Kato, Taisuke Nakahama, Toshiharu Shibuya, Yukio Kawahara

    RNA (New York, N.Y.)　2020/01/15

  24. Myotube-derived factor promotes oligodendrocyte precursor cell proliferation

    Akino Nakasone, Rieko Muramatsu, Yuki Kato, Yukio Kawahara, Toshihide Yamashita

    Biochemical and Biophysical Research Communications　Vol. 500　No. 3　p. 609-613　2018/06/07　Research paper (scientific journal)

    Publisher: Elsevier B.V.

  25. Rtools: a web server for various secondary structural analyses on single RNA sequences

    Michiaki Hamada, Yukiteru Ono, Hisanori Kiryu, Kengo Sato, Yuki Kato, Tsukasa Fukunaga, Ryota Mori, Kiyoshi Asai

    Nucleic Acids Research　Vol. 44　No. W1　p. W302-W307　2016/07　Research paper (scientific journal)

  26. DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition

    Kengo Sato, Yuki Kato, Tatsuya Akutsu, Kiyoshi Asai, Yasubumi Sakakibara

    Bioinformatics　Vol. 28　No. 24　p. 3218-3224　2012/12　Research paper (scientific journal)

  27. Using binding profiles to predict binding sites of target RNAs

    UNYANEE POOLSAP, YUKI KATO, KENGO SATO, TATSUYA AKUTSU

    Journal of Bioinformatics and Computational Biology　Vol. 09　No. 06　p. 697-713　2011/12　Research paper (scientific journal)

  28. A grammar-based approach to RNA pseudoknotted structure prediction for aligned sequences

    Nobuyoshi Mizoguchi, Yuki Kato, Hiroyuki Seki

    2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)　2011/02　Research paper (international conference proceedings)

    Publisher: IEEE

  29. Dynamic programming algorithms for RNA structure prediction with binding sites

    UNYANEE POOLSAP, YUKI KATO, TATSUYA AKUTSU

    Biocomputing 2010　p. 98-107　2009/10　Research paper (international conference proceedings)

    Publisher: WORLD SCIENTIFIC

  30. Prediction of RNA secondary structure with pseudoknots using integer programming

    Unyanee Poolsap, Yuki Kato, Tatsuya Akutsu

    BMC Bioinformatics　Vol. 10　No. S1　2009/01　Research paper (scientific journal)

  31. On the generative power of multiple context-free grammars and macro grammars

    Hiroyuki Seki, Yuki Kato

    IEICE TRANSACTIONS ON INFORMATION AND SYSTEMS　Vol. E91D　No. 2　p. 209-221　2008/02　Research paper (scientific journal)

  32. Prediction of Protein Beta-Sheets: Dynamic Programming versus Grammatical Approach

    Yuki Kato, Tatsuya Akutsu, Hiroyuki Seki

    Pattern Recognition in Bioinformatics　p. 66-77　2008　Research paper (international conference proceedings)

    Publisher: Springer Berlin Heidelberg

  33. RNA pseudoknotted structure prediction using stochastic multiple context-free grammar

    Yuki Kato, Hiroyuki Seki, Tadao Kasami

    IPSJ Transactions on Bioinformatics　Vol. 47　No. SIG17 (TBIO1)　p. 12-21　2006/11　Research paper (scientific journal)

    Publisher: Information Processing Society of Japan (IPSJ)

  34. On the generative power of grammars for RNA secondary structure

    Y Kato, H Seki, T Kasammi

    IEICE TRANSACTIONS ON INFORMATION AND SYSTEMS　Vol. E88D　No. 1　p. 53-64　2005/01　Research paper (scientific journal)

Misc. 34

  1. シングルセルデータを用いた細胞動態解析アルゴリズムの開発

    加藤 有己

    NGS EXPO 2022　2022/10　Research paper, summary (national, other academic conference)

  2. 複雑なRNA２次構造予測のための高速計算ソフトウェアの開発と今後の展開

    加藤 有己

    次世代バイオインフォマティクス研究会　2011/08　Research paper, summary (national, other academic conference)

  3. RNA Secondary Structure Prediction Based on Formal Grammars

    KATO Yuki, SEKI Hiroyuki, AKUTSU Tatsuya

    IEICE technical report　Vol. 107　No. 354　p. 7-16　2007/11/20　Research paper, summary (national, other academic conference)

    Publisher: The Institute of Electronics, Information and Communication Engineers

  4. Stochastic Multiple Context-Free Grammar for RNA Pseudoknot Modeling

    Yuki Kato, Hiroyuki Seki, Tadao Kasami

    8th International Workshop on Tree Adjoining Grammar and Related Formalisms　2006/07　Research paper, summary (international conference)

  5. Subclasses of Tree Adjoining Grammar for RNA Secondary Structure

    Yuki Kato, Hiroyuki Seki, Tadao Kasami

    7th International Workshop on Tree Adjoining Grammar and Related Formalisms　2004/05　Research paper, summary (international conference)

  6. Predicting cell states using data-driven dynamical systems

    Kaho Hitomi, Yuki Kato

    2025年日本バイオインフォマティクス学会年会 (IIBMP2025)　2025/09　Research paper, summary (national, other academic conference)

  7. Prediction of brain myelin status from pulmonary function measurements

    Kou Nishikubo, Kaho Hitomi, Kyoka Higuchi, Reiichi Sugihara, Yuki Kato, Rieko Muramatsu

    2025/09　Research paper, summary (national, other academic conference)

  8. 肺機能測定による脳内の髄鞘状態の予測

    西窪 航, 人見 花帆, 樋口 京香, 杉原 礼一, 加藤 有己, 村松 里衣子

    2025/06　Research paper, summary (national, other academic conference)

  9. 教師あり学習による肺機能情報からの髄鞘形態予測

    樋口 京香, 人見 花帆, 西窪 航, 杉原 礼一, 加藤 有己, 村松 里衣子

    第81回情報処理学会バイオ情報学研究会　2025/03　Research paper, summary (national, other academic conference)

  10. グラフ埋め込みに基づく空間オミクス解析手法の開発

    杉原 礼一, 加藤 有己, 河原 行郎

    NGS EXPO 2024　2024/09　Meeting report

  11. A graph embedding approach to spatial omics analysis

    Reiichi Sugihara, Yuki Kato, Yukio Kawahara

    第4回関西RNAクラブ　2024/08　Meeting report

  12. A random walk approach to cluster and integrate spatial transcriptomics data

    Reiichi Sugihara, Yuki Kato, Yukio Kawahara

    第25回日本RNA学会年会　2024/06　Meeting report

  13. Elucidation of the pathogenic mechanism underlying Aicardi-Goutieres syndrome-like encephalopathy caused by mutations in the RNA-editing enzyme ADAR1

    Hyebin Yoo, Taisuke Nakahama, Yuki Kato, Yukio Kawahara

    第25回日本RNA学会年会　2024/06　Meeting report

  14. グラフ埋め込みと最適輸送を用いた空間的遺伝子発現情報のアラインメント

    杉原 礼一, 加藤 有己, 河原 行郎

    第77回情報処理学会バイオ情報学研究会　2024/03　Research paper, summary (national, other academic conference)

  15. 1細胞RNA-seqデータを用いた細胞状態遷移経路アラインメント法の開発

    杉原 礼一, 加藤 有己, 森 智弥, 河原 行郎

    RNA Frontier Meeting 2022　2022/10　Research paper, summary (national, other academic conference)

  16. Prediction of RNA secondary structure including pseudoknots for long sequences

    Kengo Sato, Yuki Kato

    第68回情報処理学会バイオ情報学研究会, 情報処理学会研究報告　2021/11　Research paper, summary (national, other academic conference)

  17. Deep learning-based prediction of potential RNA G-quadruplexes with D-Quartet

    Yuki Kato, Kengo Sato, Jakob Hull Havgaard, Yukio Kawahara

    29th Conference on Intelligent Systems for Molecular Biology and the 20th European Conference on Computational Biology (ISMB/ECCB2021)　2021/07　Research paper, summary (international conference)

  18. CAPITALによるシングルセルデータの疑似時系列比較解析

    加藤 有己, 杉原 礼一, 森 智弥, 河原 行郎

    第43回日本分子生物学会年会　2020/12　Research paper, summary (national, other academic conference)

  19. Alignment of complex single-cell trajectories with CAPITAL

    Yuki Kato, Reiichi Sugihara, Tomoya Mori, Yukio Kawahara

    28th Conference on Intelligent Systems for Molecular Biology (ISMB2020)　2020/07　Research paper, summary (international conference)

  20. 複雑な細胞運命比較のための時系列１細胞RNA-seqデータのアラインメント

    加藤 有己, 杉原 礼一, 森 智弥, 河原 行郎

    第42回日本分子生物学会年会　Vol. 1PW-14-2　2019/12　Research paper, summary (national, other academic conference)

  21. Evaluating Effectiveness of Accessibility to Infer RNA-RNA Interactions

    Yuki Kato, Tomoya Mori, Kengo Sato, Shingo Maegawa, Hiroshi Hosokawa, Tatsuya Akutsu

    IPSJ SIG technical reports　Vol. 2013　No. 3　p. 1-2　2013/09/12

    Publisher: Information Processing Society of Japan (IPSJ)

  22. RNA structural alignments via dual decomposition

    Kengo Sato, Yuki Kato, Tatsuya Akutsu, Kiyoshi Asai, Yasubumi Sakakibara

    IPSJ SIG technical reports　Vol. 2012　No. 5　p. 1-6　2012/03/21

    Publisher: Information Processing Society of Japan (IPSJ)

  23. RNA Pseudoknot Prediction Based on Maximizing Expected Accuracy

    SATO KENGO, KATO YUKI, AKUTSU TATSUYA, ASAI KIYOSHI

    Vol. 2010　No. 6　p. 1-6　2010/07/21

    Publisher: 情報処理学会

  24. RNA-RNA Interaction Prediction Using Integer Programming with Threshold Cut

    KATO YUKI, SATO KENGO, HAMADA MICHIAKI, WATANABE YOSHIHIDE, ASAI KIYOSHI, AKUTSU TATSUYA

    Vol. 2010　No. 32　p. 1-8　2010/06/11

    Publisher: 情報処理学会

  25. Pairwise RNA Pseudoknotted Structure Prediction Based on Stochastic Grammar

    Nobuyoshi Mizoguchi, Yuki Kato, Hiroyuki Seki

    20th International Conference on Genome Informatics　2009/12　Research paper, summary (national, other academic conference)

  26. Prediction of RNA Secondary Structures with Binding Sites Using Dynamic Programming Algorithm

    POOLSAP UNYANEE, KATO YUKI, AKUTSU TATSUYA

    Vol. 2009　No. 13　p. 1-8　2009/05/18

    Publisher: 情報処理学会

  27. Prediction of RNA Secondary Structure with Pseudoknots Using Pair Stochastic Multiple Context-Free Grammar

    TANAKA Sho, KATO Yuki, SEKI Hiroyuki

    IPSJ SIG technical reports　Vol. 2009　No. 25　p. 37-40　2009/02/26

    Publisher: Information Processing Society of Japan (IPSJ)

  28. Prediction of RNA Secondary Structure with Pseudoknots Using Integer Programming

    POOLSAP Unyanee, KATO Yuki, AKUTSU Tatsuya

    IPSJ SIG Notes　Vol. 2007　No. 128　p. 137-142　2007/12/21

    Publisher: Information Processing Society of Japan (IPSJ)

  29. RNA-RNA Interaction Prediction Based on Integer Programming

    ICHIHARA Keitaro, KATO Yuki, WATANABE Yoshihide

    IPSJ SIG Notes　Vol. 2007　No. 128　p. 121-127　2007/12/21

    Publisher: Information Processing Society of Japan (IPSJ)

  30. Prediction of RNA Secondary Structure with Pseudoknots Using Integer Programming

    Poolsap Unyanee, Kato Yuki, Akutsu Tatsuya

    IPSJ SIG technical reports　Vol. 2007　No. 128　p. 137-142　2007/12/21

    Publisher: Information Processing Society of Japan (IPSJ)

  31. RNA-RNA Interaction Prediction Based on Integer Programming

    Ichihara Keitaro, Kato Yuki, Watanabe Yoshihide

    IPSJ SIG technical reports　Vol. 2007　No. 128　p. 121-127　2007/12/21

    Publisher: Information Processing Society of Japan (IPSJ)

  32. Secondary Structure Prediction of Interacting RNAs: A Grammatical Approach

    Kato Yuki, Akutsu Tatsuya, Seki Hiroyuki

    IPSJ SIG technical reports　Vol. 2007　No. 128　p. 129-136　2007/12/21

    Publisher: Information Processing Society of Japan (IPSJ)

  33. RNA Pseudoknotted Structure Prediction Using Stochastic Multiple Context-Free Grammar

    KATO Yuki, SEKI Hiroyuki, KASAMI Tadao

    IPSJ SIG technical reports　Vol. 2006　No. 99　p. 33-40　2006/09/15

    Publisher: Information Processing Society of Japan (IPSJ)

  34. Stochastic Multiple Context-Free Grammar for RNA Structure Analysis

    KATO Yuki, SEKI Hiroyuki

    IPSJ SIG technical reports　Vol. 2005　No. 128　p. 7-14　2005/12/22

    Publisher: Information Processing Society of Japan (IPSJ)