顔写真

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BEKKER GERARDUS GERTRUDIS THEODORUS BERNARDUS
BEKKER GERARDUS GERTRUDIS THEODORUS BERNARDUS
BEKKER GERARDUS GERTRUDIS THEODORUS BERNARDUS
BEKKER GERARDUS GERTRUDIS THEODORUS BERNARDUS
Institute for Protein Research,Specially Appointed Associate Professor (Lecturer)(Full Time)

Education 3

  1. Osaka University Graduate School of Frontier Biosciences

    2014 - 2017

  2. Radboud University Msc Medical Biology

    2008 - 2012

  3. HAN University of Applied Sciences B Bioinformatics

    2004 - 2008

Research Areas 3

  1. Informatics / Biological, health, and medical informatics /

  2. Informatics / Computational science /

  3. Life sciences / Biophysics /

Awards 1

  1. Osaka University Prize

    Osaka University 2024/11

Papers 39

  1. Protein Data Bank Japan: Improved tools for sequence‐oriented analysis of protein structures

    Gert‐Jan Bekker, Chioko Nagao, Matsuyuki Shirota, Tsukasa Nakamura, Toshiaki Katayama, Daisuke Kihara, Kengo Kinoshita, Genji Kurisu

    Protein Science 2025/03 Research paper (scientific journal)

  2. Protein Data Bank Japan: Computational resources for analysis of protein structures

    Gert-Jan Bekker, Chioko Nagao, Matsuyuki Shirota, Tsukasa Nakamura, Toshiaki Katayama, Daisuke Kihara, Kengo Kinoshita, Genji Kurisu

    Journal of Molecular Biology 2025/02 Research paper (scientific journal)

  3. Structural dynamics of the Ca2+-regulated cutinase towards structure-based improvement of PET degradation activity

    Nobutaka Numoto, Fumiya Kondo, Gert-Jan Bekker, Zengwei Liao, Mitsuaki Yamashita, Akira Iida, Nobutoshi Ito, Narutoshi Kamiya, Masayuki Oda

    International Journal of Biological Macromolecules Vol. 281 p. 136597-136597 2024/11 Research paper (scientific journal)

    Publisher: Elsevier BV
  4. Molecular Dynamics Unveils Multiple-Site Binding of Inhibitors with Reduced Activity on the Surface of Dihydrofolate Reductase

    Mitsugu Araki, Toru Ekimoto, Kazuhiro Takemura, Shigeyuki Matsumoto, Yunoshin Tamura, Hironori Kokubo, Gert-Jan Bekker, Tsutomu Yamane, Yuta Isaka, Yukari Sagae, Narutoshi Kamiya, Mitsunori Ikeguchi, Yasushi Okuno

    Journal of the American Chemical Society 2024/10/12 Research paper (scientific journal)

    Publisher: American Chemical Society (ACS)
  5. Familial Episodic Pain Syndrome: A Japanese Family Harboring the Novel Variant c.2431C>T (p.Leu811Phe) in SCN11A

    Chioko Nagao, Hiroko Okuda, Gert-Jan Bekker, Atsuko Noguchi, Tsutomu Takahashi, Akio Koizumi, Shohab Youssefian, Tohru Tezuka, Shinji Akioka

    Biochemical Genetics 2024/07/25 Research paper (scientific journal)

  6. Binding Mechanism between Platelet Glycoprotein and Cyclic Peptide Elucidated by McMD-Based Dynamic Docking

    Gert-Jan Bekker, Kanji Oshima, Mitsugu Araki, Yasushi Okuno, Narutoshi Kamiya

    Journal of Chemical Information and Modeling Vol. 64 No. 10 p. 4158-4167 2024/05/16 Research paper (scientific journal)

    Publisher: American Chemical Society (ACS)
  7. Binding Mechanism of Riboswitch to Natural Ligand Elucidated by McMD-Based Dynamic Docking Simulations

    Gert-Jan Bekker, Yoshifumi Fukunishi, Junichi Higo, Narutoshi Kamiya

    ACS Omega 2024/01/10 Research paper (scientific journal)

  8. Enhanced Coarse-Grained Molecular Dynamics Simulation with a Smoothed Hybrid Potential Using a Neural Network Model

    Ryo Kanada, Atsushi Tokuhisa, Yusuke Nagasaka, Shingo Okuno, Koichiro Amemiya, Shuntaro Chiba, Gert-Jan Bekker, Narutoshi Kamiya, Koichiro Kato, Yasushi Okuno

    Journal of Chemical Theory and Computation 2024/01/09 Research paper (scientific journal)

  9. Elucidation of binding mechanism, affinity and complex structure between mWT1 tumor‐associated antigen peptide and HLA‐A*24:02

    Gert‐Jan Bekker, Nobutaka Numoto, Maki Kawasaki, Takahiro Hayashi, Saaya Yabuno, Yuko Kozono, Takeyuki Shimizu, Haruo Kozono, Nobutoshi Ito, Masayuki Oda, Narutoshi Kamiya

    Protein Science 2023/09/04 Research paper (scientific journal)

    Publisher: Wiley
  10. Mutual induced-fit mechanism drives binding between intrinsically disordered Bim and cryptic binding site of Bcl-xL

    Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, Yasushi Okuno, Narutoshi Kamiya

    Communications Biology Vol. 6 No. 1 2023/03/30 Research paper (scientific journal)

    Publisher: Springer Science and Business Media LLC
  11. Binding free-energy landscapes of small molecule binder and non-binder to FMN riboswitch: All-atom molecular dynamics

    Junichi Higo, Gert-Jan Bekker, Narutoshi Kamiya, Ikuo Fukuda, Yoshifumi Fukunishi

    Biophysics and Physicobiology 2023 Research paper (scientific journal)

  12. Thermal Stability Estimation of Single Domain Antibodies Using Molecular Dynamics Simulations

    Gert-Jan Bekker, Narutoshi Kamiya

    Computer-Aided Antibody Design p. 151-163 2023 Part of collection (book)

    Publisher: Springer US
  13. History of Protein Data Bank Japan: standing at the beginning of the age of structural genomics

    Genji Kurisu, Gert-Jan Bekker, Atsushi Nakagawa

    Biophysical Reviews 2022/12/09 Research paper (scientific journal)

    Publisher: Springer Science and Business Media LLC
  14. Advancing the field of computational drug design using multicanonical molecular dynamics-based dynamic docking

    Gert-Jan Bekker, Narutoshi Kamiya

    Biophysical Reviews Vol. 14 No. 6 p. 1349-1358 2022/11/19 Research paper (scientific journal)

    Publisher: Springer Science and Business Media LLC
  15. Fly casting with ligand sliding and orientational selection supporting complex formation of a GPCR and a middle sized flexible molecule

    Junichi Higo, Kota Kasahara, Gert-Jan Bekker, Benson Ma, Shun Sakuraba, Shinji Iida, Narutoshi Kamiya, Ikuo Fukuda, Hidetoshi Kono, Yoshifumi Fukunishi, Haruki Nakamura

    Scientific Reports Vol. 12 No. 1 2022/08/13 Research paper (scientific journal)

    Publisher: Springer Science and Business Media LLC
  16. Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data.

    Gert-Jan Bekker, Masashi Yokochi, Hirofumi Suzuki, Yasuyo Ikegawa, Takeshi Iwata, Takahiro Kudou, Kei Yura, Toshimichi Fujiwara, Takeshi Kawabata, Genji Kurisu

    Protein science : a publication of the Protein Society Vol. 31 No. 1 p. 173-186 2022/01 Research paper (scientific journal)

    Publisher: Wiley
  17. N-Terminal-Driven Binding Mechanism of an Antigen Peptide to Human Leukocyte Antigen-A*2402 Elucidated by Multicanonical Molecular Dynamic-Based Dynamic Docking and Path Sampling Simulations

    Gert-Jan Bekker, Narutoshi Kamiya

    The Journal of Physical Chemistry B 2021/12/03 Research paper (scientific journal)

    Publisher: American Chemical Society (ACS)
  18. Exploring ligand binding pathways on proteins using hypersound-accelerated molecular dynamics

    Mitsugu Araki, Shigeyuki Matsumoto, Gert-Jan Bekker, Yuta Isaka, Yukari Sagae, Narutoshi Kamiya, Yasushi Okuno

    Nature Communications Vol. 12 No. 1 2021/12 Research paper (scientific journal)

    Publisher: Springer Science and Business Media LLC
  19. Cryptic-site binding mechanism of medium-sized Bcl-xL inhibiting compounds elucidated by McMD-based dynamic docking simulations

    Gert-Jan Bekker, Ikuo Fukuda, Junichi Higo, Yoshifumi Fukunishi, Narutoshi Kamiya

    Scientific Reports Vol. 11 No. 1 2021/12 Research paper (scientific journal)

    Publisher: Springer Science and Business Media LLC
  20. Accurate Binding Configuration Prediction of a G-Protein-Coupled Receptor to Its Antagonist Using Multicanonical Molecular Dynamics-Based Dynamic Docking

    Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, Yasushi Okuno, Narutoshi Kamiya

    Journal of Chemical Information and Modeling Vol. 61 No. 10 p. 5161-5171 2021/10/25 Research paper (scientific journal)

    Publisher: American Chemical Society ({ACS})
  21. Structural basis of mutants of PET-degrading enzyme from Saccharomonospora viridis AHK190 with high activity and thermal stability.

    Miho Emori, Nobutaka Numoto, Akane Senga, Gert-Jan Bekker, Narutoshi Kamiya, Yuma Kobayashi, Nobutoshi Ito, Fusako Kawai, Masayuki Oda

    Proteins Vol. 89 No. 5 p. 502-511 2021/05 Research paper (scientific journal)

    Publisher: Wiley
  22. Dynamical Methods to Study Interaction in Proteins Facilitating Molecular Understanding of Cancer

    Bhaskar Dasgupta, Gert-Jan Bekker, Narutoshi Kamiya

    Handbook of Oxidative Stress in Cancer: Mechanistic Aspects p. 1-17 2021

    Publisher: Springer Singapore
  23. Dynamic Docking Using Multicanonical Molecular Dynamics: Simulating Complex Formation at the Atomistic Level

    Gert-Jan Bekker, Narutoshi Kamiya

    Methods in Molecular Biology p. 187-202 2021 Part of collection (book)

    Publisher: Springer US
  24. Cutinases from thermophilic bacteria (actinomycetes): From identification to functional and structural characterization

    Masayuki Oda, Nobutaka Numoto, Gert-Jan Bekker, Narutoshi Kamiya, Fusako Kawai

    Methods in Enzymology p. 159-185 2021 Part of collection (book)

    Publisher: Elsevier
  25. Exhaustive search of the configurational space of heat‐shock protein 90 with its inhibitor by multicanonical molecular dynamics based dynamic docking

    Gert‐Jan Bekker, Mitsugu Araki, Kanji Oshima, Yasushi Okuno, Narutoshi Kamiya

    Journal of Computational Chemistry Vol. 41 No. 17 p. 1606-1615 2020/06/30 Research paper (scientific journal)

    Publisher: Wiley
  26. The Biological Structure Model Archive (BSM-Arc): an archive for in silico models and simulations

    Gert-Jan Bekker, Takeshi Kawabata, Genji Kurisu

    Biophysical Reviews Vol. 12 No. 2 p. 371-375 2020/04/05 Research paper (scientific journal)

    Publisher: Springer Science and Business Media {LLC}
  27. Mutual population-shift driven antibody-peptide binding elucidated by molecular dynamics simulations

    Gert-Jan Bekker, Ikuo Fukuda, Junichi Higo, Narutoshi Kamiya

    Scientific Reports Vol. 10 No. 1 2020/01/29 Research paper (scientific journal)

    Publisher: Springer Science and Business Media {LLC}
  28. PDBx/mmCIF Format Mandatory for Protein Data Bank Deposition

    Gert-Jan Bekker

    Nihon Kessho Gakkaishi Vol. 61 No. 3 p. 159-160 2019/08/31 Research paper (scientific journal)

    Publisher: The Crystallographic Society of Japan
  29. Dynamic Docking of a Medium-Sized Molecule to Its Receptor by Multicanonical MD Simulations

    Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, Yasushi Okuno, Narutoshi Kamiya

    The Journal of Physical Chemistry B 2019/03/21 Research paper (scientific journal)

    Publisher: American Chemical Society ({ACS})
  30. Metal binding to cutinase-like enzyme from Saccharomonospora viridis AHK190 and its effects on enzyme activity and stability

    Akane Senga, Yoshiji Hantani, Gert-Jan Bekker, Narutoshi Kamiya, Yuki Kimura, Fusako Kawai, Masayuki Oda

    The Journal of Biochemistry 2019/03/02 Research paper (scientific journal)

    Publisher: Oxford University Press ({OUP})
  31. Protein Data Bank: the single global archive for 3D macromolecular structure data

    wwPDB consortium

    Nucleic Acids Research Vol. 47 No. D1 p. D520-D528 2018/10 Research paper (scientific journal)

    Publisher: Oxford University Press ({OUP})
  32. Structural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca2+-Driven Catalytic Cycle

    Nobutaka Numoto, Narutoshi Kamiya, Gert-Jan Bekker, Yuri Yamagami, Satomi Inaba, Kentaro Ishii, Susumu Uchiyama, Fusako Kawai, Nobutoshi Ito, Masayuki Oda

    Biochemistry Vol. 57 No. 36 p. 5289-5300 2018/09/11 Research paper (scientific journal)

    Publisher: American Chemical Society ({ACS})
  33. Folding thermodynamics of PET-hydrolyzing enzyme Cut190 depending on Ca2+ concentration

    Satomi Inaba, Narutoshi Kamiya, Gert-Jan Bekker, Fusako Kawai, Masayuki Oda

    Journal of Thermal Analysis and Calorimetry Vol. 135 No. 5 p. 2655-2663 2018/06/04 Research paper (scientific journal)

    Publisher: Springer Nature
  34. Structural and thermodynamic characterization of endo-1,3-β-glucanase: Insights into the substrate recognition mechanism

    Masayuki Oda, Satomi Inaba, Narutoshi Kamiya, Gert-Jan Bekker, Bunzo Mikami

    Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics Vol. 1866 No. 3 p. 415-425 2018/03 Research paper (scientific journal)

    Publisher: Elsevier {BV}
  35. Thermal stability of single-domain antibodies estimated by molecular dynamics simulations

    Gert-Jan Bekker, Benson Ma, Narutoshi Kamiya

    Protein Science Vol. 28 No. 2 p. 429-438 2018 Research paper (scientific journal)

    Publisher: Wiley
  36. New tools and functions in data-out activities at Protein Data Bank Japan (PDBj)

    Akira R. Kinjo, Gert-Jan Bekker, Hiroshi Wako, Shigeru Endo, Yuko Tsuchiya, Hiromu Sato, Hafumi Nishi, Kengo Kinoshita, Hirofumi Suzuki, Takeshi Kawabata, Masashi Yokochi, Takeshi Iwata, Naohiro Kobayashi, Toshimichi Fujiwara, Genji Kurisu, Haruki Nakamura

    Protein Science Vol. 27 No. 1 p. 95-102 2017/09 Research paper (scientific journal)

    Publisher: Wiley
  37. Accurate Prediction of Complex Structure and Affinity for a Flexible Protein Receptor and Its Inhibitor

    Gert-Jan Bekker, Narutoshi Kamiya, Mitsugu Araki, Ikuo Fukuda, Yasushi Okuno, Haruki Nakamura

    Journal of Chemical Theory and Computation Vol. 13 No. 6 p. 2389-2399 2017/05 Research paper (scientific journal)

    Publisher: American Chemical Society ({ACS})
  38. Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures

    Akira R. Kinjo, Gert-Jan Bekker, Hirofumi Suzuki, Yuko Tsuchiya, Takeshi Kawabata, Yasuyo Ikegawa, Haruki Nakamura

    Nucleic Acids Research Vol. 45 No. D1 p. D282-D288 2016/10 Research paper (scientific journal)

    Publisher: Oxford University Press ({OUP})
  39. Molmil: a molecular viewer for the PDB and beyond

    Gert-Jan Bekker, Haruki Nakamura, Akira R. Kinjo

    Journal of Cheminformatics Vol. 8 No. 1 2016/08 Research paper (scientific journal)

    Publisher: Springer Nature

Misc. 32

  1. Structural and functional analysis of E. coli phosphoenolpyruvate carboxylase mutant

    三宅智哉, 西村和樹, 松田佳央理, 藤田純三, 藤田純三, 藤田純三, 難波啓一, 難波啓一, 徳山健斗, 戸谷吉博, 清水浩, 栗栖源嗣, GERT-JAN Bekker, 上原了, 松村浩由

    日本分子生物学会年会プログラム・要旨集(Web) Vol. 46th 2023

  2. PDBj tools and services for analyzing, editing and registering structural data.

    BEKKER Gert-Jan

    日本蛋白質科学会年会プログラム・要旨集 Vol. 21st 2021

  3. PDBj tools and services for analyzing and visualizing structural data.

    BEKKER Gert-Jan

    生物物理(Web) Vol. 61 No. Supplement 1-2 2021

  4. Extension of wwPDB core archive with RDF graph data model

    横地政志, BEKKER Gert-Jan, 栗栖源嗣

    日本分子生物学会年会プログラム・要旨集(Web) Vol. 44th 2021

  5. Flexible Docking between Enzyme and Its Inhibitor Using Multicanonical MD Simulations and Binding Free Energy Calculations

    Narutoshi Kamiya, Gert-Jan Bekker

    BIOPHYSICAL JOURNAL Vol. 118 No. 3 p. 361A-361A 2020/02 Research paper, summary (international conference)

  6. The Biological Structure Model Archive (BSM-Arc): an archive for in silico models and simulations

    Bekker Gert-Jan, Kawabata Takeshi, Kurisu Genji

    Biophysical Reviews Vol. 12 No. 2 2020

  7. DYNAMIC DOCKING BETWEEN AN ENZYME AND ITS INHIBITOR USING MULTICANONICAL MD SIMULATIONS

    Narutoshi Kamiya, Gert-Jan Bekker

    PROTEIN SCIENCE Vol. 28 p. 157-157 2019/09 Research paper, summary (international conference)

  8. Thermal Stability of Single-Domain-Antibodies Estimated by MD Simulations

    Narutoshi Kamiya, Benson Ma, Gert-Jan Bekker

    BIOPHYSICAL JOURNAL Vol. 116 No. 3 p. 59A-59A 2019/02 Research paper, summary (international conference)

  9. Dynamic docking between enzyme and its inhibitor using multicanonical MD

    BEKKER Gert-Jan, KAMIYA Narutoshi

    日本細胞生物学会大会(Web) Vol. 71st 2019

  10. Dynamic docking between a flexible enzyme and its inhibitor using multicanonical MD simulations and binding free energy calculations

    KAMIYA Narutoshi, BEKKER Gert-Jan

    生物物理(Web) Vol. 59 No. Supplement 1-2 2019

  11. Biological Structure Model Archive: An archive for computationally obtained data

    BEKKER Gert-Jan, KAWABATA Takeshi, KURISU Genji

    生物物理(Web) Vol. 59 No. Supplement 1-2 2019

  12. New tools for editing and annotating structural data

    BEKKER Gert-Jan

    生物物理(Web) Vol. 59 No. Supplement 1-2 2019

  13. Editing PDBx/mmCIF files via a web-based CIF editor

    BEKKER Gert-Jan

    日本結晶学会年会講演要旨集 Vol. 2019 2019

  14. Stability of Single Domain Antibodies Estimated by Molecular Dynamics Simulation

    Narutoshi Kamiya, Benson Ma, Gert-Jan Bekker

    PROTEIN SCIENCE Vol. 27 p. 194-195 2018/11 Research paper, summary (international conference)

  15. PET分解活性を有する酵素クチナーゼの基質結合型構造

    沼本修孝, 神谷成敏, 神谷成敏, BEKKER Gert-Jan, 山上由莉, 稲葉理美, 稲葉理美, 河合富佐子, 織田昌幸, 伊藤暢聡

    日本結晶学会年会講演要旨集 Vol. 2018 2018

  16. Estimation of Single Domain Antibody Stability by MD Simulations

    BEKKER Gert-Jan, MA Benson, KAMIYA Narutoshi

    生物物理(Web) Vol. 58 No. Supplement 1-2 2018

  17. Advanced search and visualization tools for the PDB by Protein Data Bank Japan

    BEKKER Gert-Jan, KINJO Akira, NAKAMURA Haruki, KURISU Genji

    日本蛋白質科学会年会プログラム・要旨集 Vol. 18th 2018

  18. Substrate-binding model of endo-1,3-β-glucanase and its binding thermodynamics

    織田昌幸, 稲葉理美, 稲葉理美, BEKKER Gert-Jan, 神谷成敏, 神谷成敏

    熱測定討論会講演要旨集 Vol. 53rd 2017

  19. Molmil: A versatile WebGL based molecular viewer

    BEKKER Gert-Jan

    日本蛋白質科学会年会プログラム・要旨集 Vol. 17th 2017

  20. Flexible docking between cyclin-dependent kinase 2 and its inhibitor CS3 using multicanonical MD and thermodynamic integration simulations

    BEKKER Gert-Jan, KAMIYA Narutoshi, KAMIYA Narutoshi, ARAKI Mitsugu, FUKUDA Ikuo, OKUNO Yasushi, NAKAMURA Haruki

    日本蛋白質科学会年会プログラム・要旨集 Vol. 17th 2017

  21. Flexible docking and affinity calculation between CDK2 and its inhibitor CS3 using multicanonical MD and thermodynamic integration

    BEKKER Gert-Jan, KAMIYA Narutoshi, ARAKI Mitsugu, FUKUDA Ikuo, OKUNO Yasushi, NAKAMURA Haruki

    生物物理(Web) Vol. 57 No. Supplement 1-2 2017

  22. Play with 3D structure data of biomolecules - PDBj

    Hirofumi Suzuki, Gert-Jan Bekker, Takahiro Kudo, Akira R. Kinjo, Kengo Kinoshita, Genji Kurisu, Haruki Nakamura

    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES Vol. 73 p. C579-C579 2017 Research paper, summary (international conference)

  23. Searching and viewing hybrid structure data

    Hirofumi Suzuki, Gert-Jan Bekker, Takeshi Kawabata, Genji Kurisu, Haruki Nakamura

    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES Vol. 73 p. C974-C974 2017 Research paper, summary (international conference)

  24. An efficient new methodology for path elucidation and binding free energy calculation

    BEKKER Gert-Jan, KAMIYA Narutoshi, NAKAMURA Haruki

    日本蛋白質科学会年会プログラム・要旨集 Vol. 16th 2016

  25. Web based services for multiscale structure data in EMDB, PDB and SASBDB

    SUZUKI Hirofumi, SUZUKI Hirofumi, KAWABATA Takeshi, BEKKER Gert-Jan, BEKKER Gert-Jan, NAKAMURA Haruki, NAKAMURA Haruki

    生物物理(Web) Vol. 56 No. Supplement 1-2 2016

  26. Flexible docking simulation between cyclin-dependent kinase 2 and its inhibitor using multicanonical MD method

    KAMIYA Narutoshi, BEKKER Gert-Jan, ARAKI Mitsugu, OKUNO Yasushi

    日本蛋白質科学会年会プログラム・要旨集 Vol. 16th 2016

  27. Flexible docking between cyclin-dependent kinase 2 and its inhibitor using multicanonical MD

    BEKKER Gert-Jan, KAMIYA Narutoshi, ARAKI Mitsugu, OKUNO Yasushi, NAKAMURA Haruki

    生物物理(Web) Vol. 56 No. Supplement 1-2 2016

  28. In-vitro and in-silico studies of ligand binding to the nuclear receptor PPARgamma using FRET and MD

    Narutoshi Kamiya, Gert-Jan Bekker, Takuma Shiraki, Haruki Nakamura

    PROTEIN SCIENCE Vol. 24 p. 151-151 2015/10 Research paper, summary (international conference)

  29. Experimental and theoretical studies of ligand binding to the nuclear receptor, PPAR γ using FRET and RAMD

    KAMIYA Narutoshi, BEKKER Gert-Jan, SHIRAKI Takuma, NAKAMURA Haruki

    日本蛋白質科学会年会プログラム・要旨集 Vol. 15th 2015

  30. A novel method to determine the optimal unbinding path between receptor and ligand using advanced molecular dynamics simulations

    BEKKER Gert-Jan, KAMIYA Narutoshi, NAKAMURA Haruki

    生物物理(Web) Vol. 55 No. Supplement 1-2 2015

  31. Accurate ensemble modeling of CDR-H3 loop in antibody

    NISHIGAMI Hiroshi, BEKKER Gert-Jan, KAMIYA Narutoshi, HIGO Junichi, NAKAMURA Haruki

    生物物理(Web) Vol. 55 No. Supplement 1-2 2015

  32. The new PDBj web Interface: Customizable, Modern and User-friendly

    BEKKER Gert-Jan

    生物物理 Vol. 53 No. Supplement 1-2 (Web) 2013

Publications 2

  1. バイオDBとウェブツール : ラボで使える最新70選 : 知る・学ぶ・使う、バイオDX時代の羅針盤

    小野, 浩雅

    羊土社 2022/11

    ISBN: 9784758104067

  2. どうして心臓は動き続けるの? : 生命をささえるタンパク質のなぞにせまる

    大阪大学蛋白質研究所

    化学同人 2018/11

    ISBN: 9784759819816

Institutional Repository 1

Content Published in the University of Osaka Institutional Repository (OUKA)
  1. Protein Data Bank Japan: Improved tools for sequence‐oriented analysis of protein structures

    Bekker Gert-Jan, Nagao Chioko, Shirota Matsuyuki, Nakamura Tsukasa, Katayama Toshiaki, Kihara Daisuke, Kinoshita Kengo, Kurisu Genji

    Protein Science Vol. 34 No. 3 2025/03/01