顔写真

PHOTO

Gotou Naohisa
後藤　直久
Gotou Naohisa
後藤　直久
Institutional repository
Research Institute for Microbial Diseases, Associate Professor (Lecturer)

keyword Bioinformatics

Institutional repository

Research History 3

  1. 2016/04 - Present
    Osaka University　Research Institute for Microbial Diseases　Lecturer, Associate Professor

  2. 2008/01 - 2016/03
    Osaka University　Research Institute for Microbial Diseases　Assistant Professor

  3. 2005/04 - 2007/12
    Osaka University　Research Institute for Microbial Diseases　S.A. Researcher

Education 4

  1. Osaka University　Graduate School of Science　Department of Biological Sciences

    2007/12 - 2007/12

  2. Osaka University　Graduate School of Science　Department of Biological Sciences

    2001/04 - 2005/03

  3. Osaka University　Graduate School of Science　Department of Biological Sciences

    1999/04 - 2001/03

  4. Osaka University　School of Science　Department of Biology

    1995/04 - 1999/03

Professional Memberships 4

  1. 日本遺伝学会

  2. 日本進化学会

  3. 日本分子生物学会

  4. 日本バイオインフォマティクス学会

Research Areas 2

  1. Life sciences / Biophysics /

  2. Life sciences / Genetics /

Papers 27

  1. BioHackathon 2015: Semantics of data for life sciences and reproducible research

    Toshiaki Katayama, Rutger A. Vos, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan Bolton, Raoul J.P. Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin B. Cohen, Eric W. Deutsch, Jesualdo T. Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick Juty, Takeshi Kawashima, Jee Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy Nguyen-Xuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih Hsuan Wei, Mark Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi

    F1000Research　Vol. 9　p. 136-136　2020　Research paper (scientific journal)

    Publisher: F1000 Research Ltd

  2. A new approach to identifying hypertension-associated genes in the mesenteric artery of spontaneously hypertensive rats and stroke-prone spontaneously hypertensive rats

    Takashi Ikawa, Yuko Watanabe, Daisuke Okuzaki, Naohisa Goto, Nobutaka Okamura, Kyosuke Yamanishi, Toshihide Higashino, Hiromichi Yamanishi, Haruki Okamura, Hideaki Higashino

    Journal of Hypertension　Vol. 37　No. 8　p. 1644-1656　2019/08/01　Research paper (scientific journal)

    Publisher: Ovid Technologies (Wolters Kluwer Health)

  3. Sharing programming resources between bio* projects

    Raoul J.P. Bonnal, Andrew Yates, Naohisa Goto, Laurent Gautier, Scooter Willis, Christopher Fields, Toshiaki Katayama, Pjotr Prins

    Methods in Molecular Biology　Vol. 1910　p. 747-766　2019　Part of collection (book)

    Publisher: Springer New York

  4. Fungal ITS1 deep-sequencing strategies to reconstruct the composition of a 26-species community and evaluation of the gut mycobiota of healthy Japanese individuals

    Daisuke Motooka, Kosuke Fujimoto, Reiko Tanaka, Takashi Yaguchi, Kazuyoshi Gotoh, Yuichi Maeda, Yoki Furuta, Takashi Kurakawa, Naohisa Goto, Teruo Yasunaga, Masashi Narazaki, Atsushi Kumanogoh, Toshihiro Horii, Tetsuya Iida, Kiyoshi Takeda, Shota Nakamura

    Frontiers in Microbiology　Vol. 8　No. FEB　2017/02/15　Research paper (scientific journal)

  5. Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes

    Mari Miyamoto, Daisuke Motooka, Kazuyoshi Gotoh, Takamasa Imai, Kazutoshi Yoshitake, Naohisa Goto, Tetsuya Iida, Teruo Yasunaga, Toshihiro Horii, Kazuharu Arakawa, Masahiro Kasahara, Shota Nakamura

    BMC Genomics　Vol. 15　No. 1　2014/08/21　Research paper (scientific journal)

  6. Genetic analysis of genes causing hypertension and stroke in spontaneously hypertensive rats

    Hideyuki Yamamoto, Daisuke Okuzaki, Kyosuke Yamanishi, Yunfeng Xu, Yuko Watanabe, Momoko Yoshida, Akifumi Yamashita, Naohisa Goto, Seiji Nishiguchi, Kazunori Shimada, Hiroshi Nojima, Teruo Yasunaga, Haruki Okamura, Hisato Matsunaga, Hiromichi Yamanishi

    International Journal of Molecular Medicine　Vol. 31　No. 5　p. 1057-1065　2013/05　Research paper (scientific journal)

    Publisher: Spandidos Publications

  7. 医薬学データ用統計解析プログラム、MEPHASの更新について(その3)

    福井 大介, 田 雨時, 岡本 晃典, 川下 理日人, 後藤 直久, 安永 照雄, 高木 達也

    日本薬学会年会要旨集　Vol. 133年会　No. 2　p. 323-323　2013/03

    Publisher: (公社)日本薬学会

  8. The 3rd DBCLS BioHackathon: Improving life science data integration with Semantic Web technologies

    Toshiaki Katayama, Mark D. Wilkinson, Gos Micklem, Shuichi Kawashima, Atsuko Yamaguchi, Mitsuteru Nakao, Yasunori Yamamoto, Shinobu Okamoto, Kenta Oouchida, Hong Woo Chun, Jan Aerts, Hammad Afzal, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Francois Belleau, Jerven Bolleman, Raoul J.P. Bonnal, Brad Chapman, Peter J.A. Cock, Tore Eriksson, Paul M.K. Gordon, Naohisa Goto, Kazuhiro Hayashi, Heiko Horn, Ryosuke Ishiwata, Eli Kaminuma, Arek Kasprzyk, Hideya Kawaji, Nobuhiro Kido, Young Joo Kim, Akira R. Kinjo, Fumikazu Konishi, Kyung Hoon Kwon, Alberto Labarga, Anna Lena Lamprecht, Yu Lin, Pierre Lindenbaum, Luke McCarthy, Hideyuki Morita, Katsuhiko Murakami, Koji Nagao, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Keiichiro Ono, Kazuki Oshita, Keun Joon Park, Pjotr Prins, Taro L. Saito, Matthias Samwald, Venkata P. Satagopam, Yasumasa Shigemoto, Richard Smith, Andrea Splendiani, Hideaki Sugawara, James Taylor, Rutger A. Vos, David Withers, Chisato Yamasaki, Christian M. Zmasek, Shoko Kawamoto, Kosaku Okubo, Kiyoshi Asai, Toshihisa Takagi

    Journal of Biomedical Semantics　Vol. 4　No. 1　2013/02/11

    Publisher: BioMed Central Ltd.

  9. Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade

    Shin Ichiro Tachibana, Steven A. Sullivan, Satoru Kawai, Shota Nakamura, Hyunjae R. Kim, Naohisa Goto, Nobuko Arisue, Nirianne M.Q. Palacpac, Hajime Honma, Masanori Yagi, Takahiro Tougan, Yuko Katakai, Osamu Kaneko, Toshihiro Mita, Kiyoshi Kita, Yasuhiro Yasutomi, Patrick L. Sutton, Rimma Shakhbatyan, Toshihiro Horii, Teruo Yasunaga, John W. Barnwell, Ananias A. Escalante, Jane M. Carlton, Kazuyuki Tanabe

    Nature Genetics　Vol. 44　No. 9　p. 1051-1055　2012/09　Research paper (scientific journal)

  10. Biogem: An effective tool-based approach for scaling up open source software development in bioinformatics

    Raoul J.P. Bonnal, Jan Aerts, George Githinji, Naohisa Goto, Dan Maclean, Chase A. Miller, Hiroyuki Mishima, Massimiliano Pagani, Ricardo Ramirez-gonzalez, Geert Smant, Francesco Strozzi, Rob Syme, Rutger Vos, Trevor J. Wennblom, Ben J. Woodcroft, Toshiaki Katayama, Pjotr Prins

    Bioinformatics　Vol. 28　No. 7　p. 1035-1037　2012/04　Research paper (scientific journal)

    Publisher: Oxford University Press (OUP)

  11. A comprehensive analysis of reassortment in influenza A virus

    U. Chandimal De Silva, Hokuto Tanaka, Shota Nakamura, Naohisa Goto, Teruo Yasunaga

    Biology Open　Vol. 1　No. 4　p. 385-390　2012/04　Research paper (scientific journal)

  12. 医薬学データ用統計解析プログラム、MEPHASの更新について(その2)

    福井 大介, 田 雨時, 岡本 晃典, 川下 理日人, 後藤 直久, 安永 照雄, 高木 達也

    日本薬学会年会要旨集　Vol. 132年会　No. 4　p. 161-161　2012/03

    Publisher: (公社)日本薬学会

  13. Sharing programming resources between bio* projects through remote procedure call and native call stack strategies

    Pjotr Prins, Naohisa Goto, Andrew Yates, Laurent Gautier, Scooter Willis, Christopher Fields, Toshiaki Katayama

    Methods in Molecular Biology　Vol. 856　p. 513-527　2012　Research paper (scientific journal)

  14. The 2nd DBCLS BioHackathon: Interoperable bioinformatics Web services for integrated applications

    Toshiaki Katayama, Mark D. Wilkinson, Rutger Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul J.P. Bonnal, José M. Fernández, Takatomo Fujisawa, Paul M.K. Gordon, Naohisa Goto, Syed Haider, Todd Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young Joo Kim, Akira R. Kinjo, Fumikazu Konishi, Yulia Kovarskaya, Greg von Kuster, Alberto Labarga, Vachiranee Limviphuvadh, Luke McCarthy, Yasukazu Nakamura, Yunsun Nam, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Tom Oinn, Shinobu Okamoto, Shujiro Okuda, Keiichiro Ono, Kazuki Oshita, Keun Joon Park, Nicholas Putnam, Martin Senger, Jessica Severin, Yasumasa Shigemoto, Hideaki Sugawara, James Taylor, Oswaldo Trelles, Chisato Yamasaki, Riu Yamashita, Noriyuki Satoh, Toshihisa Takagi

    Journal of Biomedical Semantics　Vol. 2　No. 1　p. 4-4　2011/08/02　Research paper (scientific journal)

  15. 医薬学データ用統計解析プログラム、MEPHASの更新について

    福井 大介, 田 雨時, 岡本 晃典, 川下 理日人, 後藤 直久, 安永 照雄, 高木 達也

    日本薬学会年会要旨集　Vol. 131年会　No. 4　p. 127-127　2011/03

    Publisher: (公社)日本薬学会

  16. BioRuby: Bioinformatics software for the Ruby programming language

    Naohisa Goto, Pjotr Prins, Mitsuteru Nakao, Raoul Bonnal, Jan Aerts, Toshiaki Katayama

    Bioinformatics　Vol. 26　No. 20　p. 2617-2619　2010/08/25　Research paper (scientific journal)

  17. The DBCLS BioHackathon: Standardization and interoperability for bioinformatics web services and workflows

    Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul J.P. Bonnal, Richard Bruskiewich, Jan C. Bryne, José M. Fernández, Akira Funahashi, Paul M.K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehvaslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwinski, Mark Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi

    Journal of Biomedical Semantics　Vol. 1　No. 1　p. 1-19　2010/08/21

    Publisher: BioMed Central Ltd.

  18. The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

    Peter J.A. Cock, Christopher J. Fields, Naohisa Goto, Michael L. Heuer, Peter M. Rice

    Nucleic Acids Research　Vol. 38　No. 6　p. 1767-1771　2009/12/16　Research paper (scientific journal)

  19. Identification and characterization of a novel type III secretion system in trh-positive vibrio parahaemolyticus strain TH3996 reveal genetic lineage and diversity of pathogenic machinery beyond the species level

    Natsumi Okada, Tetsuya Iida, Kwon Sam Park, Naohisa Goto, Teruo Yasunaga, Hirotaka Hiyoshi, Shigeaki Matsuda, Toshio Kodama, Takeshi Honda

    Infection and Immunity　Vol. 77　No. 2　p. 904-913　2009/02　Research paper (scientific journal)

  20. Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach

    Shota Nakamura, Cheng Song Yang, Naomi Sakon, Mayo Ueda, Takahiro Tougan, Akifumi Yamashita, Naohisa Goto, Kazuo Takahashi, Teruo Yasunaga, Kazuyoshi Ikuta, Tetsuya Mizutani, Yoshiko Okamoto, Michihira Tagami, Ryoji Morita, Norihiro Maeda, Jun Kawai, Yoshihide Hayashizaki, Yoshiyuki Nagai, Toshihiro Horii, Tetsuya Iida, Takaaki Nakaya

    PLoS ONE　Vol. 4　No. 1　2009/01/19　Research paper (scientific journal)

  21. Inhibition of influenza virus infection by targeting genome conserved region with non-natural nucleic acid.

    Tomoya Takahashi, Takuya Ohzawa, Shinjiro Sawada, Nobuo Kato, Naohisa Goto, Shota Nakamura, Teruo Yasunaga, Kunihiro Kaihatsu

    Nucleic acids symposium series (2004)　Vol. 53　No. 53　p. 285-286　2009　Research paper (scientific journal)

    Publisher: Oxford University Press (OUP)

  22. Computational search for over-represented 8-mers within the 5′-regulatory regions of 634 mouse testis-specific genes

    Akifumi Yamashita, Naohisa Goto, Seiji Nishiguchi, Kazunori Shimada, Hiromichi Yamanishi, Teruo Yasunaga

    Gene　Vol. 427　No. 1-2　p. 93-98　2008/12/31　Research paper (scientific journal)

  23. Computational studies of gp41 6-helix bundle: Do stabilized energy of HIV membrane fusion inhibitor C34 and interaction energy of gp41 6-helix bundle have good correlation with their inhibitory activity?

    Kawashita Norihito, Tian Yu-Shi, Yasuda Masashi, de Silva, U. Chandimal, Kashiwada Rie, Nakamura Shota, Goto Naohisa, Nishikiori Rika, Okamoto Kousuke, Kameoka Masanori, Yasunaga Teruo, Kawase Masaya, Ikuta Kazuyoshi, Takagi Tatsuya

    ANTIVIRAL RESEARCH　Vol. 78　No. 2　2008/05

  24. The 2006 NESCent phyloinformatics hackathon: A field report

    Hilmar Lapp, Sendu Bala, James P. Balhoff, Amy Bouck, Naohisa Goto, Mark Holder, Richard Holland, Alisha Holloway, Toshiaki Katayama, Paul O. Lewis, Aaron J. Mackey, Brian I. Osborne, William H. Piel, Sergei L.Kosakovsky Pond, Art F.Y. Poon, Wei Gang Qiu, Jason E. Stajich, Arlin Stoltzfus, Tobias Thierer, Albert J. Vilella, Rutger A. Vos, Christian M. Zmasek, Derrick J. Zwickl, Todd J. Vision

    Evolutionary Bioinformatics　Vol. 3　p. 287-296　2007/12/14　Research paper (scientific journal)

  25. Analysis of invariant sequences in 266 complete genomes

    Naohisa Goto, Ken Kurokawa, Teruo Yasunaga

    Gene　Vol. 401　No. 1-2　p. 172-180　2007/10/15　Research paper (scientific journal)

  26. Evolution of interleukin-18 binding proteins and interleukin-1 receptor, type II proteins.

    Makoto Watanabe, Naohisa Goto, Yuko Watanabe, Seiji Nishiguchi, Kazunori Shimada, Teruo Yasunga, Hiromichi Yamanishi

    International journal of molecular medicine　Vol. 15　No. 4　p. 561-566　2005/04　Research paper (scientific journal)

    Publisher: Spandidos Publications

  27. BioRuby: Open-Source Bioinformatics Library

    Goto Naohisa, Nakao Mitsuteru, Kawashima Shiuichi, Katayama Toshiaki, Kanehisa Minoru

    GI　Vol. 14　p. 629-630　2003

    Publisher: Japanese Society for Bioinformatics

Misc. 3

  1. BioHackathon series in 2011 and 2012: Penetration of ontology and linked data in life science domains

    Toshiaki Katayama, Mark D. Wilkinson, Kiyoko F. Aoki-Kinoshita, Shuichi Kawashima, Yasunori Yamamoto, Atsuko Yamaguchi, Shinobu Okamoto, Shin Kawano, Jin Dong Kim, Yue Wang, Hongyan Wu, Yoshinobu Kano, Hiromasa Ono, Hidemasa Bono, Simon Kocbek, Jan Aerts, Yukie Akune, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Joachim Baran, Jerven Bolleman, Raoul J.P. Bonnal, Pier Luigi Buttigieg, Matthew P. Campbell, Yi An Chen, Hirokazu Chiba, Peter J.A. Cock, K. Bretonnel Cohen, Alexandru Constantin, Geraint Duck, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Naohisa Goto, Robert Hoehndorf, Yoshinobu Igarashi, Hidetoshi Itaya, Maori Ito, Wataru Iwasaki, Matúš Kalaš, Takeo Katoda, Taehong Kim, Anna Kokubu, Yusuke Komiyama, Masaaki Kotera, Camille Laibe, Hilmar Lapp, Thomas Lütteke, M. Scott Marshall, Takaaki Mori, Hiroshi Mori, Mizuki Morita, Katsuhiko Murakami, Mitsuteru Nakao, Hisashi Narimatsu, Hiroyo Nishide, Yosuke Nishimura, Johan Nystrom-Persson, Soichi Ogishima, Yasunobu Okamura, Shujiro Okuda, Kazuki Oshita, Nicki H. Packer, Pjotr Prins, Rene Ranzinger, Philippe Rocca-Serra, Susanna Sansone, Hiromichi Sawaki, Sung Ho Shin, Andrea Splendiani, Francesco Strozzi, Shu Tadaka, Philip Toukach, Ikuo Uchiyama, Masahito Umezaki, Rutger Vos, Patricia L. Whetzel, Issaku Yamada, Chisato Yamasaki, Riu Yamashita, William S. York, Christian M. Zmasek, Shoko Kawamoto, Toshihisa Takagi

    Journal of Biomedical Semantics　Vol. 5　No. 1　2014　Book review, literature introduction, etc.

  2. HIV gp41の蛋白質間相互作用計算によるアミノ酸残基と膜融合阻害活性との相関

    川下 理日人, 田 雨時, 中村 昇太, 岡本 晃典, 後藤 直久, de Silva, U. Chandimal, 亀岡 正典, 川瀬 雅也, 安永 照雄, 生田 和良, 高木 達也

    日本エイズ学会誌　Vol. 9　No. 4　p. 405-405　2007/11

    Publisher: 日本エイズ学会

  3. Computational alanine scanning for the 6-helix bundle model between HIV-1 gp41 N-terminal heptad repeat and membrane fusion inhibitor C34

    TIAN Yu-Shi, KAWASHITA Norihito, KAWASHITA Norihito, YASUDA Masashi, KAWAGUCHI Akiko, YAMASHITA Noriyuki, DE SILVA U. Chandimal, NAKAMURA Shota, OKAMOTO Kousuke, GOTO Naohisa, NISHIKIORI Rika, KAMEOKA Masanori, KAMEOKA Masanori, KAWASE Masaya, KAWASE Masaya, YASUNAGA Teruo, YASUNAGA Teruo, IKUTA Kazuyoshi, IKUTA Kazuyoshi, TAKAGI Tatsuya, TAKAGI Tatsuya

    情報計算化学生物学会大会予稿集　Vol. 2007　2007

Presentations 4

  1. バイオインフォマティクスセンターの計算機システムの概要と利用方法

    後藤 直久

    OUバイオインフォマティクスセンターセミナー　2023/09

  2. Development and maintenance of BioRuby in preparation for next major release

    後藤 直久

    2022年日本バイオインフォマティクス学会年会・第11回生命医薬情報学連合大会（IIBMP2022）　2022/09

  3. BioRuby の最近の更新状況について

    後藤 直久

    第26回オープンバイオ研究会　2022/03

  4. BioRubyのパッケージング

    後藤 直久

    Bio"Pack"athon 2022 #1　2022/01

Media Coverage 1

  1. まちのラジオ 大阪大学社学連携事業

    みのおFM

    2018/01

Institutional Repository 1

Content Published in the University of Osaka Institutional Repository (OUKA)

  1. Analysis of invariant sequences among 266 complete genomes

    後藤 直久