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STM study of unusual link structure formation on rutile TiO2(110)-(1×2) surface induced by water adsorption and low-temperature annealing
Fengxuan Li, Daiki Katsube, Zhuo Diao, Hayato Yamashita, Masayuki Abe
Physica Scripta 2025/07/02 Research paper (scientific journal)
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A metaverse laboratory setup for interactive atom visualization and manipulation with scanning probe microscopy
Zhuo Diao, Hayato Yamashita, Masayuki Abe
Scientific Reports Vol. 15 No. 1 2025/05/20 Research paper (scientific journal)
Publisher: Springer Science and Business Media LLC
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Anchor point based image registration for absolute scale topographic structure detection in microscopy.
Zhuo Diao, Zijie Meng, Fengxuan Li, Linfeng Hou, Hayato Yamashita, Tetsuya Tohei, Masayuki Abe, Akira Sakai
Scientific reports Vol. 15 No. 1 p. 13486-13486 2025/04/18 Research paper (scientific journal)
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Structural insights into CDF1 accumulation on the CONSTANS promoter via a plant-specific DNA-binding domain.
Hirotake Furihata, Zhangliang Zhu, Kaisei Nishida, Yasuhito Sakuraba, Akihiro Tsuji, Hayato Yamashita, Shohei Nosaki, Ryo Tachibana, Ayumi Yamagami, Yoshiki Ikeda, Masayuki Abe, Tatsuya Sawasaki, Takeshi Nakano, Shuichi Yanagisawa, Masaru Tanokura, Takuya Miyakawa
Nature plants Vol. 11 No. 4 p. 836-848 2025/04 Research paper (scientific journal)
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Leveraging large language model and social network service for automation in scanning probe microscopy
Zhuo Diao, Hayato Yamashita, Masayuki Abe
Measurement Science and Technology Vol. 36 No. 4 p. 047001-047001 2025/03/28 Research paper (scientific journal)
Publisher: IOP Publishing
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Membrane tubulation induced by a bacterial glycolipid
Kaoru Nomura, Akihiro Tsuji, Hayato Yamashita, Masayuki Abe, Kohki Fujikawa, Shoko Mori, Tsukiho Osawa, Hiromi Toyonaga, Tomohiro Osugi, Kazuma Yasuhara, Kenichi Morigaki, Ken-ichi Nishiyama, Keiko Shimamoto
Scientific Reports Vol. 15 No. 1 2025/03/20 Research paper (scientific journal)
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AI‐Equipped Scanning Probe Microscopy for Autonomous Site‐Specific Atomic‐Level Characterization at Room Temperature
Zhuo Diao, Keiichi Ueda, Linfeng Hou, Fengxuan Li, Hayato Yamashita, Masayuki Abe
Small Methods Vol. 9 No. 1 2024/09/06 Research paper (scientific journal)
Publisher: Wiley
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Existence probabilities of single Si atoms diffusing in Si(111)-(7 × 7) half-unit cells at room temperature
K. Ueda, Z. Diao, L. Hou, H. Yamashita, M. Abe
Applied Physics Letters Vol. 125 No. 4 2024/07/22 Research paper (scientific journal)
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Feature correlation method for image reconstruction evaluation in under-sampled scanning probe microscopy
Keiichi Ueda, Zhuo Diao, Linfeng Hou, Hayato Yamashita, Masayuki Abe
Japanese Journal of Applied Physics 2024/04/01 Research paper (scientific journal)
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Time-reduction imaging method for scanning-probe microscopy using a compressed sensing algorithm based on sequential reconstruction method
Keiichi Ueda, Diao Zhuo, Linfeng Hou, Hayato Yamashita, Masayuki Abe
Journal of the Ceramic Society of Japan Vol. 131 No. 10 p. 645-650 2023/10/01 Research paper (scientific journal)
Publisher: Ceramic Society of Japan
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Automatic drift compensation for nanoscale imaging using feature point matching
Zhuo Diao, Keiichi Ueda, Linfeng Hou, Hayato Yamashita, Oscar Custance, Masayuki Abe
Applied Physics Letters Vol. 122 No. 12 2023/03/20 Research paper (scientific journal)
Publisher: AIP Publishing
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Reduction of noise induced by power supply lines using phase-locked loop
M. Abe, H. Yamashita, S. Jinno, O. Custance, H. Toki
Review of Scientific Instruments Vol. 93 No. 11 p. 113704-113704 2022/11/01 Research paper (scientific journal)
Publisher: AIP Publishing
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Dimerization processes for light-regulated transcription factor Photozipper visualized by high-speed atomic force microscopy
Akihiro Tsuji, Hayato Yamashita, Osamu Hisatomi, Masayuki Abe
Scientific reports Vol. 12 No. 1 2022/08/08 Research paper (scientific journal)
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Photoactivatable Materials for Versatile Single-Cell Patterning Based on the Photocaging of Cell-Anchoring Moieties through Lipid Self-Assembly.
Shinya Yamahira, Ryuji Misawa, Takahiro Kosaka, Mondong Tan, Shin Izuta, Hayato Yamashita, Yuji Heike, Akimitsu Okamoto, Teruyuki Nagamune, Satoshi Yamaguchi
Journal of the American Chemical Society 2022/06/29 Research paper (scientific journal)
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Antibacterial Activity of Membrane-Permeabilizing Bactericidal Cyclodextrin Derivatives
Hatsuo Yamamura, Tatsuya Hagiwara, Yuma Hayashi, Kayo Osawa, Hisato Kato, Takashi Katsu, Kazufumi Masuda, Ayumi Sumino, Hayato Yamashita, Ryo Jinno, Masayuki Abe, Atsushi Miyagawa
ACS Omega Vol. 6 No. 47 p. 31831-31842 2021/11/15 Research paper (scientific journal)
Publisher: American Chemical Society (ACS)
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Local states of chromatin compaction at transcription start sites control transcription levels.
Satoru Ishihara, Yohei Sasagawa, Takeru Kameda, Hayato Yamashita, Mana Umeda, Naoe Kotomura, Masayuki Abe, Yohei Shimono, Itoshi Nikaido
Nucleic acids research Vol. 49 No. 14 p. 8007-8023 2021/07/07 Research paper (scientific journal)
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In situ measurements of intracellular thermal conductivity using heater-thermometer hybrid diamond nanosensors
Shingo Sotoma, Chongxia Zhong, James Chen Yong Kah, Hayato Yamashita, Taras Plakhotnik, Yoshie Harada, Madoka Suzuki
Science Advances Vol. 7 No. 3 2021/01/15 Research paper (scientific journal)
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A helical amplification system composed of artificial nucleic acids
Hiromu Kashida, Keiji Nishikawa, Wenjing Shi, Toshiki Miyagawa, Hayato Yamashita, Masayuki Abe, Hiroyuki Asanuma
Chemical Science Vol. 12 No. 5 p. 1656-1660 2021 Research paper (scientific journal)
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Automated extraction of the short-range part of the interaction in non-contact atomic force microscopy
Zhuo Diao, Daiki Katsube, Hayato Yamashita, Yoshiaki Sugimoto, Oscar Custance, Masayuki Abe
Applied Physics Letters Vol. 117 No. 3 2020/07/20 Research paper (scientific journal)
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Flexure Structural Scanner of Tip Scan Type for High-speed Scanning Tunneling Microscopy
Hayato Yamashita, Nobuhiro Handa, Yuma Higashiura, Masayuki Abe
e-Journal of Surface Science and Nanotechnology Vol. 18 p. 146-151 2020/04/11 Research paper (scientific journal)
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Affinity of rhodopsin to raft enables the aligned oligomer formation from dimers: Coarse-grained molecular dynamics simulation of disk membranes
Yukito Kaneshige, Fumio Hayashi, Kenichi Morigaki, Yasushi Tanimoto, Hayato Yamashita, Masashi Fujii, Akinori Awazu
PLoS ONE Vol. 15 No. 2 2020 Research paper (scientific journal)
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Enhancement of cell differentiation on a surface potential-controlled nitrogen-doped TiO2 surface
Masami HASHIMOTO, Satoshi KITAOKA, Maiko FURUYA, Hiroyasu KANETAKA, Kazuhiko HOSHIKAYA, Hayato YAMASHITA, Masayuki ABE
Journal of the Ceramic Society of Japan Vol. 127 No. 9 p. 636-641 2019/09/01 Research paper (scientific journal)
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Surface structure switching between (1 × 1) and (1 × 2) of rutile TiO2(110) with scanning tunneling microscopy and low energy electron diffraction
Shoki Ojima, Daiki Katsube, Hayato Yamashita, Yuji Miyato, Satoshi Abo, Masayuki Abe
Japanese Journal of Applied Physics Vol. 58 No. SI 2019/01
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Measurement of the Lateral Charge Distribution in Silicon Generated by High-Energy Ion Incidence
Satoshi Abo, Kenichi Tani, Fujio Wakaya, Shinobu Onoda, Yuji Miyato, Hayato Yamashita, Masayuki Abe
Proceedings of the International Conference on Ion Implantation Technology Vol. 2018-September No. IIT p. 156-159 2018/09
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Control of surface potential and hydroxyapatite formation on TiO2 scales containing nitrogen-related defects
Masami Hashimoto, Takafumi Ogawa, Satoshi Kitaoka, Shunsuke Muto, Maiko Furuya, Hiroyasu Kanetaka, Masayuki Abe, Hayato Yamashita
Acta Materialia Vol. 155 p. 379-385 2018/08/15 Research paper (scientific journal)
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Bifacial Nucleobases for Hexaplex Formation in Aqueous Solution.
Kashida H, Hattori Y, Tazoe K, Inoue T, Nishikawa K, Ishii K, Uchiyama S, Yamashita H, Abe M, Kamiya Y, Asanuma H
Journal of the American Chemical Society Vol. 140 No. 27 p. 8456-8462 2018/07 Research paper (scientific journal)
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MC3T3-E1 Cellular Response and Protein Detection on Surface Potential-Controlled TiO2 Scale in Serum-Containing Medium
M. Hashimoto, T. Ogawa, S. Kitaoka, S. Muto, M. Furuya, H. Kanetaka, M. Abe, H. Yamashita
Key Engineering Materials Vol. 782 p. 218-223 2018
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Combined pulsed laser deposition and non-contact atomic force microscopy system for studies of insulator metal oxide thin films
Daiki Katsube, Hayato Yamashita, Satoshi Abo, Masayuki Abe
Beilstein Journal of Nanotechnology Vol. 9 No. 1 p. 686-692 2018 Research paper (scientific journal)
Publisher: Beilstein-Institut Zur Forderung der Chemischen Wissenschaften
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Characterization of X-ray charge neutralizer using carbon-nanotube field emitter
Shuhei Okawaki, Satoshi Abo, Fujio Wakaya, Hayato Yamashita, Masayuki Abe, Mikio Takai
Japanese Journal of Applied Physics Vol. 55 No. 6S1 p. 06GF10-06GF10 2016/05/20 Research paper (scientific journal)
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A Preparation Method for Atomically Clean Sapphire Surfaces and High Resolution Topographic Method for Their Imaging by Non-Contact Atomic Force Microscopy
Daiki Katsube, Yutaro Takase, Hayato Yamashita, Satoshi Abo, Fujio Wakaya, Masayuki Abe
MATERIALS TRANSACTIONS Vol. 56 No. 8 p. 1310-1313 2015 Research paper (scientific journal)
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Role of trimer–trimer interaction of bacteriorhodopsin studied by optical spectroscopy and high-speed atomic force microscopy
Hayato Yamashita, Keiichi Inoue, Mikihiro Shibata, Takayuki Uchihashi, Jun Sasaki, Hideki Kandori, Toshio Ando
Journal of Structural Biology Vol. 184 No. 1 p. 2-11 2013/10 Research paper (scientific journal)
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Single-Molecule Imaging on Living Bacterial Cell Surface by High-Speed AFM
Hayato Yamashita, Azuma Taoka, Takayuki Uchihashi, Tomoya Asano, Toshio Ando, Yoshihiro Fukumori
Journal of Molecular Biology Vol. 422 No. 2 p. 300-309 2012/09 Research paper (scientific journal)
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Structural Changes in Bacteriorhodopsin in Response to Alternate Illumination Observed by High‐Speed Atomic Force Microscopy
Mikihiro Shibata, Takayuki Uchihashi, Hayato Yamashita, Hideki Kandori, Toshio Ando
Angewandte Chemie International Edition Vol. 50 No. 19 p. 4410-4413 2011/04/06 Research paper (scientific journal)
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High-speed atomic force microscopy shows dynamic molecular processes in photoactivated bacteriorhodopsin
Mikihiro Shibata, Hayato Yamashita, Takayuki Uchihashi, Hideki Kandori, Toshio Ando
Nature Nanotechnology Vol. 5 No. 3 p. 208-212 2010/02/14 Research paper (scientific journal)
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High-Speed Atomic Force Microscopy Techniques for Observing Dynamic Biomolecular Processes
Daisuke Yamamoto, Takayuki Uchihashi, Noriyuki Kodera, Hayato Yamashita, Shingo Nishikori, Teru Ogura, Mikihiro Shibata, Toshio Ando
Methods in Enzymology p. 541-564 2010 Part of collection (book)
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Dynamics of bacteriorhodopsin 2D crystal observed by high-speed atomic force microscopy
Hayato Yamashita, Kislon Voïtchovsky, Takayuki Uchihashi, Sonia Antoranz Contera, John F. Ryan, Toshio Ando
Journal of Structural Biology Vol. 167 No. 2 p. 153-158 2009/08 Research paper (scientific journal)
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High-speed AFM and nano-visualization of biomolecular processes
Toshio Ando, Takayuki Uchihashi, Noriyuki Kodera, Daisuke Yamamoto, Atsushi Miyagi, Masaaki Taniguchi, Hayato Yamashita
Pflügers Archiv - European Journal of Physiology Vol. 456 No. 1 p. 211-225 2007/12/20 Research paper (scientific journal)
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High-speed atomic force microscopy for observing dynamic biomolecular processes
Toshio Ando, Takayuki Uchihashi, Noriyuki Kodera, Daisuke Yamamoto, Masaaki Taniguchi, Atsushi Miyagi, Hayato Yamashita
Journal of Molecular Recognition Vol. 20 No. 6 p. 448-458 2007/09/27 Research paper (scientific journal)
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Tip-sample distance control using photothermal actuation of a small cantilever for high-speed atomic force microscopy
Hayato Yamashita, Noriyuki Kodera, Atsushi Miyagi, Takayuki Uchihashi, Daisuke Yamamoto, Toshio Ando
Review of Scientific Instruments Vol. 78 No. 8 2007/08/01 Research paper (scientific journal)
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Fast phase imaging in liquids using a rapid scan atomic force microscope
Takayuki Uchihashi, Toshio Ando, Hayato Yamashita
Applied Physics Letters Vol. 89 No. 21 2006/11/20 Research paper (scientific journal)
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Feed-Forward Compensation for High-Speed Atomic Force Microscopy Imaging of Biomolecules
Takayuki Uchihashi, Noriyuki Kodera, Hisanori Itoh, Hayato Yamashita, Toshio Ando
Japanese Journal of Applied Physics Vol. 45 No. 3S p. 1904-1904 2006/03/01 Research paper (scientific journal)
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High-Speed Atomic Force Microscopy for Studying the Dynamic Behavior of Protein Molecules at Work
Toshio Ando, Takayuki Uchihashi, Noriyuki Kodera, Atsushi Miyagi, Ryo Nakakita, Hayato Yamashita, Mitsuru Sakashita
Japanese Journal of Applied Physics Vol. 45 No. 3S p. 1897-1897 2006/03/01 Research paper (scientific journal)
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High-speed atomic force microscopy for capturing dynamic behavior of protein molecules at work
Toshio Ando, Noriyuki Kodera, Takayuki Uchihashi, Atsushi Miyagi, Ryo Nakakita, Hayato Yamashita, Keiko Matada
e-Journal of Surface Science and Nanotechnology Vol. 3 p. 384-392 2005/12/07 Research paper (international conference proceedings)
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Active damping of the scanner for high-speed atomic force microscopy
Noriyuki Kodera, Hayato Yamashita, Toshio Ando
Review of Scientific Instruments Vol. 76 No. 5 2005/04/26 Research paper (scientific journal)