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Seno Shigeto

瀬尾 茂人

Graduate School of Information Science and Technology Department of Bioinformatic Engineering, Associate Professor

Education

  • 2003/04 - 2006/03, Osaka University, Graduate School of Information Science and Technology, Department of Bioinformatic Engineering
  • 2001/04 - 2003/03, Osaka University, Graduate School of Engineering Science
  • 1997/04 - 2001/03, Osaka University, School of Engineering Science Direct Affiliates, Department of Information and Computer Sciences

Research History

  • 2023/07 - Present, 大阪大学蛋白質研究所 蛋白質先端データ科学研究センター(兼任)
  • 2023/07 - Present, 大阪大学微生物病研究所 バイオインフォマティクスセンター(兼任)
  • 2023/04 - Present, 脳情報通信融合研究センター(兼任)
  • 2018/04 - Present, 大阪大学データビリティフロンティア機構(兼任)
  • 2017/11 - Present, Osaka University, Graduate School of Information Science and Technology
  • 2007/04 - 2017/11, Osaka University, Graduate School of Information Science and Technology
  • 2006/04 - 2007/03, Osaka University, Graduate School of Information Science and Technology
  • 2004/04 - 2005/03, 日本学術振興会, 特別研究員

Research Areas

  • Informatics, Biological, health, and medical informatics
  • Life sciences, Systems genomics

Professional Memberships

  • JAPANESE SOCIETY FOR BIOINFORMATICS
  • INFORMATION PROCESSING SOCIETY OF JAPAN

Papers

  • Biodiversity and Constrained Information Dynamics in Ecosystems: A Framework for Living Systems, Kazufumi Hosoda,Shigeto Seno,Rikuto Kamiura,Naomi Murakami,Michio Kondoh, Entropy, 2023/12
  • Synthetic model ecosystem of 12 cryopreservable microbial species allowing for a noninvasive approach., Kazufumi Hosoda,Shigeto Seno,Naomi Murakami,Hideo Matsuda,Yutaka Osada,Rikuto Kamiura,Michio Kondoh, Bio Systems, Vol. 235, p. 105087-105087, 2023/11/19
  • Cell Tracking via Reinforcement Learning with Microscopic Image Simulator, Toru Nagamura,Shigeto Seno,Hironori Shigeta,Tomohiro Mashita,Hideo Matsuda, Proceedings of the 2023 13th International Conference on Biomedical Engineering and Technology, ACM, 2023/06/15
  • Pseudotime-based Deep Learning of Gene Regulatory Relationships from Single-Cell Expression Data, Koki Nishi,Junko Yoshida,Shigeto Seno,Kyoji Horie,Hideo Matsuda, Proceedings of the 2023 13th International Conference on Biomedical Engineering and Technology, ACM, 2023/06/15
  • A Cell Tracking Method for Dynamic Analysis of Immune Cells Based on Deep Learning, Aya Watanabe,Kenji Fujimoto,Hironori Shigeta,Shigeto Seno,Yutaka Uchida,Masaru Ishii,Hideo Matsuda, International Journal of Machine Learning, EJournal Publishing, Vol. 13, No. 2, p. 64-69, 2023/04
  • Identification of a unique subset of tissue-resident memory CD4+ T cells in Crohn's disease., Takehito Yokoi,Mari Murakami,Takako Kihara,Shigeto Seno,Mitsuru Arase,James Badger Wing,Jonas Nørskov Søndergaard,Ryuichi Kuwahara,Tomohiro Minagawa,Eri Oguro-Igashira,Daisuke Motooka,Daisuke Okuzaki,Ryota Mori,Atsuyo Ikeda,Yuki Sekido,Takahiro Amano,Hideki Iijima,Keiichi Ozono,Tsunekazu Mizushima,Seiichi Hirota,Hiroki Ikeuchi,Kiyoshi Takeda, Proceedings of the National Academy of Sciences of the United States of America, Vol. 120, No. 1, 2023/01/03
  • Combination of WFDC2, CHI3L1, and KRT19 in Plasma Defines a Clinically Useful Molecular Phenotype Associated with Prognosis in Critically Ill COVID-19 Patients., Takeshi Ebihara,Tsunehiro Matsubara,Yuki Togami,Hisatake Matsumoto,Jotaro Tachino,Hiroshi Matsuura,Takashi Kojima,Fuminori Sugihara,Shigeto Seno,Daisuke Okuzaki,Haruhiko Hirata,Hiroshi Ogura, Journal of clinical immunology, Vol. 43, No. 2, p. 1-13, 2022/11/04
  • Myeloid cell-specific ablation of Runx2 gene exacerbates post-infarct cardiac remodeling., Masashi Tomimatsu,Kotaro Matsumoto,Moe Ashizuka,Shohei Kumagai,Shota Tanaka,Takafumi Nakae,Kosei Yokota,Shunsuke Kominami,Ryota Kajiura,Daisuke Okuzaki,Daisuke Motooka,Aki Shiraishi,Takaya Abe,Hideo Matsuda,Yoshiaki Okada,Makiko Maeda,Shigeto Seno,Masanori Obana,Yasushi Fujio, Scientific reports, Vol. 12, No. 1, p. 16656-16656, 2022/10/05
  • Development of clinical phenotypes and biological profiles via proteomic analysis of trauma patients, Jotaro Tachino,Hisatake Matsumoto,Fuminori Sugihara,Shigeto Seno,Daisuke Okuzaki,Tetsuhisa Kitamura,Sho Komukai,Yoshiyuki Kido,Takashi Kojima,Yuki Togami,Yusuke Katayama,Yuko Nakagawa,Hiroshi Ogura, Critical Care, Springer Science and Business Media LLC, Vol. 26, No. 1, 2022/08/06
  • MPP6 stimulates both RRP6 and DIS3 to degrade a specified subset of MTR4-sensitive substrates in the human nucleus., Naoko Fujiwara,Maki Shigemoto,Mizuki Hirayama,Ken-Ichi Fujita,Shigeto Seno,Hideo Matsuda,Masami Nagahama,Seiji Masuda, Nucleic acids research, Vol. 50, No. 15, p. 8779-8806, 2022/07/29
  • A Novel Method for Gene Regulatory Network Inference with Pseudotime Data Using Information Criterion, Shuhei Yao,Kaito Uemura,Shigeto Seno,Hideo Matsuda, International Jounral of Bioscience, Biochemistry and Bioinformatics, Vol. 12, No. 3, p. 43-52, 2022/07
  • Relayed signaling between mesenchymal progenitors and muscle stem cells ensures adaptive stem cell response to increased mechanical load, Akihiro Kaneshige,Takayuki Kaji,Lidan Zhang,Hayato Saito,Ayasa Nakamura,Tamaki Kurosawa,Madoka Ikemoto-Uezumi,Kazutake Tsujikawa,Shigeto Seno,Masatoshi Hori,Yasuyuki Saito,Takashi Matozaki,Kazumitsu Maehara,Yasuyuki Ohkawa,Michael Potente,Shuichi Watanabe,Thomas Braun,Akiyoshi Uezumi,So-ichiro Fukada, Cell Stem Cell, Elsevier BV, Vol. 29, No. 2, p. 265-280, 2021/12/02
  • Osteoclasts adapt to physioxia perturbation through DNA demethylation, Keizo Nishikawa,Shigeto Seno,Toshitada Yoshihara,Ayako Narazaki,Yuki Sugiura,Reito Shimizu,Junichi Kikuta,Reiko Sakaguchi,Norio Suzuki,Norihiko Takeda,Hiroaki Semba,Masamichi Yamamoto,Daisuke Okuzaki,Daisuke Motooka,Yasuhiro Kobayashi,Makoto Suematsu,Haruhiko Koseki,Hideo Matsuda,Masayuki Yamamoto,Seiji Tobita,Yasuo Mori,Masaru Ishii, EMBO reports, EMBO, Vol. 22, No. 12, 2021/10/18
  • SC-JNMF: Single-cell clustering integrating multiple quantification methods based on joint non-negative matrix factorization, Mikio Shiga,Shigeto Seno,Makoto Onizuka,Hideo Matsuda, PeerJ, Cold Spring Harbor Laboratory, Vol. 9, 2021/08/27
  • A CNN-based cell tracking method for multi-slice intravital imaging data., Kenji Fujimoto,Tsubasa Mizugaki,Utkrisht Rajkumar,Hironori Shigeta,Shigeto Seno,Yutaka Uchida,Masaru Ishii,Vineet Bafna,Hideo Matsuda, Proceedings of the 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics 2021, ACM, p. 35-7, 2021/08
  • SLPI is a critical mediator that controls PTH-induced bone formation., Akito Morimoto,Junichi Kikuta,Keizo Nishikawa,Takao Sudo,Maki Uenaka,Masayuki Furuya,Tetsuo Hasegawa,Kunihiko Hashimoto,Hiroyuki Tsukazaki,Shigeto Seno,Akira Nakamura,Daisuke Okuzaki,Fuminori Sugihara,Akinori Ninomiya,Takeshi Yoshimura,Ryoko Takao-Kawabata,Hideo Matsuda,Masaru Ishii, Nature communications, Vol. 12, No. 1, p. 2136-2136, 2021/04/09
  • Determining homologous recombination deficiency scores with whole exome sequencing and their association with responses to neoadjuvant chemotherapy in breast cancer., Seung Jin Kim,Yoshiaki Sota,Yasuto Naoi,Keiichiro Honma,Naofumi Kagara,Tomohiro Miyake,Masafumi Shimoda,Tomonori Tanei,Shigeto Seno,Hideo Matsuda,Shinzaburo Noguchi,Kenzo Shimazu, Translational oncology, Vol. 14, No. 2, p. 100986-100986, 2021/02
  • Dlk1 regulates quiescence in calcitonin receptor-mutant muscle stem cells., Lidan Zhang,Manami Kubota,Ayasa Nakamura,Takayuki Kaji,Shigeto Seno,Akiyoshi Uezumi,Ditte Caroline Andersen,Charlotte Harken Jensen,So-Ichiro Fukada, Stem cells (Dayton, Ohio), Vol. 39, No. 3, p. 306-317, 2020/12/08
  • Correlated chromosomal periodicities according to the growth rate and gene expression, Liu Liu,Masaomi Kurokawa,Motoki Nagai,Shigeto Seno,Bei-Wen Ying, Scientific Reports, Springer Science and Business Media LLC, Vol. 10, No. 1, 2020/12
  • Development of an intravital imaging system for the synovial tissue reveals the dynamics of CTLA-4 Ig in vivo, Tetsuo Hasegawa,Junichi Kikuta,Takao Sudo,Erika Yamashita,Shigeto Seno,Tsutomu Takeuchi,Masaru Ishii, Scientific Reports, Springer Science and Business Media LLC, Vol. 10, No. 1, p. 13480-13480, 2020/12
  • A model ecosystem of twelve cryopreservable microbial species allowing for a non-invasive approach, Kazufumi Hosoda,Shigeto Seno,Naomi Murakami,Hideo Matsuda,Yutaka Osada,Michio Kondoh, Cold Spring Harbor Laboratory, 2020/10/23
  • Glycerol kinase stimulates uncoupling protein 1 expression by regulating fatty acid metabolism in beige adipocytes., Mari Iwase,Soshi Tokiwa,Shigeto Seno,Takako Mukai,Yu-Sheng Yeh,Haruya Takahashi,Wataru Nomura,Huei-Fen Jheng,Sigenobu Matsumura,Tatsuya Kusudo,Naoki Osato,Hideo Matsuda,Kazuo Inoue,Teruo Kawada,Tsuyoshi Goto, The Journal of biological chemistry, Vol. 295, No. 20, p. 7033-7045, 2020/05/15
  • Anti-Inflammatory and Antioxidative Properties of Isoflavones Provide Renal Protective Effects Distinct from Those of Dietary Soy Proteins against Diabetic Nephropathy., Huei-Fen Jheng,Kanako Hayashi,Yasuki Matsumura,Teruo Kawada,Shigeto Seno,Hideo Matsuda,Kazuo Inoue,Wataru Nomura,Haruya Takahashi,Tsuyoshi Goto, Molecular nutrition & food research, Vol. 64, No. 10, 2020/05
  • In vivo dynamic analysis of BMP-2-induced ectopic bone formation, Kunihiko Hashimoto,Takashi Kaito,Masayuki Furuya,Shigeto Seno,Daisuke Okuzaki,Junichi Kikuta,Hiroyuki Tsukazaki,Hideo Matsuda,Hideki Yoshikawa,Masaru Ishii, SCIENTIFIC REPORTS, NATURE PUBLISHING GROUP, Vol. 10, No. 1, 2020/03
  • Long non-coding RNA 2310069B03Rik functions as a suppressor of Ucp1 expression under prolonged cold exposure in murine beige adipocytes., Mari Iwase,Shoko Sakai,Shigeto Seno,Yu-Sheng Yeh,Tony Kuo,Haruya Takahashi,Wataru Nomura,Huei-Fen Jheng,Paul Horton,Naoki Osato,Hideo Matsuda,Kazuo Inoue,Teruo Kawada,Tsuyoshi Goto, Bioscience, biotechnology, and biochemistry, Vol. 84, No. 2, p. 305-313, 2020/02
  • URH49 exports mRNA by remodeling complex formation and mediating the NXF1-dependent pathway., Ken-Ichi Fujita,Tomohiro Yamazaki,Kotaro Harada,Shigeto Seno,Hideo Matsuda,Seiji Masuda, Biochimica et biophysica acta. Gene regulatory mechanisms, Vol. 1863, No. 2, p. 194480-194480, 2020/01/07
  • Migration arrest of chemoresistant leukemia cells mediated by MRTF-SRF pathway., Maho Morimatsu,Erika Yamashita,Shigeto Seno,Takao Sudo,Junichi Kikuta,Hiroki Mizuno,Daisuke Okuzaki,Daisuke Motooka,Masaru Ishii, Inflammation and regeneration, Vol. 40, p. 15-15, 2020
  • Tracking and Analysis of FUCCI-Labeled Cells Based on Particle Filters and Time-to-Event Analysis, Kenji Fujimoto,Shigeto Seno,Hironori Shigeta,Tomohiro Mashita,Masaru Ishii,Hideo Matsuda, International Journal of Bioscience, Biochemistry and Bioinformatics, International Academy Publishing (IAP), Vol. 10, No. 2, p. 94-109, 2020
  • Thrombomodulin induces anti-inflammatory effects by inhibiting the rolling adhesion of leukocytes in vivo, Shino Nishizawa,Junichi Kikuta,Shigeto Seno,Masahiro Kajiki,Ryuichi Tsujita,Hiroki Mizuno,Takao Sudo,Tomoka Ao,Hideo Matsuda,Masaru Ishii, Journal of Pharmacological Sciences, 2020/01
  • Food-Derived Compounds Apigenin and Luteolin Modulate mRNA Splicing of Introns with Weak Splice Sites., Masashi Kurata,Naoko Fujiwara,Ken-Ichi Fujita,Yasutaka Yamanaka,Shigeto Seno,Hisato Kobayashi,Yusaku Miyamae,Nobuyuki Takahashi,Yasuyuki Shibuya,Seiji Masuda, iScience, Vol. 22, p. 336-352, 2019/12/20
  • Single-cell transcriptome analysis of mouse leukocytes in inflammatory stimulation, Naoki Osato,Hironori Shigeta,Shigeto Seno,Yutaka Uchida,Junichi Kikuta,Masaru Ishii,Hideo Matsuda, 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), IEEE, p. 1229-1231, 2019/11
  • Analyzing Leukocyte Migration Trajectories by Deformable Image Matching, Hironori Shigeta,Shigeto Seno,Shino Nishizawa,Yutaka Uchida,Junichi Kikuta,Masaru Ishii,Hideo Matsuda, IEEE 19th International Conference on Bioinformatics and Bioengineering (BIBE), p. 94-98, 2019/10
  • Cell Tracking based on Deep Learning with Depth Information for Intravital Fluorescence Imaging Data, Ayato Shimada,Shigeto Seno,Hironori Shigeta,Tomohiro Mashita,Yutaka Uchida,Masaru Ishii,Hideo Matsuda, IPSJ, Transactions on Mathematical Modeling and its Applications, Vol. 12, No. 2, p. 82-91, 2019/07
  • Improvement of detection performance of fusion genes from RNA-seq data by clustering short reads”, Yoshiaki Sota,Shigeto Seno,Hironori Shigeta,Naoki Osato,Masafumi Shimoda,Shinzabro Noguchi,Hideo Matsuda, Journal of Bioinformatics and Computational Biology, Vol. 17, No. 3, p. 1940008-1940008, 2019/07
  • In vivo Multicolor Imaging with Fluorescent Probes Revealed the Dynamics and Function of Osteoclast Proton Pumps, Masafumi Minoshima,Junichi Kikuta,Yuta Omori,Shigeto Seno,Riko Suehara,Hiroki Maeda,Hideo Matsuda,Masaru Ishii,Kazuya Kikuchi, ACS Central Science, Vol. 5, No. 6, p. 1059-1066, 2019/05
  • Asymmetric Integration of Single-Cell Transcriptomic Data using Latent Dirichlet Allocation and Procrustes Analysis, Mitsuhiro Eto,Wataru Hirota,Shigeto Seno,Hideo Matsuda, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), IEEE, p. 2129-2135, 2018/12
  • Roles of Enhancer RNAs in RANKL-induced Osteoclast Differentiation Identified by Genome-wide Cap-analysis of Gene Expression using CRISPR, Yukako Sakaguchi,Keizo Nishikawa,Shigeto Seno,Hideo Matsuda,Hiroshi Takayanagi,Masaru Ishii, Scientific Reports, Nature Publishing Group, Vol. 8, No. 1, 2018/12/01
  • 細胞画像のセグメンテーション精度向上のための画像類推を用いた学習データ拡張, 赤沢 秀樹,渡邊 誓旅,繁田 浩功,間下 以大,瀬尾 茂人,松田 秀雄, 2018/08
  • Rising Stars in Skeletal Biology 二光子励起生体イメージングを用いた骨芽細胞・破骨細胞コミュニケーションの解明, 古家 雅之,菊田 順一,瀬尾 茂人,前田 拓樹,吉川 秀樹,石井 優, 日本骨代謝学会学術集会プログラム抄録集, (一社)日本骨代謝学会, Vol. 36回, p. 117-117, 2018/07
  • The dipeptidyl peptidase‐4 (DPP‐4) inhibitor teneligliptin enhances brown adipose tissue function, thereby preventing obesity in mice, Kenichiro Takeda,Honami Sawazaki,Haruya Takahashi,YuSheng Yeh,HueiFen Jheng,Wataru Nomura,Takeshi Ara,Nobuyuki Takahashi,Shigeto Seno,Naoki Osato,Hideo Matsuda,Teruo Kawada,Tsuyoshi Goto, FEBS openbio, Vol. 8, No. 11, 2018/07
  • Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells, Yoichi Takenaka,Kazuma Mikami,Shigeto Seno,Hideo Matsuda, BMC Bioinformatics, BioMed Central Ltd., Vol. 19, No. 89, p. 49-59, 2018/05/08
  • 生体骨イメージング技術と計測解析の最前線 生体骨イメージングで見る破骨細胞・骨芽細胞間の4D相互作用, 古家 雅之,菊田 順一,瀬尾 茂人,前田 拓樹,吉川 秀樹,石井 優, 日本骨形態計測学会雑誌, 日本骨形態計測学会, Vol. 28, No. 2, p. S57-S57, 2018/05
  • Chromatin 3D reconstruction from chromosomal contacts using a genetic algorithm, Kapilevich, V.,Seno, S.,Matsuda, H.,Takenaka, Y., IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 16, No. 5, 2018/03
  • A Phytol-Enriched Diet Activates PPAR-α in the Liver and Brown Adipose Tissue to Ameliorate Obesity-Induced Metabolic Abnormalities, Ji-Yeong An,Huei-Fen Jheng,Hiroyuki Nagai,Kohei Sanada,Haruya Takahashi,Mari Iwase,Natsumi Watanabe,Young-Il Kim,Aki Teraminami,Nobuyuki Takahashi,Rieko Nakata,Hiroyasu Inoue,Shigeto Seno,Hideo Mastuda,Teruo Kawada,Tsuyoshi Goto, Molecular Nutrition and Food Research, Wiley-VCH Verlag, Vol. 62, No. 6, 2018/03/01
  • Direct cell-cell contact between mature osteoblasts and osteoclasts dynamically controls their functions in vivo., Masayuki Furuya,Junichi Kikuta,Sayumi Fujimori,Shigeto Seno,Hiroki Maeda,Mai Shirazaki,Maki Uenaka,Hiroki Mizuno,Yoriko Iwamoto,Akito Morimoto,Kunihiko Hashimoto,Takeshi Ito,Yukihiro Isogai,Masafumi Kashii,Takashi Kaito,Shinsuke Ohba,Ung-Il Chung,Alexander C Lichtler,Kazuya Kikuchi,Hideo Matsuda,Hideki Yoshikawa,Masaru Ishii, Nature communications, Vol. 9, No. 1, p. 300-300, 2018/01/19
  • Detection of Fusion Genes from Human Breast Cancer Cell-line RNA-Seq Data Using Shifted Short Read Clustering, Yoshiaki Sota,Shigeto Seno,Hironori Shigeta,Naoki Osato,Masafumi Shimoda,Shinzaburo Noguchi,Hideo Matsuda, PROCEEDINGS 2018 IEEE 18TH INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOENGINEERING (BIBE), IEEE, p. 159-162, 2018
  • Diagnostic Assessment of Deep Learning Algorithms for Detection of Lymph Node Metastases in Women With Breast Cancer, Babak Ehteshami Bejnordi,Mitko Veta,Paul Johannes van Diest,Bram van Ginneken,Nico Karssemeijer,Geert Litjens,Jeroen A. W. M. van der Laak, JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, AMER MEDICAL ASSOC, Vol. 318, No. 22, p. 2199-2210, 2017/12
  • Bone marrow cavity segmentation using graph-cuts with wavelet-based texture feature, Hironori Shigeta,Tomohiro Mashita,Junichi Kikuta,Shigeto Seno,Haruo Takemura,Masaru Ishii,Hideo Matsuda, JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, IMPERIAL COLLEGE PRESS, Vol. 15, No. 5, 2017/10
  • Over-expression of PPARα in obese mice adipose tissue improves insulin sensitivity, Haruya Takahashi,Kohei Sanada,Hiroyuki Nagai,Yongjia Li,Yumeko Aoki,Takeshi Ara,Shigeto Seno,Hideo Matsuda,Rina Yu,Teruo Kawada,Tsuyoshi Goto, Biochemical and Biophysical Research Communications, Vol. 493, No. 1, p. 108-114, 2017/09
  • The hepatokine FGF21 is crucial for peroxisome proliferator-activated receptor-alpha agonist-induced amelioration of metabolic disorders in obese mice, Tsuyoshi Goto,Mariko Hirata,Yumeko Aoki,Mari Iwase,Haruya Takahashi,Minji Kim,Yongjia Li,Huei-Fen Jheng,Wataru Nomura,Nobuyuki Takahashi,Chu-Sook Kim,Rina Yu,Shigeto Seno,Hideo Matsuda,Megumi Aizawa-Abe,Ken Ebihara,Nobuyuki Itoh,Teruo Kawada, JOURNAL OF BIOLOGICAL CHEMISTRY, AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC, Vol. 292, No. 22, p. 9175-9190, 2017/06
  • A simple comparison of the extrinsic noise in gene expression between native and foreign regulations in Escherichia coli, Bei-Wen Ying,Shigeto Seno,Hideo Matsuda,Tetsuya Yomo, BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, ACADEMIC PRESS INC ELSEVIER SCIENCE, Vol. 486, No. 3, p. 852-857, 2017/05
  • Correlation between genome reduction and bacterial growth, Masaomi Kurokawa,Shigeto Seno,Hideo Matsuda,Bei-Wen Ying, DNA RESEARCH, OXFORD UNIV PRESS, Vol. 23, No. 6, p. 517-525, 2016/12
  • 模様特徴量とグラフカットを利用した生体骨組織の骨髄腔の領域分割, 繁田 浩功,間下 以大,菊田 順一,瀬尾 茂人,石井 優,松田 秀雄, 2016/09
  • ウェーブレット特徴量を用いた生体骨組織の骨髄腔の領域分割手法, 繁田浩功,間下以大,菊田順一,瀬尾茂人,竹村治雄,松田秀雄,石井優, 2016/06
  • Comparative Analysis of Transformation Methods for Gene Expression Profiles in Breast Cancer Datasets, Yoshiaki Sota,Shigeto Seno,Yoichi Takenaka,Shinzaburo Noguchi,Hideo Matsuda, 2016 IEEE 16TH INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOENGINEERING (BIBE), IEEE, p. 328-333, 2016
  • Proinflammatory cytokine interleukin-1 beta suppresses cold-induced thermogenesis in adipocytes, Tsuyoshi Goto,Supaporn Naknukool,Rieko Yoshitake,Yuki Hanafusa,Soshi Tokiwa,Yongjia Li,Tomoya Sakamoto,Takahiro Nitta,Minji Kim,Nobuyuki Takahashi,Rina Yu,Hiromi Daiyasu,Shigeto Seno,Hideo Matsuda,Teruo Kawada, CYTOKINE, ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD, Vol. 77, p. 107-114, 2016/01
  • A Bone Marrow Cavity Segmentation Method using Wavelet-based Texture Feature, Hironori Shigeta,Tomohiro Mashita,Junichi Kikutat,Shigeto Seno,Haruo Takemura,Hideo Matsuda,Masaru Ishii, 2016 23RD INTERNATIONAL CONFERENCE ON PATTERN RECOGNITION (ICPR), IEEE COMPUTER SOC, Vol. 15, No. 5, p. 2133-2138, 2016
  • 生体イメージング技術を駆使したトロンボモジュリンの新たな作用機序解明, 西澤 志乃,菊田 順一,瀬尾 茂人,松田 秀雄,石井 優, 日本生化学会大会・日本分子生物学会年会合同大会講演要旨集, (公社)日本生化学会, Vol. 88回・38回, p. [3T23p-05(3P0080)], 2015/12
  • Functional specialization in regulation and quality control in thermal adaptive evolution, Kazuma Yama,Yuki Matsumoto,Yoshie Murakami,Shigeto Seno,Hideo Matsuda,Kazuyoshi Gotoh,Daisuke Motooka,Shota Nakamura,Bei-Wen Ying,Tetsuya Yomo, GENES TO CELLS, WILEY-BLACKWELL, Vol. 20, No. 11, p. 943-955, 2015/11
  • Detecting shifts in gene regulatory networks during time-course experiments at single-time-point temporal resolution, Yoichi Takenaka,Shigeto Seno,Hideo Matsuda, JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, IMPERIAL COLLEGE PRESS, Vol. 13, No. 5, 2015/10
  • Evolutionary Consequence of a Trade-Off between Growth and Maintenance along with Ribosomal Damages, Bei-Wen Ying,Tomoya Honda,Saburo Tsuru,Shigeto Seno,Hideo Matsuda,Yasuaki Kazuta,Tetsuya Yomo, PLOS ONE, PUBLIC LIBRARY SCIENCE, Vol. 10, No. 8, 2015/08
  • コンポーネントツリーを用いたグローバルデータアソシエーションによる細胞追跡手法, Kohei Kurashige,Shigeto Seno,Tomohiro Mashita,Junichi Kikuta,Yoichi Takenaka,Masaru Ishii,Hideo Matsuda, 2015/06
  • A Bone-marrow Space Segmentation Method Using Graph-cuts, Information Processing Society of Japan (IPSJ), Vol. 8, No. 3, p. 18-27, 2015/03
  • 生体骨組織における骨髄腔画像のウェーブレット変換を用いた骨髄腔領域の認識手法, 繁田 浩功,間下 以大,金子 雄,菊田 順一,瀬尾 茂人,竹村 治雄,松田 秀雄,石井 優, 2015/01
  • Directed evolution of cell size in Escherichia coli, Mari Yoshida,Saburo Tsuru,Naoko Hirata,Shigeto Seno,Hideo Matsuda,Bei-Wen Ying,Tetsuya Yomo, BMC EVOLUTIONARY BIOLOGY, BIOMED CENTRAL LTD, Vol. 14, No. 1, 2014/12
  • Improvement approach of cell tracking accuracy by using inter-frame information, Kohei Kurashige,Shigeto Seno,Tomohiro Mashita,Junichi Kikuta,Yoichi Takenaka,Masaru Ishii,Hideo Matsuda, 2014/10
  • An automatic event detection method using semi-supervised learning for time-lapse imaging data, Kojiro Fukuda,Shigeto Seno,Tomohiro Mashita,Yoichi Takenaka,Masaru Ishii,Hideo Matsuda, 2014/10
  • 大域データ対応付けの反復実行による細胞追跡精度の改善手法, 藏重 昂平,福田浩二郎,瀬尾茂人,間下以大,竹中要一,松田秀雄, 情報処理学会研究報告, 2014/09
  • Metagenome fragment classification based onmultiple motif-occurrence profiles, Naoki Matsushita,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, PEERJ, PEERJ INC, Vol. 2, 2014/09
  • A Segmentation Method for Bone Marrow Cavity Imaging Using Graph Cuts, Tomohiro Mashita,Jun Usam,Hironori Shigeta,Yoshihiro Kuroda,Junichi Kikuta,Shigeto Senoo,Masaru Ishi,Hideo Matsuda,Haruo Takemura, 2014 1st Workshop on Pattern Recognition Techniques for Indirect Immunofluorescence Images, IEEE, 2014/08
  • タイムラプスイメージングによる細胞周期観測画像の時空間解析, 福田浩二郎,瀬尾茂人,間下以大,竹中要一,松田秀雄, 2014/06
  • マルチチャンネル蛍光顕微鏡動画のためのパーティクルフィルタを用いた細胞追跡手法, 小森康祐,瀬尾茂人,間下以大,竹中要一,松田秀雄, 第76回全国大会講演論文集, Vol. 2014, No. 1, p. 291-292, 2014/03
  • Gene expression scaled by distance to the genome replication site, Bei-Wen Ying,Saburo Tsuru,Shigeto Seno,Hideo Matsuda,Tetsuya Yomo, MOLECULAR BIOSYSTEMS, ROYAL SOC CHEMISTRY, Vol. 10, No. 3, p. 375-379, 2014
  • A Robust Method for Estimating Gene Regulatory Networks Using Multiple Time Series Gene Expression Profiles, Yukito Watanabe,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, 情報処理学会論文誌. 数理モデル化と応用, 一般社団法人情報処理学会, Vol. 6, No. 3, p. 151-162, 2013/12/27
  • Segmentation and Tracking Method of Cell Nuclei for Time-lapse Fluorescent Microscopy Images Based on Gaussian Mixture Model, Shigeto Seno,Tomohiro Mashita,Sakae Maeda,Yoichi Takenaka,Masaru Ishii,Hideo Matsuda, 情報処理学会論文誌. 数理モデル化と応用, 一般社団法人情報処理学会, Vol. 6, No. 3, p. 140-150, 2013/12/27
  • Integrative prediction of miRNA-mRNA interactions from high-throughput sequencing data, Tomoshige Ohno,Hiromi Daiyasu,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, RECOMB/ISCB Conference on Regulatory and Systems Genomics, with DREAM Challenges 2013, 2013/11
  • 経時観測蛍光画像からのモーションヒストリーイメージを用いた細胞分裂の検出方法, 福田浩二郎,瀬尾茂人,間下以大,前田栄,竹中要一,石井優,松田秀雄, 2013/08
  • Global Data Associationによる経時観察画像における破骨前駆細胞の自動追跡手法, 尾野貴広,瀬尾茂人,間下以大,竹中要一,石井優,松田秀雄, 2013/07
  • An estimation method for a cellular-state-specific gene regulatory network along tree-structured gene expression profiles, Ryo Araki,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, Gene, 1, Vol. 518, No. 1, p. 17-25, 2013/04/10
  • Multilevel comparative analysis of the contributions of genome reduction and heat shock to the Escherichia coli transcriptome, Bei-Wen Ying,Shigeto Seno,Fuyuro Kaneko,Hideo Matsuda,Tetsuya Yomo, BMC GENOMICS, BIOMED CENTRAL LTD, Vol. 14, 2013/01
  • 多色蛍光イメージングによる経時観測データのための細胞追跡手法, 瀬尾茂人,間下以大,前田栄,竹中要一,石井優,松田秀雄, 2012/12
  • Estimate Dynamic Gene Regulatory Networks in Adipocyte Differentiation for Detecting Changes of Gene Regulations by Splitting Time Course Data, Tomoyoshi Nakayama,Yoshiyuki Kido,Hiromi Daiyasu,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, 2012/12
  • 多色蛍光タイムラプスイメージングによる細胞周期観測データのための細胞自動追跡手法, 瀬尾茂人,間下以大,前田栄,竹中要一,石井優,松田秀雄, 2012/11
  • Automatic cell tracking for time-lapse fluorescent images of cell cycle, Shigeto Seno,Sakae Maeda,Tomohiro Mashita,Yoichi Takenaka,Masaru Ishii,Hideo Matsuda, 2012/10
  • Estimation of Dynamic Gene Regulatory Networks for Cell Differentiation by Splitting Time Course Data, Tomoyoshi Nakayama,Yoshiyuki Kido,Hiromi Daiyasu,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, 2012/10
  • A cell-tracking method for time-lapse multicolor fluorescent images, Shigeto Seno,Tomohiro Mashita,Yoichi Takenaka,Masaru Ishii,Hideo Matsuda, 2012/09
  • A Method for Isoform Prediction from RNA-Seq Data by Iterative Mapping, Ohno Tomoshige,Seno Shigeto,Takenaka Yoichi,Matsuda Hideo, IMT, Information and Media Technologies Editorial Board, Vol. 7, No. 2, p. 921-927, 2012
  • An estimation method for inference of gene regulatory net-work using Bayesian network with uniting of partial problems, Yukito Watanabe,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, Series on Advances in Bioinformatics and Computational Biology, Imperial College Press, Vol. 13, 2012
  • A method for isoform prediction from RNA-seq data by iterative mapping, Tomoshige Ohno,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, IPSJ Transactions on Bioinformatics, Vol. 5, p. 27-33, 2012
  • An estimation method for inference of gene regulatory net-work using Bayesian network with uniting of partial problems, Yukito Watanabe,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, BMC GENOMICS, BIOMED CENTRAL LTD, Vol. 13, 2012/01
  • INFERENCE OF S-SYSTEM MODELS OF GENE REGULATORY NETWORKS USING IMMUNE ALGORITHM, Tomoyoshi Nakayama,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, IMPERIAL COLLEGE PRESS, Vol. 9, p. 75-86, 2011/12
  • Reduction in genome size decreased fluctuation in gene expression., Bei-Wen Ying,Shigeto Seno,Tetsuya Yomo, 2011/12
  • 細胞分化クロストークのモデル化と細胞分化クロストーク遺伝子の推定手法, 吉澤陽志,瀬尾茂人,竹中要一,松田秀雄, 情報処理学会論文誌 数理モデル化と応用, Vol. 4, No. 4, p. 59-68, 2011/11
  • Perfect Hamming code with a hash table for faster genome mapping, Yoichi Takenaka,Shigeto Seno,Hideo Matsuda, BMC GENOMICS, BIOMED CENTRAL LTD, Vol. 12, 2011/11
  • Size evolution with a laboratory Escherichia coli strain., Mari Yoshida,Nao Hiramoto,Shigeto Seno,Saburo Tsuru,Bei-Wen Ying,Tetsuya Yomo, 2011/10
  • A method for using REST service in bioinformatics workflow by converting to SOAP service, Seigo Ikeda,Yoshiyuki kido,Shigeto Senoo,Yoichi Takenaka,Hideo Matsuda, IPSJ SIG Technical Reports (2011-BIO-25), Vol. 2011, No. 9, p. 1-7, 2011/06
  • Exploration of Potential Genomic Portraits Associated with Intrahepatic Recurrence in Human Hepatocellular Carcinoma, Nobuyoshi Kittaka,Ichiro Takemasa,Shigeto Seno,Yutaka Takeda,Shogo Kobayashi,Shigeru Marubashi,Keizo Dono,Koji Umeshita,Hiroaki Nagano,Hideo Matsuda,Morito Monden,Masaki Mori,Yuichiro Doki, ANNALS OF SURGICAL ONCOLOGY, SPRINGER, Vol. 17, No. 12, p. 3145-3154, 2010/12
  • A Proposal for a Method to Support Bioinformatics Workflow Composition using Metadata, Takanori Fukumoto,Yoshiyuki Kido,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, Proceedings of Kansai Branch Annual Meeting, Information Processing Society of Japan, Kansai Branch, Vol. 2010, 2010/09
  • A Metadata Management System for Composing Bioinformatics Workflows, Takuya Ishibashi,Yoshiyuki Kido,Takanori Fukumoto,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, 9th International Conference on Bioinformatics (InCoB2010), 2010/09
  • Gene Expression Profile Prospectively Predicts Peritoneal Relapse After Curative Surgery of Gastric Cancer, Atsushi Takeno,Ichiro Takemasa,Shigeto Seno,Makoto Yamasaki,Masaaki Motoori,Hiroshi Miyata,Kiyokazu Nakajima,Shuji Takiguchi,Yoshiyuki Fujiwara,Toshiro Nishida,Toshitsugu Okayama,Kenichi Matsubara,Yoichi Takenaka,Hideo Matsuda,Morito Monden,Masaki Mori,Yuichiro Doki, ANNALS OF SURGICAL ONCOLOGY, SPRINGER, Vol. 17, No. 4, p. 1033-1042, 2010/04
  • 立体構造情報と機能情報によるタンパク質間相互作用予測法の改良, 吉川達也,瀬尾茂人,竹中要一,松田秀雄, 情報処理学会研究報告, Vol. 2010, No. 1, p. 1-8, 2010/03
  • Improved Prediction Method for Protein Interactions Using Both Structural and Functional Characteristics of Proteins, Yoshikawa Tatsuya,Seno Shigeto,Takenaka Yoichi,Matsuda Hideo, Information and Media Technologies, Information and Media Technologies Editorial Board, Vol. 5, No. 2, p. 489-502, 2010
  • Improved prediction method for protein interactions using both structural and functional characteristics of proteins, Tatsuya Yoshikawa,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, IPSJ Transactions on Bioinformatics, Vol. 3, No. 2, p. 10-23, 2010
  • A METHOD FOR EFFICIENT EXECUTION OF BIOINFORMATICS WORKFLOWS, JUNYA SEO,YOSHIYUKI KIDO,SHIGETO SENO,YOICHI TAKENAKA,HIDEO MATSUDA, Genome Informatics 2009, PUBLISHED BY IMPERIAL COLLEGE PRESS AND DISTRIBUTED BY WORLD SCIENTIFIC PUBLISHING CO., Vol. 23, p. 139-148, 2009/10
  • A proposal of repository federation method for integration of Web service information, Takefumi Nonaka,Junya Seo,Yoshiyuki Kido,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, IPSJ SIG Technical Reports (2009-BIO-16-1), Vol. 2009, No. 25, p. 1-4, 2009/03
  • Architecture of an Efficient Data Transfer System and Manager for Genome-wide Analysis Workflows, Junya Seo,Yoshiyuki Kido,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, The 3rd MEI International Symposium 2008, 2008/12
  • A Method for Reducing Bounds of Compound Search by Dividing Structure Key, Takashi Shimizu,Yoshiyuki Kido,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, The Proceedings of the 2008 Annual Conference of the Japanese Society for Bioinformatics, 2008/12
  • A Method for Making a New Reference Set of PDB Entries for Retrieving Protein 3D Structures with Structural Annotations, Masahiko Hamada,Yoshiyuki Kido,Shigeto Seno,Hiromi Daiyasu,Yoichi Takenaka,Hideo Matsuda, The Proceedings of the 2008 Annual Conference of the Japanese Society for Bioinformatics, 2008/12
  • Inference of gene regulatory network for adipocyte/osteoblast differentiation, Hideo Matsuda,Yoichi Takenaka,Yosuke Mizuno,Shigeto Seno,Yoshimi Tokuzawa,Yutaka Nakachi,Hidemasa Bono,Yasushi Okazaki, 2008/12
  • A method for refinement of the calculation range by divided structure key of the compound search using Tanimoto coefficient, Takashi Shimizu,Yoshiyuki Kido,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, IPSJ SIG Technical Reports (2008-BIO-14), Information Processing Society of Japan (IPSJ), Vol. 2008, No. 86, p. 5-8, 2008/09
  • A Distributed-Processing System for Accelerating Biological Research using Data-Staging, Yoshiyuki Kido,Shigeto Seno,Susumu Date,Yoichi Takenaka,Hideo Matsuda, IPSJ Transactions on Bioinformatics, Vol. 49, No. 5, p. 58-64, 2008/03
  • A Combination Method of the Tanimoto Coefficient and Proximity Measure of Random Forest for Compound Activity Prediction, Gen Kawamura,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, IPSJ Transactions on Bioinformatics, Vol. 49, No. 5, p. 46-57, 2008/03
  • A Distributed-Processing System for Accelerating Biological Research Using Data-Staging, Kido Yoshiyuki,Seno Shigeto,Date Susumu,Takenaka Yoichi,Matsuda Hideo, ipsjdc, Information Processing Society of Japan, Vol. 4, p. 250-256, 2008
  • A Combination Method of the Tanimoto Coefficient and Proximity Measure of Random Forest for Compound Activity Prediction, Kawamura Gen,Seno Shigeto,Takenaka Yoichi,Matsuda Hideo, ipsjdc, Information Processing Society of Japan, Vol. 4, p. 238-249, 2008
  • A Method for Retrieving Functionally Similar Bioinformatics Workflows, Junya Seo,Shigeto Seno,Yoichi Takenaka, Proceedings of 2007 Annual Conference of Japanese Society for Bioinformatics, 2007/12
  • A Method for the Efficient Data Transmission in Bioinformatics Workflows, Junya Seo,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, 2007/09
  • Retrieving Functionally Similar Bioinformatics Workflows using TF-IDF Filtering., Junya Seo,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, IPSJ Transactions on Bioinformatics, Vol. 2007, No. 128, p. 259-266, 2007/03
  • Retrieving Functionally Similar Bioinformatics Workflows Using TF-IDF Filtering, Seo Junya,Seno Shigeto,Takenaka Yoichi,Matsuda Hideo, ipsjdc, Information Processing Society of Japan, Vol. 3, p. 164-173, 2007
  • A method for similarity search of genomic positional expression using CAGE, Shigeto Seno,Yoichi Takenaka,Chikatoshi Kai,Jun Kawai,Piero Carninci,Yoshihide Hayashizaki,Hideo Matsuda, PLOS GENETICS, PUBLIC LIBRARY SCIENCE, Vol. 2, No. 4, p. 578-586, 2006/04
  • The transcriptional landscape of the mammalian genome, P Carninci,T Kasukawa,S Katayama,J Gough,MC Frith,N Maeda,R Oyama,T Ravasi,B Lenhard,C Wells,R Kodzius,K Shimokawa,VB Bajic,SE Brenner,S Batalov,ARR Forrest,M Zavolan,MJ Davis,LG Wilming,Aidinis, V,JE Allen,Ambesi-Impiombato, X,R Apweiler,RN Aturaliya,TL Bailey,M Bansal,L Baxter,KW Beisel,T Bersano,H Bono,AM Chalk,KP Chiu,Choudhary, V,A Christoffels,DR Clutterbuck,ML Crowe,E Dalla,BP Dalrymple,B de Bono,G Della Gatta,D di Bernardo,T Down,P Engstrom,M Fagiolini,G Faulkner,CF Fletcher,T Fukushima,M Furuno,S Futaki,M Gariboldi,P Georgii-Hemming,TR Gingeras,T Gojobori,RE Green,S Gustincich,M Harbers,Y Hayashi,TK Hensch,N Hirokawa,D Hill,L Huminiecki,M Iacono,K Ikeo,A Iwama,T Ishikawa,M Jakt,A Kanapin,M Katoh,Y Kawasawa,J Kelso,H Kitamura,H Kitano,G Kollias,SPT Krishnan,A Kruger,SK Kummerfeld,Kurochkin, IV,LF Lareau,D Lazarevic,L Lipovich,J Liu,S Liuni,S McWilliam,MM Babu,M Madera,L Marchionni,H Matsuda,S Matsuzawa,H Miki,F Mignone,S Miyake,K Morris,S Mottagui-Tabar,N Mulder,N Nakano,H Nakauchi,P Ng,R Nilsson,S Nishiguchi,S Nishikawa,F Nori,O Ohara,Y Okazaki,Orlando, V,KC Pang,WJ Pavan,G Pavesi,G Pesole,N Petrovsky,S Piazza,J Reed,JF Reid,BZ Ring,M Ringwald,B Rost,Y Ruan,SL Salzberg,A Sandelin,C Schneider,C Schonbach,K Sekiguchi,CAM Semple,S Seno,L Sessa,Y Sheng,Y Shibata,H Shimada,K Shimada,D Silva,B Sinclair,S Sperling,E Stupka,K Sugiura,R Sultana,Y Takenaka,K Taki,K Tammoja,SL Tan,S Tang,MS Taylor,J Tegner,SA Teichmann,HR Ueda,E van Nimwegen,R Verardo,CL Wei,K Yagi,H Yamanishi,E Zabarovsky,S Zhu,A Zimmer,W Hide,C Bult,SM Grimmond,RD Teasdale,ET Liu,Brusic, V,J Quackenbush,C Wahlestedt,JS Mattick,DA Hume,C Kai,D Sasaki,Y Tomaru,S Fukuda,M Kanamori-Katayama,M Suzuki,J Aoki,T Arakawa,J Iida,K Imamura,M Itoh,T Kato,H Kawaji,N Kawagashira,T Kawashima,M Kojima,S Kondo,H Konno,K Nakano,N Ninomiya,T Nishio,M Okada,C Plessy,K Shibata,T Shiraki,S Suzuki,M Tagami,K Waki,A Watahiki,Y Okamura-Oho,H Suzuki,J Kawai,Y Hayashizaki, SCIENCE, AMER ASSOC ADVANCEMENT SCIENCE, Vol. 309, No. 5740, p. 1559-1563, 2005/09
  • A method for clustering gene expression data based on graph structure., Seno S,Teramoto R,Takenaka Y,Matsuda H, Genome informatics. International Conference on Genome Informatics, 2, Vol. 15, No. 2, p. 151-160, 2004
  • P-quasi complete linkage analysis for gene-expression data, S. Seno,R. Teramoto,H. Matsuda, Proceedings - IEEE Computer Society Bioinformatics Conference, CSB 2002, Institute of Electrical and Electronics Engineers Inc., 2002

Misc.

  • レポーター前駆脂肪細胞株を用いた新規UCP1発現調節遺伝子の探索, 川原崎 聡子,瀬尾 茂人,鄭 惠芬,高橋 春弥,野村 亘,神戸 大朋,松田 秀雄,井上 和生,河田 照雄,後藤 剛, 肥満研究, (一社)日本肥満学会, Vol. 27, No. Suppl., p. 338-338, 2022/03
  • Activity and substrate preference of the human nuclear exosome complex is modulated via association with specific cofactors, 藤原奈央子,藤田賢一,藤田賢一,瀬尾茂人,増田誠司,増田誠司, 日本農芸化学会大会講演要旨集(Web), Vol. 2022, 2022
  • Pathogenesis of severe COVID-19 by whole blood mRNA/miRNA network analysis, 戸上由貴,松本寿健,松原庸博,蛯原健,石川昌和,杉原文徳,瀬尾茂人,奥崎大介,平田陽彦,小倉裕司, 日本集中治療医学会学術集会(Web), Vol. 49th, 2022
  • The analysis of polyA+RNA targeted for degradation of nuclear exosome, 杉元啓悟,藤原奈央子,瀬尾茂人,増田誠司, 日本農芸化学会大会講演要旨集(Web), Vol. 2021, 2021
  • Glycerol kinase in white adipose tissue governs browning via the regulation of intracellular fatty acid metabolism, 後藤剛,後藤剛,岩瀬麻里,常盤颯志,瀬尾茂人,向井貴子,高橋春弥,野村亘,野村亘,JHENG Huei-Fen,松村成暢,楠堂達也,大里直樹,松田秀雄,井上和生,井上和生,河田照雄,河田照雄, 日本農芸化学会大会講演要旨集(Web), Vol. 2021, 2021
  • PEA法を用いた血漿プロテオミクス解析による重症新型コロナ感染症の分子病態型と患者層別化マーカー開発, 松本寿健,蛯原健,松原庸博,戸上由貴,舘野丈太郎,松浦裕司,松浦裕司,児島嵩,平田陽彦,杉原文徳,瀬尾茂人,奥崎大介,小倉裕司, 日本人類遺伝学会大会プログラム・抄録集, Vol. 66th (CD-ROM), 2021
  • Direct cell-cell contact between mature osteoblasts and osteoclasts dynamically controls their functions in vivo., 古家雅之,古家雅之,古家雅之,菊田順一,瀬尾茂人,前田拓樹,柏井将文,柏井将文,海渡貴司,橋本国彦,橋本国彦,松田秀雄,菊地和也,石井優,吉川秀樹,吉川秀樹, Journal of Spine Research (Web), Vol. 11, No. 3, 2020
  • UAP56とURH49によるスプライシング制御を介した選択的mRNA輸送機構の解明, 藤田賢一,池田宥哉,吉岡英恵,瀬尾茂人,増田誠司, 日本分子生物学会年会プログラム・要旨集(Web), Vol. 42nd, 2019
  • Quantitative data analysis for live imaging of bone, Shigeto Seno, Vol. 28, No. 2, p. 193-200, 2018/01
  • 二光子励起生体イメージングを用いた破骨細胞・骨芽細胞コミュニケーションの解明, 古家雅之,古家雅之,古家雅之,菊田順一,瀬尾茂人,前田拓樹,柏井将文,海渡貴司,菊地和也,松田秀雄,吉川秀樹,石井優, 日本整形外科学会雑誌, Vol. 91, No. 8, 2017
  • Gene Set Enrichment Analysis for Time-Series Gene Expression Profile, Yuta Yuta Okuma,Seno Shigeto,takenaka yoichi,Matsuda Hideo, BME, Japanese Society for Medical and Biological Engineering, Vol. 51, p. R-166-R-166, 2013
  • Direct Acyclic Graph for Sequence Structures from Short Read Clustering with Neighboring Reads, Vol. 2012, No. 27, p. 1-2, 2012/02/23
  • A method for using REST service in bioinformatics workflow by converting to SOAP service, IKEDA SEIGO,KIDO YOSHIYUKI,SENO SHIGETO,TAKENAKA YOICHI,MATSUDA HIDEO, IEICE technical report, The Institute of Electronics, Information and Communication Engineers, Vol. 111, No. 96, p. 51-57, 2011/06/16
  • A Crosstalk Model and an Estimation Method to Find Crosstalk Genes on Cell Differentiation, Vol. 2011, No. 10, p. 1-8, 2011/02/28
  • A method to speedup compound searching by grouped similar compounds using the Tanimoto coefficient, LY NGUYEN CAM,SENO SHIGETO,TAKENAKA YOICHI,MATSUDA HIDEO, Vol. 2010, No. 7, p. 1-8, 2010/02/25
  • A Search Method for Similar Compounds in Very Large Compound Database, KAWAMURA Gen,SENO Shigeto,TAKENAKA Yoichi,MATSUDA Hideo, Vol. 70, p. 233-234, 2008/03/13
  • A Combination Method of the Tanimoto Coefficient and Proximity Measure of Random Forest for Compound Activity Prediction, KAWAMURA GEN,SENO SHIGETO,TAKENAKA YOICHI,MATSUDA HIDEO, IPSJ SIG technical reports, Information Processing Society of Japan (IPSJ), Vol. 2008, No. 15, p. 39-46, 2008/03/04
  • A method for speedup of similarity search for compound based on the property of the Tanimoto coefficient, SHIMIZU Takashi,SENO Shigeto,TAKENAKA Yoichi,MATSUDA Hideo, IPSJ SIG technical reports, Information Processing Society of Japan (IPSJ), Vol. 2008, No. 15, p. 47-54, 2008/03/04
  • Pathway Alignment using Reaction Classification Number, SHINMEN GO,SENO SHIGETO,TAKENAKA YOICHI,MATSUDA HIDEO, IPSJ SIG technical reports, Information Processing Society of Japan (IPSJ), Vol. 2007, No. 21, p. 41-48, 2007/03/05
  • D-7-9 A Method for Extracting the Tissue-Specific Metabolic-Pathways based on CAGE, Sakooka Yousuke,Seno Shigeto,Taki Kohei,Takenaka Yoichi,Matsuda Hideo, Proceedings of the IEICE General Conference, The Institute of Electronics, Information and Communication Engineers, Vol. 2006, No. 1, p. 63-63, 2006/03/08

Publications

  • 医学のあゆみ 生体イメージングの最前線─絶え間ない技術革新と生命医科学の新展開, 瀬尾茂人,長村徹, 医歯薬出版, 2023/07
  • 骨格筋の維持機構を暴き、サルコペニアに挑む!, 上住聡芳, 羊土社, 2020/10

Industrial Property Rights

  • マルチプレックス大腸がんマーカーパネル, 渡辺真,松尾英一,金子直樹,森正樹,西村紀,竹政伊知朗,松田秀雄,瀬尾茂人,松原稔哉, 特許5805518, 特願2011-280149, 出願日:2011/12/21, 登録日:2015/09/11
  • 評価方法、評価装置およびプログラム, 石井優,菊田順一,松田秀雄,瀬尾茂人, 特願2018-7571, 出願日:2018/01/19

Awards

  • Excellent Poster Award, Ayaka Mae,Shigeto Seno,Hironori Shigeta, Yu,Chen Liu,Sangeun Kim,Daisuke Okuzaki,Ryoichi Mori,Hideo Matsuda, Chem-Bio Informatics Society, 2023/10
  • Best Crowd Award, Kazufumi Hosoda, Shigeto Seno, Tsutomu Murata, KICSS2022, 2022/11
  • The Excellent Paper Award Published in Bioscience, Biotechnology, & Biochemistry, Mari Iwase,Shoko Sakai,Shigeto Seno,Yu-Sheng Yeh,Tony Kuo,Haruya Takahashi,Wataru Nomura,Huei-Fen Jheng,Paul Horton,Naoki Osato,Hideo Matsuda,Kazuo Inoue,Teruo Kawada,Tsuyoshi Goto, Japan Society for Bioscience, Biotechnology, and Agrochemistry, 2021/03
  • 大阪大学総長奨励賞(研究部門), 瀬尾 茂人, 大阪大学, 2014/07
  • 情報処理学会論文賞(IPSJ Outstanding Paper Award), Tomoshige Ohno,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, 情報処理学会, 2014/06
  • 2013年度(平成25年度)山下記念研究賞, 瀬尾 茂人, 情報処理学会, 2013/07
  • The 10th Asia Pacific Bioinformatics Conference, Best paper award, 2012/01
  • The 21st International Conference on Genome Informatics, Best poster award, 2010/12
  • 1st IEEE Computer Society Bioinformatics Conference (CSB2002), Best Poster Award, 瀬尾 茂人, 2002/08

Presentations

  • 細胞動画像とオミクスデータの統合的情報解析方法の開発への取り組み, 瀬尾茂人, 第46回 日本基礎老化学会大会, 2023/06/17
  • バイオインフォマティクスツールのエコシステム, 瀬尾茂人, NGS EXPO 2022, 2022/10/19
  • 細胞動画像とオミクスデータの統合による細胞コミュニティの解析手法の開発, 瀬尾茂人, 学術変革(B)「セルコミュニティ」キックオフミーティング, 2022/10/04
  • 1細胞発現解析と細胞画像処理,またその共同研究について, 瀬尾茂人, 大阪大学医学系研究科 第3回バイオインフォマティクスセミナー, 2022/01/12
  • 生命科学データの情報処理について, 瀬尾茂人, 化学工学会 第52回秋季大会, 2021/09/22
  • シングルセル発現解析ツールの動向について, 瀬尾茂人, Single-Cell 2021 OSAKA Onlineセミナー シングルセルの免疫学への応用, 2021/09/15
  • IT系から見たシングルセル遺伝子発現解析, 瀬尾茂人, 2018/05
  • バイオインフォマティクスのデータマイニング, 瀬尾茂人, 奈良先端科学技術大学院大学DSCトーク, 2018/03
  • バイオイメージインフォマティクスと共同研究について, 瀬尾茂人, 日本生物工学会・バイオインフォマティクス相談部会第一回講演会, 2017/12
  • バイオサイエンスのための生体医用画像, 瀬尾茂人, 生体医用画像研究会第3回若手の会, 2016/03
  • イメージングデータの定量化とトランスオミクス解析, 瀬尾茂人, 2015/09
  • 脂肪細胞におけるSTAT3を介したUCP1発現制御機構の解明, 疋田菜光,岩瀬麻里,川原崎聡子,酒井章子,坂本智弥,大里直樹,瀬尾茂人,野村亘,野村亘,高橋春弥,松田秀雄,井上和生,井上和生,河田照雄,河田照雄,後藤剛,後藤剛, 日本栄養・食糧学会近畿支部大会および公開シンポジウム講演抄録集, 2020
  • 一細胞遺伝子発現解析のためのJoint-NMFを用いたクラスタリング手法, 志賀幹夫,瀬尾茂人,鬼塚真,松田秀雄, 第42回日本分子生物学会年会, 2019/12
  • 脂肪組織におけるglycerol kinaseのUcp1発現制御機構, 岩瀬 麻里,常盤 颯志,瀬尾 茂人,向井 貴子,高橋 春弥,野村 亘,Jheng Huei-Fen,楠堂 達也,大里 直樹,松田 秀雄,井上 和生,河田 照雄,後藤 剛, 肥満研究, 2019/10
  • Single-cell transcriptome analysis of mouse leukocytes in inflammatory stimulation, Naoki Osato,Hironori Shigeta,Shigeto Seno,Yutaka Uchida,Junichi Kikuta,Masaru Ishii,Hideo Matsuda, IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2019), 2019/10
  • Data Augmentation for Immune Cell Tracking using Random Walk Models and Generative Adversarial Networks, Kenji Fujimoto,Shigeto Seno,Hironori Shigeta,Tomohiro Mashita,Yutaka Uchida,Masaru Ishii,Hideo Matsuda, Bioimage Informatics 2019, 2019/10
  • 細胞画像の領域分割のための敵対的生成ネットワークを用いた訓練データ生成手法, 藤本健二,瀬尾茂人,渡邊誓旅,繁田浩功,間下以大,松田秀雄, 第22回 画像の認識・理解シンポジウム (MIRU2019), 2019/08
  • A method for inferring gene regulatory networks based on pseudo time-series gene expression profiles from single-cell RNA-seq data, Kaito Uemura,Naoki Osato,Hironori Shigeta,Shigeto Seno,Hideo Matsuda, 27th Conference on Intelligent Systems for Molecular Biology and 18th European Conference on Computational Biology (ISMB/ECCB), 2019/07
  • A study on novel estimation method of cell differentiation lineage by single cell trajectory inference, Shuhei Yao,Hironori Shigeta,Shigeto Seno,Hideo Matsuda, 27th Conference on Intelligent Systems for Molecular Biology and 18th European Conference on Computational Biology (ISMB/ECCB), 2019/07
  • Single-cell RNA-seq analysis combined with live cell imaging on inflammatory response, Hideo Matsuda,Naoki Osato,Yutaka Uchida,Hironori Shigeta,Shigeto Seno,Masaru Ishii, 27th Conference on Intelligent Systems for Molecular Biology and 18th European Conference on Computational Biology (ISMB/ECCB), 2019/07
  • 蛍光顕微鏡画像のための情報処理技術~グラフカットによる毛細血管の抽出, 瀬尾茂人,池田わたる,繁田浩功,松田秀雄, 第2回蛍光ガイド手術研究会, 2019/05
  • 白色脂肪組織の褐色化に対するglycerol kinaseの役割, 岩瀬麻里,常盤颯志,瀬尾茂人,向井貴子,高橋春弥,野村亘,野村亘,JHENG Huei‐Fen,荒武,楠堂達也,大里直樹,松田秀雄,河田照雄,河田照雄,後藤剛,後藤剛, 日本栄養・食糧学会大会講演要旨集, 2019/04/22
  • Data augmentation using image analogies for adipocyte image segmentation, Hideki Akazawa,Seiryo Watanabe,Hironori Shigeta,Tomohiro Mashita,Tsuyoshi Goto,Teruo Kawada,Shigeto Seno,Hideo Matsuda, ISBI19 (IEEE International Symposium on Biomedical Imaging), 2019/04
  • DNN models and postprocessing thresholds for endoscopy artifact detection in practice”; Challenge on Endoscopy Artefacts Detection, Seiryo Watanabe,Shigeto Seno,Hideo Matsuda, 2019/04
  • Cell Tracking and Quantitative Analysis for Microscopy Imaging Data, Shigeto Seno, UCSD-OU Workshop on Information Science for Future Society, 2019/03
  • 生体蛍光観察動画像の深度を考慮した深層学習による細胞追跡精度の改善, 嶋田彩人,瀬尾茂人,繁田浩功,間下以大,内田穣,石井優,松田秀雄, 第122回数理モデル化と問題解決研究発表会, 2019/03
  • バイオインフォマティクスと機械学習, 瀬尾茂人, 阪大AI Meet UP, 2019/02
  • Asymmetric Integration of Single-Cell Transcriptomic Data using Latent Dirichlet Allocation and Procrustes Analysis, Mitsuhiro Eto,Wataru Hirota,Shigeto Seno,Hideo Matsuda, IDASB2018 (The 9th Integrative Data Analysis in Systems Biology), 2018/12/03
  • Deep Learning Technique for Skeletal Muscle Image Analysis, Shigeto Seno, 2018/11
  • Detection of Fusion Genes from Human Breast Cancer Cell-line RNA-Seq Data Using Shifted Short Read Clustering, Yoshiaki Sota,Shigeto Seno,Hironori Shigeta,Naoki Osato,Masafumi Shimoda,Shinzaburo Noguchi,Hideo Matsuda, 2018/10
  • IL‐1βが白色脂肪組織におけるUCP1発現誘導に及ぼす影響の検討, 新谷真和,吉竹里依子,岩瀬麻里,高橋春弥,野村亘,JHENG Huie‐Fun,荒武,大里直樹,瀬尾茂人,松田秀雄,河田照雄,河田照雄,後藤剛,後藤剛, 肥満研究, 2018/09/25
  • 細胞画像のセグメンテーション精度向上のための画像類推を用いた学習データ拡張, 赤沢 秀樹,渡邊 誓旅,繁田 浩功,間下 以大,瀬尾 茂人,松田 秀雄, 2018/08
  • 生体イメージングによる破骨細胞の骨吸収動態の画像解析, 柳澤篤,菊田順一,瀬尾茂人,繁田浩功,菊地和也,松田秀雄,石井優, 第36回日本骨代謝学会学術集会, 2018/07
  • FGF21はPPARαアゴニスト摂取時の代謝異常改善に重要である, 岩瀬麻里,平田茉莉子,高橋春弥,JHENG Huei‐Fen,野村亘,荒武,高橋信之,高橋信之,瀬尾茂人,松田秀雄,阿部恵,海老原健,伊藤信行,河田照雄,河田照雄,後藤剛,後藤剛, 日本栄養・食糧学会大会講演要旨集, 2018/04/27
  • Ucp1発現を制御するnon‐coding RNAの探索と機能解析, 岩瀬麻里,酒井章子,瀬尾茂人,TONY Kuo,高橋春弥,野村亘,野村亘,JHENG Huie‐Fun,荒武,PAUL Horton,大里直樹,松田秀雄,河田照雄,河田照雄,後藤剛,後藤剛, 日本農芸化学会大会講演要旨集(Web), 2018/03/05
  • DPP‐4阻害剤テネリグリプチンが脂肪組織のUCP‐1発現に与える影響, 澤崎穂菜美,武田健一郎,高橋春弥,野村亘,野村亘,JHENG Huei‐fen,荒武,高橋信之,高橋信之,大里直樹,瀬尾茂人,松田秀雄,河田照雄,後藤剛, 日本農芸化学会大会講演要旨集(Web), 2018/03/05
  • Pachinko Allocation Modelを用いたクラスタリングによるシングルセル発現解析手法, 広田航,江藤充宏,瀬尾茂人,松田秀雄, 第117回数理モデル化と問題解決研究発表会, 2018/03
  • 褐色脂肪細胞機能におけるglycerol kinaseの役割, 岩瀬麻里,常盤颯志,高橋春弥,野村亘,野村亘,JHENG Huei-Fun,荒武,大里直樹,瀬尾茂人,松田秀雄,河田照雄,河田照雄,後藤剛,後藤剛, 日本食品科学工学会関西支部大会市民フォーラム講演要旨集, 2018
  • Automated Transition Analysis of Activated Gene Regulation during Diauxic Nutrient Shift in Escherichia Coli and Adipocyte Differentiation in Mouse Cells, Yoichi Takenaka,Kazuma Mikami,Shigeto Seno,Hideo Matsuda, 2018/01
  • Functional analysis of metagenome using composition-based method, Meya Cho,Shigeto Seno,Hideo Matsuda,Yoichi Takenaka, APBC 2018 (The Sixteenth Asia Pacific Bioinformatics Conference), Yokohama, Japan, 2018/01
  • Missing value imputation for gene expression data with Deep Learning, Kazumasa Saito,Shigeto Seno,Hideo Matsuda,Yoichi Takenaka, APBC 2018 (The Sixteenth Asia Pacific Bioinformatics Conference), Yokohama, Japan, 2018/01
  • 発現制御に関するmiRNAの探索及び機能解析, 酒井章子,大久保麻里,高橋春弥,野村亘,野村亘,JHENG Huie‐Fen,荒武,瀬尾茂人,大里直樹,松田秀雄,河田照雄,河田照雄,後藤剛,後藤剛, 日本栄養・食糧学会近畿支部大会および公開シンポジウム講演抄録集, 2017/11/01
  • Chromatin 3D reconstruction from chromosomal contacts using a genetic algorithm, Viacheslav Kapilevich,Shigeto Seno,Hideo Matsuda and Yoichi Takenaka, 2017/11
  • 脂肪細胞特異的PPARα高発現マウスの糖代謝異常改善とメタボローム解析, 高橋春弥,眞田康平,永井宏幸,青木ゆめこ,伊藤哲朗,瀬尾茂人,松田秀雄,河田照雄,河田照雄,後藤剛,後藤剛, 肥満研究, 2017/09/22
  • Bone Marrow Cavity Segmentation using Graph-cuts with Wavelet-Based Texture Feature, Hironori Shigeta,Tomohiro Mashita,Junichi Kikuta,Shigeto Seno,Haruo Takemura,Masaru Ishii,and Hideo Matsuda, 2017/09
  • ディープラーニングを用いた脂肪組織画像における細胞の計数, 瀬尾茂人,渡邊誓旅,後藤剛,竹中要一,河田照雄,松田秀雄, 第22回アディポサイエンス・シンポジウム, 2017/08
  • 蛍光顕微鏡画像のためのグラフカットによる毛細血管の抽出手法, 嶋田彩人,繁田浩功,瀬尾茂人,池田わたる,竹中要一,松田秀雄, MIRU2017, 2017/08
  • Analyzing cell migration dynamics from intravital imaging by deformable image matching, Hideo Matsuda,Hironori Shigeta,Shigeto Seno,Junichi Kikuta,Masaru Ishii, The 25th conference on Intelligent Systems for Molecular Biology and the 16th European Conference on Computation Biology (ISMB/ECCB 2017), 2017/07
  • Clustering of cells for single cell analysis using Latent Dirichlet Allocation, Mitsuhiro Eto,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, 2017/07
  • A method of bioimage analysis for spatial pattern of cellular interaction and intercalation, Shigeto Seno,Masayuki Furuya,Junichi Kikuta,Masaru Ishii,Hideo Matsuda, 2017/07
  • 1細胞RNA-seqの特性を考慮した遺伝子発現差解析手法の検討, 大里直樹,繁田浩功,瀬尾茂人,松田秀雄, NGS現場の会第5回研究会, 2017/05
  • 一細胞解析のための潜在的ディリクレ配分法を用いた遺伝子群の機能予測手法, 江藤充宏,瀬尾茂人,竹中要一,松田秀雄, 2017/05
  • 畳み込みニューラルネットワークを用いた脂肪細胞セグメンテーションにおける分割精度改善手法の提案, 薮崎隼人,瀬尾茂人,竹中要一,後藤剛,河田照雄,松田秀雄, 第112回数理モデル化と問題解決研究発表会, 2017/03
  • 細胞個体の移動傾向の違いを考慮したグローバルデータアソシエーションを用いた細胞追跡手法, 伊藤澄美,瀬尾茂人,繁田浩功,菊田順一,竹中要一,石井優,松田秀雄, 第112回数理モデル化と問題解決研究発表会, 2017/03
  • 生体イメージング技術を駆使したトロンボモジュリンの新たな作用機序解明, 西澤志乃,菊田順一,瀬尾茂人,松田秀雄,石井優, BMB2015, 2016/12
  • 粒子フィルタを用いた細胞核の追跡, 瀬尾茂人,間下以大,繁田浩功,菊田順一,竹中要一,石井優,松田秀雄, 外観検査アルゴリズムコンテスト2016, 2016/12
  • A Bone Marrow Cavity Segmentation Method Using Wavelet-Based Texture Feature, Hironori Shigeta,Tomohiro Mashita,Junichi Kikuta,Shigeto Seno,Haruo Takemura,Hideo Matsuda,Masaru Ishii, the 23rd International Conference on Pattern Recognition, 2016/12
  • Comparative Analysis of Transformation Methods for Gene Expression Profiles in Breast Cancer Datasets, Yoshiaki Sota,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda,Shinzaburo Noguchi, 2016/10
  • 脂肪細胞特異的PPARα高発現が食餌誘導性の糖代謝異常に与える影響, 眞田康平,高橋春弥,永井宏幸,瀬尾茂人,松田秀雄,河田照雄,後藤剛,河田照雄,後藤剛, 肥満研究, 2016/09/20
  • 模様特徴量とグラフカットを利用した生体骨組織の骨髄腔の領域分割, 繁田浩功,間下以大,菊田順一,瀬尾茂人,石井優,松田秀雄, 第5回生命医薬情報学連合大会 (IIBMP-2016), 2016/09
  • A Method for Reducing False Positives of Target Genes of MicroRNAs by Combining Two Prediction Tools, Hideo Matsuda,Junko Tsuda,Shigeto Seno,Yoichi Takenaka, International Conference on Intelligent Systems for Molecular Biology, 2016/07
  • An Accurate Estimation Method for Expression Profiles of Novel Transcripts from RNA-Seq Data, Fuki Iwasaki,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, International Conference on Intelligent Systems for Molecular Biology, 2016/07
  • 画像処理とディープラーニングの手法を用いた病理診断支援, 渡邊誓旅,瀬尾茂人,竹中要一,松田 秀雄, 2016/06
  • オプティカルフローとウェーブレット解析を用いた白血球の動態の解析手法, 松原周平,瀬尾茂人,西澤 志乃,菊田 順一,竹中 要一,石井 優,松田 秀雄, 2016/06
  • Bayesian network inference from gene expression profiles with a small number of samples, Kazumasa Saito,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, International Conference on Research in Computational Molecular Biology (RECOMB 2016), 2016/04
  • Dynamic analysis of gene regulations using leaving-one-out expression profile, Yoichi Takenaka,Shigeto Seno,Hideo Matsuda, International Conference on Research in Computational Molecular Biology (RECOMB 2016), 2016/04
  • 乳癌データベースを用いた遺伝子発現プロファイルの数値変換の検討, 草田義昭,瀬尾茂人,竹中要一,野口眞三郎,松田秀雄, 第45回バイオ情報学研究発表会, 2016/03
  • 小サンプル数データに対するベイジアンネットワークのスコアベース構造学習改善手法, 齋藤和正,瀬尾茂人,竹中要一,松田秀雄, 2016/03
  • Deep learningを用いた脂肪組織画像における細胞の認識, 水野雄太,瀬尾茂人,渡邊誓旅,竹中要一,平松拓郎,後藤剛,河田照雄,松田秀雄, 2016/03
  • コンポーネントツリーとデータアソシエーションを用いた細胞追跡手法, 藏重昂平,瀬尾茂人,竹中要一,松田秀雄, 2016/03
  • オプティカルフローを用いた3次元生体イメージングデータからの細胞動態の解析, 藤代昂希,瀬尾茂人,竹中要一,古家雅之,菊田順一,石井優,松田秀雄, 2016/03
  • Intravital imaging of coupling between osteoblasts and osteoclasts by using multiphoton Microscopy, Masayuki Furuya,Junichi Kikuta,Hiroki Mizuno,Shigeto Seno,Hiroki Maeda,Kazuya Kikuchi,Hideo Matsuda,Hideki Yoshikawa,Masaru Ishii, American Society for Bone and Mineral Research: ASBMR, 2015/09
  • Detecting the shifts of gene regulatory networks during time-course experiments with a single time point temporal resolution, Yoichi Takenaka,Shigeto Seno,Hideo Matsuda, GIW/InCOB2015, 2015/09
  • 共通k-mer種別数に基づくメタゲノム分類手法, 吉田拓真,瀬尾茂人,竹中要一,松田秀雄, 第4回NGS現場の会, 2015/07
  • A method for predicting compound-protein interactions using canonical correlational analysis, Takuya Hashimoto,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, International Conference on Intelligent Systems for Molecular Biology (ISMB2010), 2015/07
  • 抗がん剤の薬効評価のための経時観察蛍光画像からのデータマイニング, 瀬尾茂人,間下以大,竹中要一,石井優,松田秀雄, バイオイメージインフォマティクス・ワークショップ2015, 2015/06
  • ダイナミックベイジアンネットワークを用いた遺伝子制御ネットワーク推定の部分問題化による近似解法, 上木怜,瀬尾茂人,竹中要一,松田秀雄, 第 42 回バイオ情報学(BIO)研究会, 2015/06
  • オプティカルフローを用いた血管中を遊走する白血球の動態の解析手法, 松原周平,瀬尾茂人,菊田順一,竹中要一,石井優,松田秀雄, 2015/06
  • コンポーネントツリーを用いたグローバルデータアソシエーションによる細胞追跡手法, 藏重昂平,瀬尾茂人,間下以大,菊田順一,竹中要一,石井優,松田秀雄, 2015/06
  • A rendering method based on local maximum intensity projection for in vivo cellular imaging, Ryo Taguchi,Shigeto Seno,Junichi Kikuta,Yoichi Takenaka,Masaru Ishii,Hideo Matsuda, Proceedings of Medical and Biological Imaging - JSMBE, 2015/03
  • イベントヒストリー分析を用いたバイオイメージングデータの解析手法, 瀬尾茂人,菊田順一,竹中要一,石井優,松田秀雄, 第37回日本分子生物学会年会, 2014/11
  • Improvement approach of cell tracking accuracy by using inter-frame information, Kohei Kurashige,Shigeto Seno,Tomohiro Mashita,Junichi Kikuta,Yoichi Takenaka,Masaru Ishii,Hideo Matsuda, 2014/10
  • An automatic event detection method using semi-supervised learning for time-lapse imaging data, Kojiro Fukuda,Shigeto Seno,Tomohiro Mashita,Yoichi Takenaka,Masaru Ishii,Hideo Matsuda, 2014/10
  • リードの由来階級の既知・未知予測に基づくメタゲノム配列の系統分類手法, 吉田 拓真,瀬尾茂人,竹中要一,松田秀雄, 情報処理学会研究報告, 2014/09
  • 大域データ対応付けの反復実行による細胞追跡精度の改善手法, 藏重 昂平,福田浩二郎,瀬尾茂人,間下以大,竹中要一,松田秀雄, 情報処理学会研究報告, 2014/09
  • A Segmentation Method for Bone Marrow Cavity Image Using Graph-Cuts, Tomohiro Mashita,Jun Usami,Hironori Shigeta,Yoshihiro Kuroda,Junichi Kikuta,Shigeto Seno,Masaru Ishii,Hideo Matsuda and Haruo Takemura, 1st Workshop on Pattern Recognition Techniques for Indirect Immunofluorescence Images Analysis, 2014/08
  • A Graph Cuts Image Segmentation Method for Quantifying Barrier Permeation in Bone Tissue, Hironori Shigeta,Tomohiro Mashita,Takeshi Kaneko,Junichi Kikuta,Shigeto Seno,Haruo Takemura,Hideo Matsuda and Masaru Ishii, 2014/08
  • Chronological analysis of regulatory strength on gene regulatory networks, Yoichi Takenaka,Shigeto Seno,Hideo Matsuda, ECCB 2014, 2014/07
  • ベイジアンネットワークによる遺伝子制御ネットワーク推定結果の反復構築のための計算速度向上手法 (情報論的学習理論と機械学習), 津田 絢子,瀬尾 茂人,竹中 要一,松田 秀雄, 電子情報通信学会技術研究報告 = IEICE technical report : 信学技報, 2014/06/25
  • ベイジアンネットワークによる遺伝子制御ネットワーク推定結果の反復構築のための計算速度向上手法, 津田絢子,瀬尾茂人,竹中要一,松田秀雄, 情報処理学会研究報告. MPS, 数理モデル化と問題解決研究報告, 2014/06/18
  • タイムラプスイメージングによる細胞周期観測画像の時空間解析, 福田浩二郎,瀬尾茂人,間下以大,竹中要一,松田秀雄, 2014/06
  • マルチチャンネル蛍光顕微鏡動画のためのパーティクルフィルタを用いた細胞追跡手法, 小森康祐,瀬尾茂人,間下以大,竹中要一,松田秀雄, 第76回情報処理学会全国大会, 2014/03
  • A Bone-Marrow Space Segmentation Method using Graph-Cuts, Jun Usami,Hironori Shigeta,Tomohiro Mashita,Yoshihiro Kuroda,Junichi Kikuta,Shigeto Senoo,Masaru Ishii,Hideo Matsuda,Haruo Takemura, IPSJ SIG Notes, 2014/02/24
  • Segmentation and Tracking Method of Cell Nuclei for Time-lapse Fluorescent Microscopy Images Based on Gaussian Mixture Model, 2013/12/27
  • A Robust Method for Estimating Gene Regulatory Networks Using Multiple Time Series Gene Expression Profiles, 2013/12/27
  • 時系列発現プロファイルを用いた時期特異的に機能するPPIサブネットワークの探索手法, 荒木 嶺,瀬尾 茂人,竹中 要一,松田 秀雄, 第36回日本分子生物学会年回, 2013/12
  • 細胞のタイムラプスイメージングデータからの情報処理とデータマイニング, 瀬尾茂人, 定量生物学の会第六回年会, 2013/11
  • Integrative prediction of miRNA-mRNA interactions from high-throughput sequencing data, Tomoshige Ohno,Hiromi Daiyasu,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, RECOMB/ISCB Conference on Regulatory and Systems Genomics; with DREAM Challenges 2013, 2013/11
  • Estimating Intravital Concentration Gradient of Chemoattractant Based on Mathematical Models of Osteoclast Precursor Chemotaxis, Shigeto Seno, 2013/11
  • 長いリードを計算機で扱うのに完全線形符号が効果的だと思うのです。, 竹中要一,瀬尾茂人,松田秀雄, NGS現場の会第三回研究会, 2013/09
  • 多次元尺度構成法によるリード分類結果の視覚化, 吉田拓真,瀬尾茂人,竹中要一,松田秀雄, NGS現場の会第三回研究会, 2013/09
  • RNA-seq データを用いたDifferential Alternative Splicing の検出ツールの比較考察, 川田愛明,大野朋重,瀬尾茂人,竹中要一,松田秀雄, NGS現場の会第三回研究会, 2013/09
  • 経時観測蛍光画像からのモーションヒストリーイメージを用いた細胞分裂の検出方法, 福田浩二郎,瀬尾茂人,間下以大,前田栄,竹中要一,石井優,松田秀雄, 第16回画像の認識・理解シンポジウムMIRU2013, 2013/08
  • Global Data Associationによる経時観察画像における破骨前駆細胞の自動追跡手法, 尾野貴広,瀬尾茂人,間下以大,竹中要一,石井優,松田秀雄, 第16回画像の認識・理解シンポジウムMIRU2013, 2013/07
  • Gene Set Enrichment Analysis for Time-Series Gene Expression Profile, Yuta Okuma,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, 2013 IEEE EMBC, 2013/07
  • Multiplication of Motif Occurrence Profiles for Metagenome Fragment Classification, Naoki Matsushita,Hiromi Daiyasu,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, 2013 IEEE EMBC, 2013/07
  • Reconstruction of Dynamic Gene Regulatory Networks for Cell Differentiation by Separation of Time-course Data, Tomoyoshi Nakayama,Hiromi Daiyasu,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, BIOCOMP'13, 2013/07
  • A Method of Sequence Analysis for High-Throughput Sequencer Data Based on Shifted Short Read Clustering, Kensuke Suzuki,Daisuke Ueta,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, BIOCOMP'13, 2013/07
  • Gene Set Enrichment Analysis for a Long Time Series Gene Expression Profile, Yuta Okuma,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, BIOCOMP'13, 2013/07
  • Evaluation Method Based on Graph Cut For Barrier Permeation in Bone Tissues, Hironori Shigeta,Tomohiro Mashita,Takeshi Kaneko,Junichi Kikuta,Shigeto Senoo,Haruo Takemura,Hideo Matsuda,Masaru Ishii, IPSJ SIG technical reports, 2013/03/14
  • Improvement of the Accuracy of Mapping by Composing Alleles, 奥田華代,竹中要一,大野朋重,瀬尾茂人,松田秀雄, 情報処理学会 第75回全国大会, 2013/03
  • A robust method for estimating gene regulatory networks using multiple time series gene expression profiles, IPSJ SIG Notes, 2013/02/20
  • 混合正規分布モデルを用いた経時観測蛍光画像からの細胞核の検出と追跡手法, 瀬尾茂人,間下以大,前田栄,竹中要一,石井優,松田秀雄, 情報処理学会研究報告. MPS, 数理モデル化と問題解決研究報告, 2013/02/20
  • Measuring Transcript-Type Dependent Expression Levels of ncRNAs in RNA-Seq Analysis, Tomoshige Ohno,Shigeto Seno,Hiromi Daiyasu,Yoichi Takenaka,Hideo Matsuda, 2012/12
  • An automatic cell-tracking method and spatiotemporal analysis for time-lapse multicolor fluorescent images of cell cycle, Shigeto Seno,Sakae Maeda,Yoichi Takenaka,Masaru Ishii,Hideo Matsuda, 2012/12
  • 多色蛍光イメージングによる経時観測データのための細胞追跡手法, 瀬尾茂人,間下以大,前田栄,竹中要一,石井優,松田秀雄, View2012, 2012/12
  • Estimate Dynamic Gene Regulatory Networks in Adipocyte Differentiation for Detecting Changes of Gene Regulations by Splitting Time Course Data, Tomoyoshi Nakayama,Yoshiyuki Kido,Hiromi Daiyasu,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, GIW2012, 2012/12
  • An estimation method for a cellular-state-specific gene regulatory network along tree-structured gene expression profiles, Ryo Araki,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, GIW2012, 2012/12
  • 多色蛍光タイムラプスイメージングによる細胞周期観測データのための細胞自動追跡手法, 瀬尾茂人,間下以大,前田栄,竹中要一,石井優,松田秀雄, バイオイメージ・インフォマティクス ワークショップ2012, 2012/11
  • Transcript-Type Dependent Normalization of Expression Levels in RNA-Seq Data for Non-Coding RNA Analysis, Tomoshige Ohno,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, 2012/10
  • Comparison of Gene Expressions measured by RNA-seq and Microarray for Transcriptome Analysis of Adipose Tissues, Masakazu Sugiyama,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, 2012/10
  • Two-stage method to infer gene regulatory network utilizing Link Prediction, Sho Ohsuga,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, 2012/10
  • Estimation of Dynamic Gene Regulatory Networks for Cell Differentiation by Splitting Time Course Data, Tomoyoshi Nakayama,Yoshiyuki Kido,Hiromi Daiyasu,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, Joint Conference on Informatics is Biology, Medicine and Pharmacology, 2012/10
  • Bayes-based inference of gene regulatory network for multiple time series gene expression profile, Yukito Watanabe,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, 2012/10
  • Automatic cell tracking for time-lapse fluorescent images of cell cycle, Shigeto Seno,Sakae Maeda,Tomohiro Mashita,Yoichi Takenaka,Masaru Ishii,Hideo Matsuda, 2012/10
  • A cell-tracking method for time-lapse multicolor fluorescent images, Shigeto Seno,Tomohiro Mashita,Yoichi Takenaka,Masaru Ishii,Hideo Matsuda, 2012/09
  • Reduced noise in gene expression caused by a replaced foreign promoter, 2012/08
  • Perfect linear code reduces the solution space of genome mapping from 1+3n to 22.2 + 0.00879n to find one-mismatch for n-mer short reads, Yoichi Takenaka,Shigeto Seno,Hideo Matsuda, Special Interest Group Meetings of High-Throughput Sequencing at International Conference on Intelligent Systems for Molecular Biology (ISMB2012), 2012/07
  • All the 1+3n one-mismatch sequences of n-mer DNA are involved in 22.2+0.00879n strings of Perfect Linear Code words on DNA, Yoichi Takenaka,Shigeto Seno,Hideo Matsuda, International Conference on Intelligent Systems for Molecular Biology (ISMB2012), 2012/07
  • Gene Set Enrichment Analysis for Time-series Gene Expression Profiles, OKUMA YUTA,SENO SHIGETO,TAKENAKA YOICHI,MATSUDA HIDEO, IEICE technical report. Neurocomputing, 2012/06/21
  • Gene Set Enrichment Analysis for Time-series Gene Expression Profiles, Yuta Okuma,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, IPSJ SIG technical reports, 2012/06/21
  • A Method for Isoform Prediction from RNA-Seq Data by Iterative Mapping, Tomoshige Ohno,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, 2012/06
  • A Method for Isoform Prediction from RNA-Seq Data by Iterative Mapping, Tomoshige Ohno,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, 2012/04/19
  • SF-090-4 疾患プロテオミクスによる大腸癌新規関連タンパク質マルチマーカーの開発(SF-090 サージカルフォーラム(90)大腸 基礎-3(遺伝子),第112回日本外科学会定期学術集会), 賀川 義規,竹政 伊知朗,松尾 英一,金子 直樹,瀬尾 茂人,渡辺 真,西村 潤一,水島 恒和,池田 正孝,山本 浩文,関本 貢嗣,松田 秀雄,西村 紀,土岐 祐一郎,森 正樹, 日本外科学会雑誌, 2012/03/05
  • Direct Acyclic Graph for Sequence Structures from Short Read Clustering with Neighboring Reads, Daisuke Ueta,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, IPSJ SIG Notes, 2012/02/23
  • An Estimation Method for Inference of Gene Regulatory Network Using Bayesian Network with Uniting of Partial Problems, Yukito Watanabe,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, The Tenth Asia Pacific Bioinformatics Conference, 2012/01
  • A random forest approach to the detection of a rare disease in the case control studies, Yoshimi Kawakami,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, Genome Informatics Workshop 2011, 2011/12
  • Inference of S-system Models of Gene Regulatory Networks using Immune Algorithm, Tomoyoshi Nakayama,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, 2011/12
  • Network analysis for time-series expression profile using nested effects models, Tatsuya Kitaguchi,Shigeto Seno,YoichiTakenaka,Hideo Matsuda, The Proceedings of the 2011 Annual Conference of the Japanese Society for Bioinformatics, 2011/11
  • Detect unique gene regulatory networks along dendrogram of cell differentiation, Ryo Araki,Yoichi Takenaka,Tomoshige Ohno,Yukito Watanabe,Shigeto Seno,Hideo Matsuda, InCoB/ISCB-Asia Joint Conference 2011, 2011/11
  • Sequence determination and expression estimation of alleles from RNA-Seq data, Yoichi Takenaka,Tomoshige Ohno,Kayo Okuda,Shigeto Seno,Hideo Matsuda, InCoB/ISCB-Asia Joint Conference 2011, 2011/11
  • Mutation-aware clustering with error correction for short-read genome mapping, Daisuke Ueta,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, The Proceedings of the 2011 Annual Conference of the Japanese Society for Bioinformatics, 2011/11
  • Perfect Hamming code with a hash table for faster genome mapping, Yoichi Takenaka,Shigeto Seno,Hideo Matsuda, InCoB/ISCB-Asia Joint Conference 2011, 2011/11
  • Size evolution with a laboratory Escherichia coli strain, Mari Yoshida,Nao Hiramoto,Shigeto Seno,Saburo Tsuru,Bei-Wen Ying,Tetsuya Yomo, 2011/10
  • Perfect Hamming Code as Hash key for Fast Genome Mapping, Yoichi Takenaka,Shigeto Seno,Hideo Matsuda, International Conference on Intelligent Systems for Molecular Biology (ISMB2011), 2011/07
  • Feature selection for specifying experimental conditions that activate gene transcriptions, Sho Ohsuga,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, International Conference on Intelligent Systems for Molecular Biology (ISMB2011), 2011/07
  • A method for risk predicition of a serious disease using rule-based analysis, Masakazu Sugiyama,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, 2011/07
  • A Method for Inference of Gene Regulatory Network based on Bayesian Network with Uniting of Partial Problems, 2011/07
  • A Directed Graphical Gaussian Model for Inferring Gene Regulatory Networks, Tomoshige Ohno,Kiyoshi Yoshizawa,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, International Conference on Intelligent Systems for Molecular Biology (ISMB2011), 2011/07
  • A method for using REST service in bioinformatics workflow by converting to SOAP service, IKEDA SEIGO,KIDO YOSHIYUKI,SENO SHIGETO,TAKENAKA YOICHI,MATSUDA HIDEO, IEICE technical report. Neurocomputing, 2011/06/16
  • A Crosstalk Model and an Estimation Method to Find Crosstalk Genes on Cell Differentiation, Kiyoshi Yoshizawa,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, IPSJ SIG Notes, 2011/02/28
  • A Bootstrapping Method of S-system Model for Estimating Timeline Gene Regulatory Networks, Tomoyoshi Nakayama,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, The Proceedings of the 2010 Annual Conference of the Japanese Society for Bioinformatics, 2010/12
  • An Improved RNA-Seq Analysis Method for Isoform Prediction by Iterative Mapping, Tomoshige Ohno,Motokazu Ishikawa,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, The 21st International Conference on Genome Informatics, 2010/12
  • メタデータを利用した生物情報解析ワークフローの作成支援手法の提案, 福本貴紀,木戸善之,瀬尾茂人,竹中要一,松田秀雄, 情報処理学会関西支部, 2010/09
  • Revealing Regulatory Relationships of Crosstalk with Multiple Time-series Gene Expression Profiles, Kiyoshi Yoshizawa,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, The Proceedings of the 2010 Annual Conference of the Japanese Society for Bioinformatics, 2010/09
  • A metadata management system for composing bioinformatics workflows, Takuya Ishibashi,Yoshiyuki Kido,Takanori Fukumoto,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, 9th International Conference on Bioinformatics (InCoB2010), 2010/09
  • An algorithm for fast exact search of chemical compounds by clustered data beforehand, Ly Nguyen,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, 21st International Workshop on Combinatorial Algorithms, 2010/07
  • A method for detecting structural variants from massive paired end genome sequences by mapping signatures, Daisuke Ueta,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, International Conference on Intelligent Systems for Molecular Biology (ISMB2010), 2010/07
  • An Estimation Method of S-system Model of Gene Regulatory Networks Using Immune Algorithm, Tomoyoshi Nakayama,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, International Conference on Intelligent Systems for Molecular Biology (ISMB2010), 2010/07
  • 立体構造情報と機能情報によるタンパク質間相互作用予測法の改良, 吉川達也,瀬尾茂人,竹中要一,松田秀雄, 情報処理学会研究報告, 2010/03
  • A method to speedup compound searching by grouped similar compounds using the Tanimoto coefficient, Nguyen CamLy,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, IPSJ SIG technical reports, 2010/02/25
  • A Method of Estimation of Crosstalk Genes with Multiple Time-Series Gene Expression Profiles, Kiyoshi Yoshizawa,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, The 20th International Conference on Genome Informatics, 2009/12
  • A Method for the Inference of Gene Regulatory Networks based on Dynamic Bayesian Network with Clustering of Time-Series Subsequences, Yuya Shuto,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, The 20th International Conference on Genome Informatics, 2009/12
  • A Method for Extraction of the Active Compound Groups which Have Strong Relationship between Structure and Activity, Takahiro Kishimoto,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, The 20th International Conference on Genome Informatics, 2009/12
  • A Method for Efficient Execution of Bioinformatics Workflows, Junya Seo,Yoshiyuki Kido,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, Genome Informatics, 2009/12
  • A method for analyzing gene expression profiles based on the underlying structures, Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, International Conference on Intelligent Systems for Molecular Biology (ISMB2009), 2009/07
  • A Method for Inference of Gene Regulatory Networks based on Bayesian Network with Clustering of Time-Series Subsequences, Yuya Shuto,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, International Conference on Intelligent Systems for Molecular Biology (ISMB2009), 2009/07
  • A proposal of repository federation method for integration of Web service information, Nonaka Takafumi,Seo Junya,Kido Yoshiyuki,Seno Shigeto,Takenaka Yoichi,Matsuda Hideo, IPSJ SIG technical reports, 2009/02/26
  • The Validity Evaluation of Gene Regulatory Network Motifs Based on Differential Equation Model, Reiji Ohsugi,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, The Proceedings of the 2008 Annual Conference of the Japanese Society for Bioinformatics, 2008/12
  • Architecture of an Efficient Data Transfer System and Manager for Genome-wide Analysis Workflows, Junya Seo,Yoshiyuki Kido,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, The 3rd MEI International Symposium 2008, 2008/12
  • An Efficient Data Transfer on Workflows for Genome-wide Analysis, Junya Seo,Yoshiyuki Kido,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, The Proceedings of the 2008 Annual Conference of the Japanese Society for Bioinformatics, 2008/12
  • A Method for Analysis of Tissue-Specific Transcriptional Control Using Distributions of Transcription Starting Sites, Mitsuru Jikeya,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, The Proceedings of the 2008 Annual Conference of the Japanese Society for Bioinformatics, 2008/12
  • A Method for Reducing Bounds of Compound Search by Dividing Structure Key, Takashi Shimizu,Yoshiyuki Kido,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, The Proceedings of the 2008 Annual Conference of the Japanese Society for Bioinformatics, 2008/12
  • A Method for Making a New Reference Set of PDB Entries for Retrieving Protein 3D Structures with Structural Annotations, Masahiko Hamada,Yoshiyuki Kido,Shigeto Seno,Hiromi Daiyasu,Yoichi Takenaka,Hideo Matsuda, The Proceedings of the 2008 Annual Conference of the Japanese Society for Bioinformatics, 2008/12
  • Inference of gene regulatory network for adipocyte/osteoblast differentiation, Hideo Matsuda,Yoichi Takenaka,Yosuke Mizuno,Shigeto Seno,Yoshimi Tokuzawa,Yutaka Nakachi,Hidemasa Bono,Yasushi Okazaki, 2008/12
  • 構造キーの分割によるTanimoto係数を用いた化合物検索の計算範囲の絞り込み手法, 清水隆史,木戸善之,瀬尾茂人,竹中要一,松田秀雄, 情報処理学会バイオ情報学研究会報告, 2008/09
  • A method for analysis of tissue-specific alternative transcripts using CAGE tags, Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, International Conference on Intelligent Systems for Molecular Biology (ISMB2008), 2008/07
  • A Data Transmission Method for Web Services in Bioinformatics Workflows, Junya Seo,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, International Conference on Intelligent Systems for Molecular Biology (ISMB2008), 2008/07
  • A Clustering Method for Expression Patterns of Transcription Starting Sites, Mitsuru Jikeya,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, International Conference on Intelligent Systems for Molecular Biology (ISMB2008), 2008/07
  • 化合物フィンガープリントを用いた活性サブクラスの抽出手法, 岸本 貴大,瀬尾 茂人,竹中 要一,松田 秀雄, 日本分子生物学会第8回春季シンポジウム, 2008/05
  • CAGE発現プロファイルを用いた転写開始点の発現パターンのクラスタリング手法, 寺家谷満,瀬尾茂人,竹中要一,松田 秀雄, 日本分子生物学会第8回春季シンポジウム, 2008/05
  • 5ZK-10 A Search Method for Similar Compounds in Very Large Compound Database, Kawamura Gen,Seno Shigeto,Takenaka Yoichi,Matsuda Hideo, 全国大会講演論文集, 2008/03/13
  • A method for speedup of similarity search for compound based on the property of the Tanimoto coefficient, Shimizu Takashi,Seno Shigeto,Takenaka Yoichi,Matsuda Hideo, IPSJ SIG technical reports, 2008/03/03
  • A Combination Method of the Tanimoto Coefficient and Proximity Measure of Random Forest for Compound Activity Prediction, KAWAMURA GEN,SENO SHIGETO,TAKENAKA YOICHI,MATSUDA HIDEO, IPSJ SIG technical reports, 2008/03/03
  • Retrieving Functionally Similar Bioinformatics Workflows using TF-IDF Filtering, Seo Junya,Seno Shigeto,Takenaka Yoichi,Matsuda Hideo, IPSJ SIG Notes, 2007/12/20
  • グラフ構造を用いた組織特異的な選択的スプライシングの解析手法, 瀬尾茂人,竹中要一,松田秀雄, 日本分子生物学会第30回大会, 2007/12
  • A Method for Retrieving Functionally Similar Bioinformatics Workflows, Junya Seo,Shigeto Seno,Yoichi Takenaka,Hideo Matsuda, Proceedings of 2007 Annual Conference of Japanese Society for Bioinformatics, 2007/12
  • 情報解析ワークフローにおけるデータ転送経路の効率化, 瀬尾淳哉,瀬尾茂人,竹中要一,松田秀雄, 日本ソフトウェア科学会第24回大会, 2007/09
  • Pathway Alignment using Reaction Classification Number(metabolic pathsay), SHINMEN GO,SENO SHIGETO,TAKANAKA YOICHI,MATSUDA HIDEO, IPSJ SIG technical reports, 2007/03/05
  • CAGEタグを用いたゲノム領域上の共通発現パターン探索手法, 瀬尾茂人,竹中要一,松田秀雄, 分子生物学会2006フォーラム, 2006/12
  • 構造記述子の情報量に基づく類似活性化合物の探索手法, 木村浩章,瀬尾茂人,竹中要一,松田秀雄, 第34回構造活性相関シンポジウム, 2006/11
  • Extraction of Functionally Similar Bioinformatics Workflows, Junya Seo,Shigeto Senoo,Yoichi Takenaka,Hideo Matsuda, 2006/07
  • A Method for Extracting the Tissue-Specific Metabolic-Pathways based on CAGE, Sakooka Yousuke,Seno Shigeto,Taki Kohei,Takenaka Yoichi,Matsuda Hideo, Proceedings of the IEICE General Conference, 2006/03/08
  • A method for clustering gene expression data based on graph structure, Shigeto Seno,Reiji Teramoto,Yoichi Takenaka,Hideo Matsuda, Genome Informatics, 2004/12
  • 遺伝子発現プロファイル間の局所的な類似性を考慮したクラスタリング手法, 瀬尾茂人,寺本礼仁,竹中要一,松田秀雄, 第27回日本分子生物学会年会, 2004/12
  • 相対エントロピーとグラフ構造に基づく遺伝子発現プロファイルのクラスタリング手法, 瀬尾茂人,寺本礼仁,竹中要一,松田秀雄, 第26回日本分子生物学会年会, 2003/12
  • P-Quasi complete linkage clustering method for gene-expression profiles based on distribution analysis, Shigeto Seno,Reiji Teramoto,Yoichi Takenaka,Hideo Matsuda, International Conference on Intelligent Systems for Molecular Biology, 2003/07
  • P-Quasi Complete Linkage Analysis for Gene-Expression Data, Shigeto Seno,Reiji Teramoto,Hideo Matsuda, Proceedings of 1st IEEE Computer Society Bioinformatics Conference (CSB2002), 2002/12
  • グラフ構造に基づく遺伝子発現プロファイルのクラスタリング手法, 瀬尾茂人,寺本礼仁,竹中要一,松田秀雄, 第25回日本分子生物学会年
  • 準完全グラフ構造に基づく発現プロファイルのクラスタリング手法, 瀬尾茂人,寺本礼仁,竹中要一,松田秀雄, 第2回情報科学技術フォーラム

Committee Memberships

  • ICBBE, Technical Program Comittee, 2020 - Present
  • Mathematical Modeling and Problem Solving”Satellite Workshop; International Conference on Parallel & Distributed Processing Techniques & Applications, プログラム委員, 2014/07 - Present
  • 日本バイオインフォマティクス学会, IIBMP2022 実行委員・プログラム委員, 2021/10 - 2022/12
  • NGS EXPO, NGS EXPO 2022 ファシリテーター, 2022/03 - 2022/10
  • 一般社団法人情報処理学会, 論文誌ジャーナル/JIP編集委員会, 2020/04 - 2022/03
  • 情報処理学会, 数理モデル化と問題解決(MPS)研究会編集委員, 2017/04 - 2021/03
  • 情報処理学会, 論文誌ジャーナル/JIP編集委員, 2014/06 - 2018/05
  • 情報処理学会, 論文賞選定ワーキンググループ委員, 2015/12 - 2017/03
  • 情報処理学会, 数理モデル化と問題解決(MPS)研究会運営委員, 2013/04 - 2017/03
  • 情報処理学会, 論文誌ジャーナル「学生・若手研究者論文」特集号編集委員, 2015/08 - 2016/03