-
SSL-VQ: Vector-quantized variational autoencoders for semi-supervised prediction of therapeutic targets across diverse diseases
Satoko Namba, Chen Li, Noriko Otani, Yoshihiro Yamanishi
Bioinformatics 2025/01/28 Research paper (scientific journal)
Publisher: Oxford University Press (OUP)
-
De novo generation of dual-target compounds using artificial intelligence
Kasumi Yasuda, Francois Berenger, Kazuma Amaike, Ayaka Ueda, Tomoya Nakagomi, Genki Hamasaki, Chen Li, Noriko Yuyama Otani, Kazuma Kaitoh, Koji Tsuda, Kenichiro Itami, Yoshihiro Yamanishi
iScience Vol. 28 No. 1 p. 111526-111526 2025/01 Research paper (scientific journal)
Publisher: Elsevier BV
-
AI-driven transcriptome profile-guided hit molecule generation
Chen Li, Yoshihiro Yamanishi
Artificial Intelligence 2025/01 Research paper (scientific journal)
-
Advancing Aspect-Based Sentiment Analysis Through Deep Learning Models
Chen Li, Huidong Tang, Jinli Zhang, Xiujing Guo, Debo Cheng, Yasuhiko Morimoto
Lecture Notes in Computer Science p. 228-242 2024/12/14 Part of collection (book)
Publisher: Springer Nature Singapore
-
When Molecular GAN Meets Byte-Pair Encoding
Huidong Tang, Chen Li, Yasuhiko Morimoto
Lecture Notes in Computer Science p. 160-174 2024/12/13 Part of collection (book)
Publisher: Springer Nature Singapore
-
Tailored Federated Learning: Leveraging Direction Regulation and Knowledge Distillation
Huidong Tang, Chen Li, Huachong Yu, Sayaka Kamei, Yasuhiko Morimoto
Lecture Notes in Computer Science p. 270-284 2024/12/13 Part of collection (book)
Publisher: Springer Nature Singapore
-
Mining area skyline objects from map-based big data using Apache Spark framework
Chen Li, Ye Zhu, Yang Cao, Jinli Zhang, Annisa Annisa, Debo Cheng, Yasuhiko Morimoto
Array 2024/12 Research paper (scientific journal)
-
Eficient docking simulation-based generation of bioactive compounds with deep generative model
H. Hoshino, C. Li, Y. Yamanishi
2024/10
-
Predicting Drug-Target Interactions by Measuring Confidence with Consistent Causal Neighborhood Interventions.
Wenting Ye, Chen Li, Wen Zhang, Jiuyong Li, Lin Liu, Debo Cheng, Zaiwen Feng
Methods (San Diego, Calif.) 2024/08/30 Research paper (scientific journal)
-
Transcriptionally Conditional Recurrent Neural Network for De Novo Drug Design.
Yuki Matsukiyo, Atsushi Tengeiji, Chen Li, Yoshihiro Yamanishi
Journal of chemical information and modeling Vol. 64 No. 15 p. 5844-5852 2024/08/12 Research paper (scientific journal)
-
Quantitative evaluation of molecular generation performance of graph-based GANs
Jinli Zhang, Zhenbo Wang, Zongli Jiang, Man Wu, Chen Li, Yoshihiro Yamanishi
Software Quality Journal Vol. 32 No. 2 p. 791-819 2024/06 Research paper (scientific journal)
-
Ripple Knowledge Graph Convolutional Networks for Recommendation Systems
Chen Li, Yang Cao, Ye Zhu, Debo Cheng, Chengyuan Li, Yasuhiko Morimoto
Machine Intelligence Research Vol. 21 No. 3 p. 481-494 2024/06 Research paper (scientific journal)
-
Two-way Recommendation System for Supervisor Selection using Historical Data and Skyband-view Queries
Annisa Annisa, Muhammad Rayhan Adyatma, Global Ilham Sampurno, Chen Li
Journal of Advanced Research in Applied Sciences and Engineering Technology Vol. 34 No. 2 p. 305-314 2024/04 Research paper (scientific journal)
-
GxVAEs: Two Joint VAEs Generate Hit Molecules from Gene Expression Profiles
Chen Li, Yoshihiro Yamanishi
Proceedings of the AAAI Conference on Artificial Intelligence Vol. 38 No. 12 p. 13455-13463 2024/03/25 Research paper (international conference proceedings)
-
Molecular Generative Adversarial Network with Multi-Property Optimization
Chen Li
ArXiv 2024 Research paper (scientific journal)
-
機械学習による治療標的分子の予測と希 少疾患への応用
第10回CBI学会個別化医療研究会 2024
-
TenGAN: Pure Transformer Encoders Make an Efficient Discrete GAN for De Novo Molecular Generation
Chen Li, Yoshihiro Yamanishi
Proceedings of Machine Learning Research Vol. 238 p. 361-369 2024 Research paper (international conference proceedings)
-
MacGAN: A Moment-Actor-Critic Reinforcement Learning-Based Generative Adversarial Network for Molecular Generation
Huidong Tang, Chen Li, Shuai Jiang, Huachong Yu, Sayaka Kamei, Yoshihiro Yamanishi, Yasuhiko Morimoto
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 14331 LNCS p. 127-141 2024 Research paper (international conference proceedings)
-
EarlGAN: An enhanced actor–critic reinforcement learning agent-driven GAN for de novo drug design
Huidong Tang, Chen Li, Shuai Jiang, Huachong Yu, Sayaka Kamei, Yoshihiro Yamanishi, Yasuhiko Morimoto
Pattern Recognition Letters Vol. 175 p. 45-51 2023/11 Research paper (scientific journal)
-
FedMCC: Federated multi-center clustering algorithm to improve privacy healthcare.
Zhiwei An, Jinli Zhang, Zongli Jiang, Jinlian Du, Zhiyi Yin, Chen Li
Methods (San Diego, Calif.) Vol. 218 p. 94-100 2023/10 Research paper (scientific journal)
-
Convolutional autoencoder based on latent subspace projection for anomaly detection.
Qien Yu, Chen Li, Ye Zhu, Takio Kurita
Methods (San Diego, Calif.) Vol. 214 p. 48-59 2023/06 Research paper (scientific journal)
-
Performance Evaluation of a Cloud Datacenter Using CPU Utilization Data
Chen Li, Junjun Zheng, Hiroyuki Okamura, Tadashi Dohi
Mathematics Vol. 121 No. 276(R2021 34-38) 2023/01/18
-
A note on Markovian arrival process parameter estimation of quasi-birth-death queueing systems with utilization data
2023
-
Saffold-retained transformer GAN for molecular generation with chemical property optimization
2023
-
複数の治療標的分子にデュアルで作用す る医薬品化合物を構造生成するAI開発
2023
-
A Session Recommendation Model Based on Heterogeneous Graph Neural Network
Zhiwei An, Yirui Tan, Jinli Zhang, Zongli Jiang, Chen Li
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 14119 LNAI p. 160-171 2023 Research paper (international conference proceedings)
-
An Enhanced Distributed Algorithm for Area Skyline Computation Based on Apache Spark
Chen Li, Yang Cao, Ye Zhu, Jinli Zhang, Annisa Annisa, Debo Cheng, Huidong Tang, Shuai Jiang, Kenta Maruyama, Yasuhiko Morimoto
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 14120 LNAI p. 35-43 2023 Research paper (international conference proceedings)
-
A Visual Interpretation-Based Self-improved Classification System Using Virtual Adversarial Training
Shuai Jiang, Sayaka Kamei, Chen Li, Shengzhe Hou, Yasuhiko Morimoto
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 14179 LNAI p. 548-562 2023 Research paper (international conference proceedings)
-
Semi-supervised Classification Based on Graph Convolution Encoder Representations from BERT
Jinli Zhang, Zongli Jiang, Chen Li, Zhenbo Wang
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 14178 LNAI p. 199-213 2023 Research paper (international conference proceedings)
-
Senti-EGCN: An Aspect-Based Sentiment Analysis System Using Edge-Enhanced Graph Convolutional Networks
Chen Li, Junjun Zheng, Peng Ju, Yasuhiko Morimoto
Proceedings - 2023 10th International Conference on Dependable Systems and Their Applications, DSA 2023 p. 722-729 2023 Research paper (international conference proceedings)
-
Mode Collapse Alleviation of Reinforcement Learning-based GANs in Drug Design
Zongli Jiang, Zhenbo Wang, Jinli Zhang, Man Wub, Chen Li, Yoshihiro Yamanishi
Proceedings - 2023 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023 p. 3045-3052 2023 Research paper (international conference proceedings)
Publisher: IEEE
-
Causal Intervention for Measuring Confidence in Drug-Target Interaction Prediction
Wenting Ye, Chen Li, Yang Xie, Wen Zhang, Hong Yu Zhang, Bowen Wang, Debo Cheng, Zaiwen Feng
Proceedings - 2023 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023 p. 395-400 2023 Research paper (international conference proceedings)
Publisher: IEEE
-
SpotGAN: A Reverse-Transformer GAN Generates Scaffold-Constrained Molecules with Property Optimization
Chen Li, Yoshihiro Yamanishi
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 14169 LNAI p. 323-338 2023 Research paper (international conference proceedings)
-
Performance Evaluation of a Cloud Datacenter Using CPU Utilization Data
CHEN LI, Junjun Zheng, Hiroyuki Okamura, Tadashi Dohi
Mathematics Vol. 11 No. 3 2023/01 Research paper (scientific journal)
-
Hierarchical Categorical Generative Modeling for Multi-omics Cancer Subtyping
Ziwei Yang, Lingwei Zhu, Chen Li, Zheng Chen, Naoki Ono, Md Altaf-Ul-Amin, Shigehiko Kanaya
2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) p. 1350-1355 2022/12/06 Research paper (international conference proceedings)
Publisher: IEEE
-
Automatic Sleep Staging via Frequency-Wise Spiking Neural Networks
Haohui Jia, Ziwei Yang, Pei Gao, Man Wu, Chen Li, Yirong Kan, Renyuan Zhang
2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) p. 1028-1033 2022/12/06 Research paper (international conference proceedings)
Publisher: IEEE
-
Exploring the Feasibility of Transformer Based Models on Question Relatedness
Honglin Shu, Pei Gao, Ziwei Yang, Chen Li, Man Wu
2022 IEEE 24th Int Conf on High Performance Computing & Communications; 8th Int Conf on Data Science & Systems; 20th Int Conf on Smart City; 8th Int Conf on Dependability in Sensor, Cloud & Big Data Systems & Application (HPCC/DSS/SmartCity/DependSys) 2022/12 Research paper (international conference proceedings)
Publisher: IEEE
-
Matching Using Sufficient Dimension Reduction for Heterogeneity Causal Effect Estimation
Haoran Zhao, Yinghao Zhang, Debo Cheng, Chen Li, Zaiwen Feng
2022 IEEE 24th Int Conf on High Performance Computing & Communications; 8th Int Conf on Data Science & Systems; 20th Int Conf on Smart City; 8th Int Conf on Dependability in Sensor, Cloud & Big Data Systems & Application (HPCC/DSS/SmartCity/DependSys) 2022/12 Research paper (international conference proceedings)
Publisher: IEEE
-
An Efficient Transformer Encoder-Based Classification of Malware Using API Calls
Chen Li, Zheng Chen, Junjun Zheng
2022 IEEE 24th Int Conf on High Performance Computing & Communications; 8th Int Conf on Data Science & Systems; 20th Int Conf on Smart City; 8th Int Conf on Dependability in Sensor, Cloud & Big Data Systems & Application (HPCC/DSS/SmartCity/DependSys) 2022/12 Research paper (international conference proceedings)
Publisher: IEEE
-
Transformer-based Objective-reinforced Generative Adversarial Network to Generate Desired Molecules
Chen Li, Chikashige Yamanaka, Kazuma Kaitoh, Yoshihiro Yamanishi
Proceedings of the Thirty-First International Joint Conference on Artificial Intelligence p. 3884-3890 2022/07 Research paper (international conference proceedings)
Publisher: International Joint Conferences on Artificial Intelligence Organization
-
Software Reliability Prediction through Encoder-Decoder Recurrent Neural Networks
Chen Li, Junjun Zheng, Hiroyuki Okamura, Tadashi Dohi
International Journal of Mathematical, Engineering and Management Sciences Vol. 7 No. 3 p. 325-340 2022/05/08 Research paper (scientific journal)
Publisher: Ram Arti Publishers
-
Molecular generation using sequence-based transformer generative adversarial network
2022
-
Parameter Estimation of Markovian Arrivals with Utilization Data
Chen LI, Junjun ZHENG, Hiroyuki OKAMURA, Tadashi DOHI
IEICE Transactions on Communications Vol. E105.B No. 1 p. 1-10 2022/01/01 Research paper (scientific journal)
Publisher: Institute of Electronics, Information and Communications Engineers ({IEICE})
-
Hierarchical Bayesian Parameter Estimation of Queueing Systems using Utilization Data
Li Chen, Zheng Junjun, Okamura Hiroyuki, Dohi Tadashi
International Journal of Performability Engineering Vol. 18 No. 5 p. 307-307 2022 Research paper (scientific journal)
Publisher: Totem Publisher, Inc.
-
API Call-Based Malware Classification Using Recurrent Neural Networks
Chen Li, Junjun Zheng
Journal of Cyber Security and Mobility Vol. 10 No. 3 p. 617-640 2021/05/27 Research paper (scientific journal)
Publisher: River Publishers
-
Privacy-preserving Top-k Dominating Queries in Distributed Multi-party Databases
Mahboob Qaosar, Kazi Md. Rokibul Alam, Chen Li, Yasuhiko Morimoto
2019 IEEE International Conference on Big Data (Big Data) 2019/12 Research paper (international conference proceedings)
Publisher: IEEE
-
Secure k-Skyband Computation Framework in Distributed Multi-party Databases
CHEN LI
Information Sciences 2019/12 Research paper (scientific journal)
-
A Multi-factor Approach for Stock Price Prediction by using Recurrent Neural Networks
Xu Zhang, Chen Li, Yasuhiko Morimoto
Bulletin of Networking, Computing, Systems, and Software Vol. 8 No. 1 p. 9-13 2019/10
-
Multi-factor Based Stock Price Prediction Using Hybrid Neural Networks with Attention Mechanism
Chen Li, Xu Zhang, Mahboob Qaosar, Saleh Ahmed, Kazi Md. Rokibul Alam, Yasuhiko Morimoto
2019 IEEE Intl Conf on Dependable, Autonomic and Secure Computing, Intl Conf on Pervasive Intelligence and Computing, Intl Conf on Cloud and Big Data Computing, Intl Conf on Cyber Science and Technology Congress (DASC/PiCom/CBDCom/CyberSciTech) p. 961-966 2019/08 Research paper (international conference proceedings)
Publisher: IEEE
-
Privacy-Aware MapReduce Based Multi-Party Secure Skyline Computation
Saleh Ahmed, Mahboob Qaosar, Asif Zaman, Md. Anisuzzaman Siddique, Chen Li, Kazi Md. Rokibul Alam, Yasuhiko Morimoto
Information Vol. 10 No. 6 p. 207-207 2019/06/08 Research paper (scientific journal)
Publisher: MDPI AG
-
A Framework for Privacy-Preserving Multi-Party Skyline Query Based on Homomorphic Encryption
Qaosar, M., Alam, K.M.R., Zaman, A., Li, C., Ahmed, S., Siddique, M.A., Morimoto, Y.
IEEE Access Vol. 7 p. 167481-167496 2019 Research paper (scientific journal)
Publisher: Institute of Electrical and Electronics Engineers ({IEEE})
-
Parameter Estimation of M-{t}/M/1/K Queueing Systems with Utilization Data
Li, C., Okamura, H., Dohi, T.
IEEE Access Vol. 7 p. 42664-42671 2019 Research paper (scientific journal)
Publisher: Institute of Electrical and Electronics Engineers ({IEEE})
-
Capturing Temporal Dynamics of Users’ Preferences from Purchase History Big Data for Recommendation System
Chen Li, Minjia He, Mahboob Qaosar, Saleh Ahmed, Yasuhiko Morimoto
2018 IEEE International Conference on Big Data (Big Data) 2018/12 Research paper (international conference proceedings)
Publisher: IEEE
-
MapReduce Algorithm for Location Recommendation by Using Area Skyline Query
CHEN LI
Algorithms 2018/11/25 Research paper (scientific journal)
-
Positional Isomers of Chromophore-Peptide Conjugates Self-Assemble into Different Morphologies.
Urszula Lewandowska, Stefano Corra, Wojciech Zajaczkowski, Nellie A K Ochs, Michal S Shoshan, Junki Tanabe, Sebastian Stappert, Chen Li, Eiji Yashima, Wojciech Pisula, Klaus Müllen, Helma Wennemers
Chemistry (Weinheim an der Bergstrasse, Germany) Vol. 24 No. 48 p. 12623-12629 2018/08/27 Research paper (scientific journal)
-
Hybrid sensing and wearable smart device for health monitoring and medication: opportunities and challenges
M. Qaosar, S. Ahmed, Chen Li, Y. Morimoto
2018/03
-
MapReduce-based computation of area skyline query for selecting good locations in a map
Chen Li, Annisa, Asif Zaman, Yasuhiko Morimoto
2017 IEEE International Conference on Big Data (Big Data) 2017/12 Research paper (international conference proceedings)
Publisher: IEEE
