顔写真

PHOTO

Tetsuro Hirose
廣瀬 哲郎
Tetsuro Hirose
廣瀬 哲郎
Graduate School of Frontier Biosciences Department of Frontier Biosciences,Professor

Research History 8

  1. 2020/04 - Present
    Osaka University Graduate School of Frontier Biosciences Professor

  2. 2013/09 - 2020/10
    Hokkaido University Institute for Genetic Medicine

  3. 2013/04 - 2013/08
    産業技術総合研究所 バイオメディカル研究部門 研究グループ長

  4. 2005/09 - 2013/03
    産業技術総合研究所 生物情報解析研究センター/バイオメディシナル情報研究センター 研究チーム長

  5. 2004/04 - 2005/09
    科学技術振興機構 さきがけ専任研究員

  6. 2004/01 - 2004/03
    東京医科歯科大学 疾患生命研究部 特任准教授

  7. 1999/09 - 2003/12
    イェール大学 医学部/HHMI ポストドクトラルフェロー

  8. 1995/07 - 1999/08
    Nagoya University Center for Gene Research

Professional Memberships 4

  1. The RNA Society

  2. JAPAN SOCIETY FOR CELL BIOLOGY

  3. THE RNA SOCIETY OF JAPAN

  4. THE MOLECULAR BIOLOGY SOCIETY OF JAPAN

Research Areas 2

  1. Life sciences / Cell biology /

  2. Life sciences / Molecular biology /

Papers 133

  1. Architectural RNAs: blueprints for functional membraneless organelle assembly

    Tetsuro Hirose, Naoko Fujiwara, Kensuke Ninomiya, Tetsuya Yamamoto, Shinichi Nakagawa, Tomohiro Yamazaki

    Trends in Genetics 2025/06 Research paper (scientific journal)

  2. Involvement of lncRNA MIR205HG in idiopathic pulmonary fibrosis and IL-33 regulation via Alu elements

    Tsuyoshi Takashima, Chao Zeng, Eitaro Murakami, Naoko Fujiwara, Masaharu Kohara, Hideki Nagata, Zhaozu Feng, Ayako Sugai, Yasue Harada, Rika Ichijo, Daisuke Okuzaki, Satoshi Nojima, Takahiro Matsui, Yasushi Shintani, Gota Kawai, Michiaki Hamada, Tetsuro Hirose, Kazuhiko Nakatani, Eiichi Morii

    JCI Insight Vol. 10 No. 5 2025/03/10 Research paper (scientific journal)

    Publisher: American Society for Clinical Investigation
  3. Blocky proline/glutamine patterns in the SFPQ intrinsically disordered region dictate paraspeckle formation as a distinct membraneless organelle

    Hiro Takakuwa, Takao Yoda, Tomohiro Yamazaki, Tetsuro Hirose

    2025/02/27

  4. Biophysical aspect of assembly and regulation of nuclear bodies scaffolded by architectural RNA

    Tetsuya Yamamoto, Tomohiro Yamazaki, Kensuke Ninomiya, Shinichi Nakagawa, Tetsuro Hirose

    Journal of Molecular Biology p. 169016-169016 2025/02 Research paper (scientific journal)

    Publisher: Elsevier BV
  5. Speckle signatures dictate cancer prognosis

    Hiro Takakuwa, Tetsuro Hirose

    Nature Cell Biology 2025/01/03 Research paper (scientific journal)

    Publisher: Springer Science and Business Media LLC
  6. The RNA helicase DDX39 contributes to the nuclear export of spliceosomal U snRNA by loading of PHAX onto RNA

    Ichiro Taniguchi, Tetsuro Hirose, Mutsuhito Ohno

    Nucleic Acids Research 2024/09/23 Research paper (scientific journal)

  7. Huntingtin is an RNA binding protein and participates in NEAT1-mediated paraspeckles.

    Manisha Yadav, Rachel J Harding, Tiantian Li, Xin Xu, Terence Gall-Duncan, Mahreen Khan, Costanza Ferrari Bardile, Glen L Sequiera, Shili Duan, Renu Chandrasekaran, Anni Pan, Jiachuan Bu, Tomohiro Yamazaki, Tetsuro Hirose, Panagiotis Prinos, Lynette Tippett, Clinton Turner, Maurice A Curtis, Richard L M Faull, Mahmoud A Pouladi, Christopher E Pearson, Housheng Hansen He, Cheryl H Arrowsmith

    Science advances Vol. 10 No. 29 2024/07/19 Research paper (scientific journal)

  8. The Essential Role of Architectural Noncoding RNA Neat1 in Cold-Induced Beige Adipocyte Differentiation in Mice.

    Hikaru Toya, Yuko Okamatsu-Ogura, Saori Yokoi, Misuzu Kurihara, Mari Mito, Shintaro Iwasaki, Tetsuro Hirose, Shinichi Nakagawa

    RNA (New York, N.Y.) 2024/05/01 Research paper (scientific journal)

  9. Publisher Correction: p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity.

    Carmen Adriaens, Laura Standaert, Jasmine Barra, Mathilde Latil, Annelien Verfaillie, Peter Kalev, Bram Boeckx, Paul W G Wijnhoven, Enrico Radaelli, William Vermi, Eleonora Leucci, Gaëlle Lapouge, Benjamin Beck, Joost van den Oord, Shinichi Nakagawa, Tetsuro Hirose, Anna A Sablina, Diether Lambrechts, Stein Aerts, Cédric Blanpain, Jean-Christophe Marine

    Nature medicine 2024/02/08

  10. Functional domains of nuclear long noncoding RNAs: Insights into gene regulation and intracellular architecture

    Chikashi Obuse, Tetsuro Hirose

    Current Opinion in Cell Biology 2023/12 Research paper (scientific journal)

  11. Nascent ribosomal RNA act as surfactant that suppresses growth of fibrillar centers in nucleolus.

    Tetsuya Yamamoto, Tomohiro Yamazaki, Kensuke Ninomiya, Tetsuro Hirose

    Communications biology Vol. 6 No. 1 p. 1129-1129 2023/11/07 Research paper (scientific journal)

  12. Shell protein composition specified by the lncRNA NEAT1 domains dictates the formation of paraspeckles as distinct membraneless organelles

    Hiro Takakuwa, Tomohiro Yamazaki, Sylvie Souquere, Shungo Adachi, Hyura Yoshino, Naoko Fujiwara, Tetsuya Yamamoto, Tohru Natsume, Shinichi Nakagawa, Gerard Pierron, Tetsuro Hirose

    Nature Cell Biology Vol. 25 No. 11 p. 1664-1675 2023/11/06 Research paper (scientific journal)

    Publisher: Springer Science and Business Media LLC
  13. Satellite RNAs: emerging players in subnuclear architecture and gene regulation.

    Kensuke Ninomiya, Tomohiro Yamazaki, Tetsuro Hirose

    The EMBO Journal 2023/08/01 Research paper (scientific journal)

  14. Landscape of semi-extractable RNAs across five human cell lines.

    Chao Zeng, Takeshi Chujo, Tetsuro Hirose, Michiaki Hamada

    Nucleic Acids Research 2023/07/19 Research paper (scientific journal)

  15. Nondomain biopolymers: Flexible molecular strategies to acquire biological functions.

    Kazuharu Arakawa, Tetsuro Hirose, Toshifumi Inada, Takuhiro Ito, Toshie Kai, Masaaki Oyama, Yukihide Tomari, Takao Yoda, Shinichi Nakagawa

    Genes to cells : devoted to molecular & cellular mechanisms 2023/05/30 Research paper (scientific journal)

  16. 【セントラルドグマの新常識 転写・翻訳の驚きの新機構と再定義されるDNA・RNA・タンパク質の世界】(第3章)RNAの新常識 細胞内構造体の骨格として働くRNA

    廣瀬 哲郎, 山崎 智弘, 山本 哲也

    実験医学 Vol. 40 No. 12 p. 1981-1987 2022/08 Research paper (scientific journal)

    Publisher: (株)羊土社
  17. lncRNA Neat1 regulates neuronal dysfunction post-sepsis via stabilization of hemoglobin subunit beta.

    Yan Wu, Pengfei Li, Liu Liu, Andrew J Goodwin, Perry V Halushka, Tetsuro Hirose, Shinichi Nakagawa, Jiliang Zhou, Meng Liu, Hongkuan Fan

    Molecular therapy : the journal of the American Society of Gene Therapy Vol. 30 No. 7 p. 2618-2632 2022/07/06 Research paper (scientific journal)

  18. Micellization: A new principle in the formation of biomolecular condensates.

    Tomohiro Yamazaki, Tetsuya Yamamoto, Tetsuro Hirose

    Frontiers in molecular biosciences Vol. 9 p. 974772-974772 2022 Research paper (scientific journal)

  19. NEAT1 is essential for metabolic changes that promote breast cancer growth and metastasis.

    Mi Kyung Park, Li Zhang, Kyung-Won Min, Jung-Hyun Cho, Chih-Chen Yeh, Hyesu Moon, Daniel Hormaechea-Agulla, Hyejin Mun, Seungbeom Ko, Ji Won Lee, Sonali Jathar, Aubrey S Smith, Yixin Yao, Nguyen Thu Giang, Hong Ha Vu, Victoria C Yan, Mary C Bridges, Antonis Kourtidis, Florian Muller, Jeong Ho Chang, Su Jung Song, Shinichi Nakagawa, Tetsuro Hirose, Je-Hyun Yoon, Min Sup Song

    Cell metabolism Vol. 33 No. 12 p. 2380-2397 2021/12/07 Research paper (scientific journal)

  20. Noncoding RNAs: biology and applications-a Keystone Symposia report.

    Jennifer Cable, Edith Heard, Tetsuro Hirose, Kannanganattu V Prasanth, Ling-Ling Chen, Jonathan E Henninger, Sofia A Quinodoz, David L Spector, Sarah D Diermeier, Allison M Porman, Dhiraj Kumar, Mark W Feinberg, Xiaohua Shen, Juan Pablo Unfried, Rory Johnson, Chun-Kan Chen, Jeremy E Wilusz, Adelheid Lempradl, Sean E McGeary, Lamia Wahba, Anna Marie Pyle, Amanda E Hargrove, Matthew D Simon, Marco Marcia, Róża K Przanowska, Howard Y Chang, Samie R Jaffrey, Lydia M Contreras, Qi Chen, Junchao Shi, Joshua T Mendell, Lin He, Erwei Song, John L Rinn, Mukesh Kumar Lalwani, Murat Can Kalem, Edward B Chuong, Lynne E Maquat, Xuhang Liu

    Annals of the New York Academy of Sciences Vol. 1506 No. 1 p. 118-141 2021/12 Research paper (scientific journal)

  21. Lateral surface pressure generated by nascent ribosomal RNA suppresses growth of fibrillar centers in the nucleolus

    Tetsuya Yamamoto, Tomohiro Yamazaki, Kensuke Ninomiya, Tetsuro Hirose

    bioRxiv 2021/09/10

    Publisher: Cold Spring Harbor Laboratory
  22. Distinct RNA polymerase transcripts direct the assembly of phase-separated DBC1 nuclear bodies in different cell lines

    Taro Mannen, Masato Goto, Takuya Yoshizawa, Akio Yamashita, Tetsuro Hirose, Toshiya Hayano

    Molecular Biology of the Cell Vol. 32 No. 21 p. mbc.E21-02 2021/09/08 Research paper (scientific journal)

    Publisher: American Society for Cell Biology (ASCB)
  23. SPF45/RBM17-dependent, but not U2AF-dependent, splicing in a distinct subset of human short introns.

    Kazuhiro Fukumura, Rei Yoshimoto, Luca Sperotto, Hyun-Seo Kang, Tetsuro Hirose, Kunio Inoue, Michael Sattler, Akila Mayeda

    Nature communications Vol. 12 No. 1 p. 4910-4910 2021/08/13 Research paper (scientific journal)

  24. A histone modifier, ASXL1, interacts with NONO and is involved in paraspeckle formation in hematopoietic cells

    Keita Yamamoto, Susumu Goyama, Shuhei Asada, Takeshi Fujino, Taishi Yonezawa, Naru Sato, Reina Takeda, Akiho Tsuchiya, Tomofusa Fukuyama, Yosuke Tanaka, Akihiko Yokoyama, Hikaru Toya, Ayana Kon, Yasuhito Nannya, Rena Onoguchi-Mizutani, Shinichi Nakagawa, Tetsuro Hirose, Seishi Ogawa, Nobuyoshi Akimitsu, Toshio Kitamura

    Cell Reports Vol. 36 No. 8 p. 109576-109576 2021/08 Research paper (scientific journal)

    Publisher: Elsevier BV
  25. Control of condensates dictates nucleolar architecture.

    Tomohiro Yamazaki, Tetsuro Hirose

    Science (New York, N.Y.) Vol. 373 No. 6554 p. 486-487 2021/07/30 Research paper (scientific journal)

  26. m6A modification of HSATIII lncRNAs regulates temperature-dependent splicing.

    Kensuke Ninomiya, Junichi Iwakiri, Mahmoud Khamis Aly, Yuriko Sakaguchi, Shungo Adachi, Tohru Natsume, Goro Terai, Kiyoshi Asai, Tsutomu Suzuki, Tetsuro Hirose

    The EMBO journal Vol. 40 No. 15 2021/06/29 Research paper (scientific journal)

  27. Paraspeckles are constructed as block copolymer micelles.

    Tomohiro Yamazaki, Tetsuya Yamamoto, Hyura Yoshino, Sylvie Souquere, Shinichi Nakagawa, Gerard Pierron, Tetsuro Hirose

    The EMBO journal Vol. 40 No. 12 2021/06/15 Research paper (scientific journal)

  28. ArcRNAs and the formation of nuclear bodies.

    Shinichi Nakagawa, Tomohiro Yamazaki, Taro Mannen, Tetsuro Hirose

    Mammalian genome : official journal of the International Mammalian Genome Society Vol. 33 No. 2 p. 382-401 2021/06/03 Research paper (scientific journal)

  29. 【相分離 メカニズムと疾患"膜のないオルガネラ"はいかに機能するか?神経変性疾患・ウイルス感染とどう関わるか?】(第2章)相分離と細胞内構造 核内の非膜オルガネラ パラスペックル

    山崎 智弘, 山本 哲也, 廣瀬 哲郎

    実験医学 Vol. 39 No. 10 p. 1520-1526 2021/06

    Publisher: (株)羊土社
  30. RNAが形作る相分離構造体

    山崎 智弘, 廣瀬 哲郎

    生化学 Vol. 93 No. 3 p. 385-389 2021/06

    Publisher: (公社)日本生化学会
  31. Small molecule targeting r(UGGAA)n disrupts RNA foci and alleviates disease phenotype in Drosophila model.

    Tomonori Shibata, Konami Nagano, Morio Ueyama, Kensuke Ninomiya, Tetsuro Hirose, Yoshitaka Nagai, Kinya Ishikawa, Gota Kawai, Kazuhiko Nakatani

    Nature communications Vol. 12 No. 1 p. 236-236 2021/01/11 Research paper (scientific journal)

  32. CRISPR-Mediated Mutagenesis of Long Noncoding RNAs.

    Tomohiro Yamazaki, Tetsuro Hirose

    Methods in molecular biology (Clifton, N.J.) Vol. 2254 p. 283-303 2021 Research paper (scientific journal)

  33. Inhibition of the long non-coding RNA NEAT1 protects cardiomyocytes from hypoxia in vitro via decreased pri-miRNA processing

    Olof Gidlöf, Kerstin Bader, Selvi Celik, Mario Grossi, Shinichi Nakagawa, Tetsuro Hirose, Bernhard Metzler, Björn Olde, David Erlinge

    Cell Death & Disease Vol. 11 No. 8 p. 677-677 2020/08 Research paper (scientific journal)

    Publisher: Springer Science and Business Media LLC
  34. Functional annotation of human long noncoding RNAs via molecular phenotyping.

    Jordan A Ramilowski, Chi Wai Yip, Saumya Agrawal, Jen-Chien Chang, Yari Ciani, Ivan V Kulakovskiy, Mickaël Mendez, Jasmine Li Ching Ooi, John F Ouyang, Nick Parkinson, Andreas Petri, Leonie Roos, Jessica Severin, Kayoko Yasuzawa, Imad Abugessaisa, Altuna Akalin, Ivan V Antonov, Erik Arner, Alessandro Bonetti, Hidemasa Bono, Beatrice Borsari, Frank Brombacher, Christopher JF Cameron, Carlo Vittorio Cannistraci, Ryan Cardenas, Melissa Cardon, Howard Chang, Josée Dostie, Luca Ducoli, Alexander Favorov, Alexandre Fort, Diego Garrido, Noa Gil, Juliette Gimenez, Reto Guler, Lusy Handoko, Jayson Harshbarger, Akira Hasegawa, Yuki Hasegawa, Kosuke Hashimoto, Norihito Hayatsu, Peter Heutink, Tetsuro Hirose, Eddie L Imada, Masayoshi Itoh, Bogumil Kaczkowski, Aditi Kanhere, Emily Kawabata, Hideya Kawaji, Tsugumi Kawashima, S Thomas Kelly, Miki Kojima, Naoto Kondo, Haruhiko Koseki, Tsukasa Kouno, Anton Kratz, Mariola Kurowska-Stolarska, Andrew Tae Jun Kwon, Jeffrey Leek, Andreas Lennartsson, Marina Lizio, Fernando López-Redondo, Joachim Luginbühl, Shiori Maeda, Vsevolod J Makeev, Luigi Marchionni, Yulia A Medvedeva, Aki Minoda, Ferenc Müller, Manuel Muñoz-Aguirre, Mitsuyoshi Murata, Hiromi Nishiyori, Kazuhiro R Nitta, Shuhei Noguchi, Yukihiko Noro, Ramil Nurtdinov, Yasushi Okazaki, Valerio Orlando, Denis Paquette, Callum J C Parr, Owen J L Rackham, Patrizia Rizzu, Diego Fernando Sánchez Martinez, Albin Sandelin, Pillay Sanjana, Colin A M Semple, Youtaro Shibayama, Divya M Sivaraman, Takahiro Suzuki, Suzannah C Szumowski, Michihira Tagami, Martin S Taylor, Chikashi Terao, Malte Thodberg, Supat Thongjuea, Vidisha Tripathi, Igor Ulitsky, Roberto Verardo, Ilya E Vorontsov, Chinatsu Yamamoto, Robert S Young, J Kenneth Baillie, Alistair R R Forrest, Roderic Guigó, Michael M Hoffman, Chung Chau Hon, Takeya Kasukawa, Sakari Kauppinen, Juha Kere, Boris Lenhard, Claudio Schneider, Harukazu Suzuki, Ken Yagi, Michiel J L de Hoon, Jay W Shin, Piero Carninci

    Genome research Vol. 30 No. 7 p. 1060-1072 2020/07 Research paper (scientific journal)

  35. Long non-coding RNA Neat1 regulates adaptive behavioural response to stress in mice.

    Michail S Kukharsky, Natalia N Ninkina, Haiyan An, Vsevolod Telezhkin, Wenbin Wei, Camille Rabesahala de Meritens, Johnathan Cooper-Knock, Shinichi Nakagawa, Tetsuro Hirose, Vladimir L Buchman, Tatyana A Shelkovnikova

    Translational psychiatry Vol. 10 No. 1 p. 171-171 2020/05/28 Research paper (scientific journal)

  36. Forced isoform switching of Neat1_1 to Neat1_2 leads to the loss of Neat1_1 and the hyperformation of paraspeckles but does not affect the development and growth of mice.

    Momo Isobe, Hikaru Toya, Mari Mito, Tomoki Chiba, Hiroshi Asahara, Tetsuro Hirose, Shinichi Nakagawa

    RNA (New York, N.Y.) Vol. 26 No. 3 p. 251-264 2020/03 Research paper (scientific journal)

  37. Short Tandem Repeat-Enriched Architectural RNAs in Nuclear Bodies: Functions and Associated Diseases.

    Kensuke Ninomiya, Tetsuro Hirose

    Non-coding RNA Vol. 6 No. 1 2020/02/20

  38. Architectural RNAs for Membraneless Nuclear Body Formation.

    Tomohiro Yamazaki, Shinichi Nakagawa, Tetsuro Hirose

    Cold Spring Harbor symposia on quantitative biology Vol. 84 p. 227-237 2020/02/04 Research paper (scientific journal)

  39. Lnc RNA ‐dependent nuclear stress bodies promote intron retention through SR protein phosphorylation

    Kensuke Ninomiya, Shungo Adachi, Tohru Natsume, Junichi Iwakiri, Goro Terai, Kiyoshi Asai, Tetsuro Hirose

    The EMBO Journal Vol. 39 No. 3 2020/02/03 Research paper (scientific journal)

    Publisher: EMBO
  40. NONO Is a Negative Regulator of SOX2 Promoter

    SHANSHAN LIANG, HIDEHISA TAKAHASHI, TETSURO HIROSE, YASUHIRO KURAMITSU, SHIGETSUGU HATAKEYAMA, HIRONORI YOSHIYAMA, RUOYU WANG, JUN-ICHI HAMADA, HISASHI IIZASA

    Cancer Genomics - Proteomics Vol. 17 No. 4 p. 359-367 2020 Research paper (scientific journal)

    Publisher: Anticancer Research USA Inc.
  41. Phase separation driven by production of architectural RNA transcripts

    Tetsuya Yamamoto, Tomohiro Yamazaki, Tetsuro Hirose

    Soft Matter Vol. 16 No. 19 p. 4692-4698 2020 Research paper (scientific journal)

    Publisher: Royal Society of Chemistry (RSC)
  42. The long noncoding RNA NEAT1_1 is seemingly dispensable for normal tissue homeostasis and cancer cell growth

    Carmen Adriaens, Florian Rambow, Greet Bervoets, Toomas Silla, Mari Mito, Tomoki Chiba, Hiroshi Asahara, Tetsuro Hirose, Shinichi Nakagawa, Torben Heick Jensen, Jean-Christophe Marine

    RNA Vol. 25 No. 12 p. 1681-1695 2019/12/24 Research paper (scientific journal)

    Publisher: Cold Spring Harbor Laboratory
  43. Long noncoding RNA NEAT1 modulates immune cell functions and is suppressed in early onset myocardial infarction patients.

    Gast M, Rauch BH, Haghikia A, Nakagawa S, Haas J, Stroux A, Schmidt D, Schumann P, Weiss S, Jensen L, Kratzer A, Kraenkel N, Müller C, Börnigen D, Hirose T, Blankenberg S, Escher F, Kühl AA, Kuss AW, Meder B, Landmesser U, Zeller T, Poller W

    Cardiovascular research Vol. 115 No. 13 p. 1886-1906 2019/11

  44. Molecular anatomy of the architectural NEAT1 noncoding RNA: The domains, interactors, and biogenesis pathway required to build phase-separated nuclear paraspeckles.

    Hirose T, Yamazaki T, Nakagawa S

    Wiley interdisciplinary reviews. RNA Vol. 10 No. 6 2019/11 Research paper (scientific journal)

  45. A Distinct Subset of Human Short Introns: U2AF Heterodimer Is Replaced by SPF45 (RBM17) as General Splicing Factor

    Fukumura K, Yoshimoto R, Hirose T, Inoue K, Mayeda A

    bioRxiv 2019/09

    Publisher: Cold Spring Harbor Laboratory
  46. Two distinct nuclear stress bodies containing different sets of RNA-binding proteins are formed with HSATIII architectural noncoding RNAs upon thermal stress exposure.

    Mahmoud Khamis Aly, Kensuke Ninomiya, Shungo Adachi, Tohru Natsume, Tetsuro Hirose

    Biochemical and biophysical research communications Vol. 516 No. 2 p. 419-423 2019/08/20 Research paper (scientific journal)

  47. Cross-Regulation between TDP-43 and Paraspeckles Promotes Pluripotency-Differentiation Transition.

    Modic M, Grosch M, Rot G, Schirge S, Lepko T, Yamazaki T, Lee FCY, Rusha E, Shaposhnikov D, Palo M, Merl-Pham J, Cacchiarelli D, Rogelj B, Hauck SM, von Mering C, Meissner A, Lickert H, Hirose T, Ule J, Drukker M

    Molecular cell Vol. 74 No. 5 p. 951-965.e13 2019/06 Research paper (scientific journal)

  48. The expression of long noncoding RNA NEAT1 is reduced in schizophrenia and modulates oligodendrocytes transcription.

    Katsel P, Roussos P, Fam P, Khan S, Tan W, Hirose T, Nakagawa S, Pletnikov MV, Haroutunian V

    NPJ schizophrenia Vol. 5 No. 1 2019/01

  49. Molecular dissection of nuclear paraspeckles: towards understanding the emerging world of the RNP milieu.

    Nakagawa S, Yamazaki T, Hirose T

    Open biology Vol. 8 No. 10 2018/10 Research paper (scientific journal)

  50. CRISPRa-mediated NEAT1 lncRNA upregulation induces formation of intact paraspeckles.

    Yamazaki T, Fujikawa C, Kubota A, Takahashi A, Hirose T

    Biochem Biophys Res Commun. Vol. 504 No. 1 p. 218-224 2018/09 Research paper (scientific journal)

  51. Long noncoding RNA NEAT1 (nuclear paraspeckle assembly transcript 1) is critical for phenotypic switching of vascular smooth muscle cells.

    Ahmed ASI, Dong K, Liu J, Wen T, Yu L, Xu F, Kang X, Osman I, Hu G, Bunting KM, Crethers D, Gao H, Zhang W, Liu Y, Wen K, Agarwal G, Hirose T, Nakagawa S, Vazdarjanova A, Zhou J

    Proc Natl Acad Sci USA. Vol. 115 No. 37 p. E8660-E8667 2018/08 Research paper (scientific journal)

  52. Functional Domains of NEAT1 Architectural lncRNA Induce Paraspeckle Assembly through Phase Separation

    Tomohiro Yamazaki, Sylvie Souquere, Takeshi Chujo, Simon Kobelke, Yee Seng Chong, Archa H. Fox, Charles S. Bond, Shinichi Nakagawa, Gerard Pierron, Tetsuro Hirose

    Molecular Cell Vol. 70 No. 6 p. 1038-1053.e7 2018/06/21 Research paper (scientific journal)

    Publisher: Cell Press
  53. Paraspeckles: Where Long Noncoding RNA Meets Phase Separation

    Archa H. Fox, Shinichi Nakagawa, Tetsuro Hirose, Charles S. Bond

    Trends in Biochemical Sciences Vol. 43 No. 2 p. 124-135 2018/02/01 Research paper (scientific journal)

    Publisher: Elsevier Ltd
  54. Neat1 is a p53-inducible lincRNA essential for transformation suppression

    Stephano S. Mello, Carolyn Sinow, Nitin Raj, Pawel K. Mazur, Kathryn Bieging-Rolett, Daniela Kenzelmann Broz, Jamie F. Conklin Imam, Hannes Vogel, Laura D. Wood, Julien Sage, Tetsuro Hirose, Shinichi Nakagawa, John Rinn, Laura D. Attardi

    GENES & DEVELOPMENT Vol. 31 No. 11 p. 1095-1108 2017/06 Research paper (scientific journal)

  55. Unusual semi-extractability as a hallmark of nuclear body-associated architectural noncoding RNAs

    Takeshi Chujo, Tomohiro Yamazaki, Tetsuya Kawaguchi, Satoshi Kurosaka, Toru Takumi, Shinichi Nakagawa, Tetsuro Hirose

    EMBO JOURNAL Vol. 36 No. 10 p. 1447-1462 2017/05 Research paper (scientific journal)

  56. RNase sensitivity screening for nuclear bodies with RNA scaffolds in mammalian cells.

    Mannen T, Hirose T

    Bio-protocol. Vol. 7 No. Iss8 2017/04 Research paper (scientific journal)

  57. Nuclear bodies built on architectural long noncoding RNAs: Unifying principles of their construction and function

    Takeshi Chujo, Tetsuro Hirose

    Molecules and Cells Vol. 40 No. 12 p. 889-896 2017 Research paper (scientific journal)

    Publisher: Korean Society for Molecular and Cellular Biology
  58. Control of the heat stress-induced alternative splicing of a subset of genes by hnRNP K

    Koichi Yamamoto, Mari T. Furukawa, Kazuhiro Fukumura, Arisa Kawamura, Tomoko Yamada, Hitoshi Suzuki, Tetsuro Hirose, Hiroshi Sakamoto, Kunio Inoue

    GENES TO CELLS Vol. 21 No. 9 p. 1006-1014 2016/09 Research paper (scientific journal)

  59. Structural, super-resolution microscopy analysis of paraspeckle nuclear body organization

    Jason A. West, Mari Mito, Satoshi Kurosaka, Toru Takumi, Chiharu Tanegashima, Takeshi Chujo, Kaori Yanaka, Robert E. Kingston, Tetsuro Hirose, Charles Bond, Archa Fox, Shinichi Nakagawa

    JOURNAL OF CELL BIOLOGY Vol. 214 No. 7 p. 817-830 2016/09 Research paper (scientific journal)

  60. Paraspeckles modulate the intranuclear distribution of paraspeckle-associated Ctn RNA

    Aparna Anantharaman, Mahdieh Jadaliha, Vidisha Tripathi, Shinichi Nakagawa, Tetsuro Hirose, Michael F. Jantsch, Supriya G. Prasanth, Kannanganattu V. Prasanth

    SCIENTIFIC REPORTS Vol. 6 No. 34043 2016/09 Research paper (scientific journal)

  61. p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity

    Carmen Adriaens, Laura Standaert, Jasmine Barra, MathilDe latil, Annelien Verfaillie, Peter Kalev, Bram Boeckx, Paul W. G. Wijnhoven, Enrico Radaelli, William Vermi, Eleonora Leucci, Gaelle Lapouge, Benjamin Beck, Joost van den Oord, Shinichi Nakagawa, Tetsuro Hirose, Anna A. Sablina, Diether Lambrechts, Stein Aerts, Cedric Blanpain, Jean-Christophe Marine

    NATURE MEDICINE Vol. 22 No. 8 p. 861-8 2016/08 Research paper (scientific journal)

  62. The Sam68 nuclear body is composed of two RNase-sensitive substructures joined by the adaptor HNRNPL

    Taro Mannen, Seisuke Yamashita, Kozo Tomita, Naoki Goshima, Tetsuro Hirose

    JOURNAL OF CELL BIOLOGY Vol. 214 No. 1 p. 45-59 2016/07 Research paper (scientific journal)

  63. Simultaneous multicolor detection of RNA and proteins using super-resolution microscopy

    Mari Mito, Tetsuya Kawaguchi, Tetsuro Hirose, Shinichi Nakagawa

    METHODS Vol. 98 No. 98 p. 158-165 2016/04 Research paper (scientific journal)

  64. Architectural RNAs (arcRNAs): A class of long noncoding RNAs that function as the scaffold of nuclear bodies.

    Chujo T, Yamazaki T, Hirose T

    Biochimica et biophysica acta Vol. 1859 No. 1 p. 139-146 2016/01

  65. GAS5 Gene.

    Aly, MK, Hirose T

    eLS. 2016

  66. Architectural RNAs (arcRNAs): A class of long noncoding RNAs that function as the scaffold of nuclear bodies

    Takeshi Chujo, Tomohiro Yamazaki, Tetsuro Hirose

    BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS Vol. 1859 No. 1 p. 139-146 2016/01 Research paper (scientific journal)

  67. Clues to long noncoding RNA taxonomy

    Tetsuro Hirose, Shinichi Nakagawa

    BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS Vol. 1859 No. 1 p. 1-2 2016/01 Research paper (scientific journal)

  68. Chromatin remodeling complexes in the assembly of long noncoding RNA-dependent nuclear bodies

    Tetsuya Kawaguchi, Tetsuro Hirose

    NUCLEUS Vol. 6 No. 6 p. 462-467 2015/11 Research paper (scientific journal)

  69. Prion-like domains in RNA binding proteins are essential for building subnuclear paraspeckles

    Sven Hennig, Geraldine Kong, Taro Mannen, Agata Sadowska, Simon Kobelke, Amanda Blythe, Gavin J. Knote, K. Swaminathan Iyer, Diwei Ho, Estella A. Newcombe, Kana Hosoki, Naoki Goshima, Tetsuya Kawaguchi, Danny Hatters, Laura Trinkle-Mulcahy, Tetsuro Hirose, Charles S. Bond, Archa H. Fox

    JOURNAL OF CELL BIOLOGY Vol. 210 No. 4 p. 529-539 2015/08 Research paper (scientific journal)

  70. SWI/SNF chromatin-remodeling complexes function in noncoding RNA-dependent assembly of nuclear bodies

    Tetsuya Kawaguchi, Akie Tanigawa, Takao Naganuma, Yasuyuki Ohkawa, Sylvie Souquere, Gerard Pierron, Tetsuro Hirose

    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA Vol. 112 No. 14 p. 4304-4309 2015/04 Research paper (scientific journal)

  71. The building process of the functional paraspeckle with long non-coding RNAs

    Tomohiro Yamazaki, Tetsuro Hirose

    Frontiers in Bioscience - Elite Vol. 7E No. 1 p. 1-47 2015/01/15 Research paper (scientific journal)

    Publisher: Frontiers in Bioscience
  72. Long noncoding RNAs as structural and functional components of nuclear bodies

    Taro Mannen, Takeshi Chujo, Tetsuro Hirose

    Long Noncoding RNAs Structures and Functions Vol. ed. Kurokawa. R.Springer. p. 111-129 2015/01/01 Part of collection (book)

    Publisher: Springer Japan
  73. Genome-wide co-localization screening of nuclear body components using a fluorescently tagged FLJ cDNA clone library.

    Hirose T, Goshima N

    Methods Mol Biol. Vol. 1262 p. 155-163 2015 Research paper (scientific journal)

  74. The long noncoding RNA Neat1 is required for mammary gland development and lactation

    Laura Standaert, Carmen Adriaens, Enrico Radaelli, Alexandra Van Keymeulen, Cedric Blanpain, Tetsuro Hirose, Shinichi Nakagawa, Jean-Christophe Marine

    RNA Vol. 20 No. 12 p. 1844-1849 2014/12 Research paper (scientific journal)

  75. The lncRNA Neat1 is required for corpus luteum formation and the establishment of pregnancy in a subpopulation of mice

    Shinichi Nakagawa, Masayuki Shimada, Kaori Yanaka, Mari Mito, Takashi Arai, Eiki Takahashi, Youko Fujita, Toshihiko Fujimori, Laura Standaert, Jean-Christophe Marine, Tetsuro Hirose

    DEVELOPMENT Vol. 141 No. 23 p. 4618-4627 2014/12 Research paper (scientific journal)

  76. The oestrogen receptor alpha-regulated lncRNA NEAT1 is a critical modulator of prostate cancer

    Dimple Chakravarty, Andrea Sboner, Sujit S. Nair, Eugenia Giannopoulou, Ruohan Li, Sven Hennig, Juan Miguel Mosquera, Jonathan Pauwels, Kyung Park, Myriam Kossai, Theresa Y. MacDonald, Jacqueline Fontugne, Nicholas Erho, Ismael A. Vergara, Mercedeh Ghadessi, Elai Davicioni, Robert B. Jenkins, Nallasivam Palanisamy, Zhengming Chen, Shinichi Nakagawa, Tetsuro Hirose, Neil H. Bander, Himisha Beltran, Archa H. Fox, Olivier Elemento, Mark A. Rubin

    NATURE COMMUNICATIONS Vol. 5 No. 5 2014/11 Research paper (scientific journal)

  77. Rapid and efficient elimination of specific nuclear noncoding RNAs in mammalian cells with antisense oligonucleotides

    Tetsuro Hirose, Taro Mannen

    Regulatory Non-Coding RNAs: Methods and Protocols Vol. 1206 p. 149-156 2014/09/20 Part of collection (book)

    Publisher: Springer New York
  78. Long noncoding RNA HOTAIR is relevant to cellular proliferation, invasiveness, and clinical relapse in small-cell lung cancer

    Hiroshi Ono, Noriko Motoi, Hiroko Nagano, Eisaku Miyauchi, Masaru Ushijima, Masaaki Matsuura, Sakae Okumura, Makoto Nishio, Tetsuro Hirose, Naohiko Inase, Yuichi Ishikawa

    CANCER MEDICINE Vol. 3 No. 3 p. 632-642 2014/06 Research paper (scientific journal)

  79. Elements and machinery of non-coding RNAs: toward their taxonomy

    Tetsuro Hirose, Yuichiro Mishima, Yukihide Tomari

    EMBO REPORTS Vol. 15 No. 5 p. 489-507 2014/05 Research paper (scientific journal)

  80. NEAT1 long noncoding RNA regulates transcription via protein sequestration within subnuclear bodies

    Tetsuro Hirose, Giorgio Virnicchi, Akie Tanigawa, Takao Naganuma, Ruohan Li, Hiroshi Kimura, Takahide Yokoi, Shinichi Nakagawa, Marianne Benard, Archa H. Fox, Gerard Pierron

    MOLECULAR BIOLOGY OF THE CELL Vol. 25 No. 1 p. 169-183 2014/01 Research paper (scientific journal)

  81. The long non-coding RNA nuclear-enriched abundant transcript 1_2 induces paraspeckle formation in the motor neuron during the early phase of amyotrophic lateral sclerosis.

    Yoshinori Nishimoto, Shinichi Nakagawa, Tetsuro Hirose, Hirotaka James Okano, Masaki Takao, Shinsuke Shibata, Satoshi Suyama, Ken-Ichiro Kuwako, Takao Imai, Shigeo Murayama, Norihiro Suzuki, Hideyuki Okano

    Molecular brain Vol. 6 p. 31-31 2013/07/08 Research paper (scientific journal)

  82. 【生命分子を統合するRNA-その秘められた役割と制御機構 分子進化・サイレンシング・non-coding RNAからRNA修飾・編集・RNA-タンパク質間相互作用まで】(第4章)RNA-RNA、RNA-タンパク質間相互作用 non-coding RNAによる核内構造体構築機構

    萬年 太郎, 廣瀬 哲郎

    実験医学 Vol. 31 No. 7 p. 1157-1164 2013/05

    Publisher: (株)羊土社
  83. Paraspeckle formation during the biogenesis of long non-coding RNAs

    Takao Naganuma, Tetsuro Hirose

    RNA Biology Vol. 10 No. 3 p. 456-461 2013 Research paper (scientific journal)

    Publisher: Taylor and Francis Inc.
  84. The long non-coding RNA nuclear-enriched abundant transcript 1-2 induces paraspeckle formation in the motor neuron during the early phase of amyotrophic lateral sclerosis

    Yoshinori Nishimoto, Shinichi Nakagawa, Tetsuro Hirose, Hirotaka James Okano, Masaki Takao, Shinsuke Shibata, Satoshi Suyama, Ken-Ichiro Kuwako, Takao Imai, Shigeo Murayama, Norihiro Suzuki, Hideyuki Okano

    Molecular Brain Vol. 6 No. 1 2013 Research paper (scientific journal)

  85. Paraspeckles: Possible nuclear hubs by the RNA for the RNA

    Tetsuro Hirose, Shinichi Nakagawa

    Biomolecular Concepts Vol. 3 No. 5 p. 415-428 2012/10/01 Research paper (scientific journal)

    Publisher: De Gruyter Mouton
  86. Alternative 3 '-end processing of long noncoding RNA initiates construction of nuclear paraspeckles

    Takao Naganuma, Shinichi Nakagawa, Akie Tanigawa, Yasnory F. Sasaki, Naoki Goshima, Tetsuro Hirose

    EMBO JOURNAL Vol. 31 No. 20 p. 4020-4034 2012/10 Research paper (scientific journal)

  87. Paraspeckle nuclear bodies-useful uselessness?

    Shinichi Nakagawa, Tetsuro Hirose

    CELLULAR AND MOLECULAR LIFE SCIENCES Vol. 69 No. 18 p. 3027-3036 2012/09 Research paper (scientific journal)

  88. Malat1 is not an essential component of nuclear speckles in mice

    Shinichi Nakagawa, Joanna Y. Ip, Go Shioi, Vidisha Tripathi, Xinying Zong, Tetsuro Hirose, Kannanganattu V. Prasanth

    RNA-A PUBLICATION OF THE RNA SOCIETY Vol. 18 No. 8 p. 1487-1499 2012/08 Research paper (scientific journal)

  89. Identification of cis- and trans-acting factors involved in the localization of MALAT-1 noncoding RNA to nuclear speckles.

    Ryu Miyagawa, Keiko Tano, Rie Mizuno, Yo Nakamura, Kenichi Ijiri, Randeep Rakwal, Junko Shibato, Yoshinori Masuo, Akila Mayeda, Tetsuro Hirose, Nobuyoshi Akimitsu

    RNA (New York, N.Y.) Vol. 18 No. 4 p. 738-51 2012/04 Research paper (scientific journal)

  90. Identification of the cis-acting and trans-acting determinants of noncoding RNA MALAT-1 for the nuclear speckles localization

    Miyagawa R, Mizuno R, Nakamura Y, Ijiri K, Rakwal R, Shibato J, Masuo Y, Hirose T, Akimitsu N

    RNA. Vol. 18 No. 4 p. 738-751 2012/04 Research paper (scientific journal)

  91. U7 small nuclear ribonucleoprotein represses histone gene transcription in cell cycle-arrested cells

    Takashi Ideue, Shungo Adachi, Takao Naganuma, Akie Tanigawa, Tohru Natsume, Tetsuro Hirose

    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA Vol. 109 No. 15 p. 5693-5698 2012/04 Research paper (scientific journal)

  92. Architectural roles of long noncoding RNAs in the intranuclear formation of functional paraspeckles

    Tetsuya Kawaguchi, Tetsuro Hirose

    FRONTIERS IN BIOSCIENCE-LANDMARK Vol. 17 p. 1729-1746 2012/01 Research paper (scientific journal)

  93. Paraspeckles are subpopulation-specific nuclear bodies that are not essential in mice

    Shinichi Nakagawa, Takao Naganuma, Go Shioi, Tetsuro Hirose

    JOURNAL OF CELL BIOLOGY Vol. 193 No. 1 p. 31-39 2011/04 Research paper (scientific journal)

  94. Gas5 gene. version 2.

    Hirose T

    Encyclopedia on Human Genome. Vol. e1-5 2011 Research paper (scientific journal)

  95. A thymus-specific noncoding RNA, Thy-ncR1, is a cytoplasmic riboregulator of MFAP4 mRNA in immature T-cell lines

    Kazuma Aoki, Akira Harashima, Miho Sano, Takahide Yokoi, Shuji Nakamura, Masayoshi Kibata, Tetsuro Hirose

    BMC MOLECULAR BIOLOGY Vol. 11 No. 99 2010/12 Research paper (scientific journal)

  96. Emerging roles of noncoding RNAs in subcellular architecture and gene expression.

    Hirose T

    RNA technologies & Their applications. Vol. Springer p. 370-386 2010 Research paper (scientific journal)

  97. Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation

    Kunio Kikuchi, Makiha Fukuda, Tomoya Ito, Mitsuko Inoue, Takahide Yokoi, Suenori Chiku, Toutai Mitsuyama, Kiyoshi Asai, Tetsuro Hirose, Yasunori Aizawa

    NUCLEIC ACIDS RESEARCH Vol. 37 No. 15 p. 4987-5000 2009/08 Research paper (scientific journal)

  98. Efficient oligonucleotide-mediated degradation of nuclear noncoding RNAs in mammalian cultured cells

    Takashi Ideue, Kimihiro Hino, Saori Kitao, Takahide Yokoi, Tetsuro Hirose

    RNA-A PUBLICATION OF THE RNA SOCIETY Vol. 15 No. 8 p. 1578-1587 2009/08 Research paper (scientific journal)

  99. MEN epsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles

    Yasnory T. F. Sasaki, Takashi Ideue, Miho Sano, Toutai Mituyama, Tetsuro Hirose

    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA Vol. 106 No. 8 p. 2525-2530 2009/02 Research paper (scientific journal)

  100. How to build a paraspeckle

    Yasnory T. F. Sasaki, Tetsuro Hirose

    GENOME BIOLOGY Vol. 10 No. 7 2009 Research paper (scientific journal)

  101. Translation of psbC mRNAs starts from the downstream GUG, not the upstream AUG, and requires the extended shine-dalgarno sequence in tobacco chloroplasts

    Hiroshi Kuroda, Haruka Suzuki, Takahiro Kusutnegi, Tetsuro Hirose, Yasushi Yukawa, Masahiro Sugiura

    PLANT AND CELL PHYSIOLOGY Vol. 48 No. 9 p. 1374-1378 2007/09 Research paper (scientific journal)

  102. Tissue-specific splicing regulator Fox-1 induces exon skipping by interfering E complex formation on the downstream intron of human F1 gamma gene

    Kazuhiro Fukumura, Ayako Kato, Yui Jin, Takashi Ideue, Tetsuro Hirose, Naoyuki Kataoka, Toshinobu Fujiwara, Hiroshi Sakamoto, Kunio Inoue

    NUCLEIC ACIDS RESEARCH Vol. 35 No. 16 p. 5303-5311 2007/08 Research paper (scientific journal)

  103. Introns play an essential role in splicing-dependent formation of the exon junction complex

    Takashi Ideue, Yasnory T. F. Sasaki, Masatoshi Hagiwara, Tetsuro Hirose

    GENES & DEVELOPMENT Vol. 21 No. 16 p. 1993-1998 2007/08 Research paper (scientific journal)

  104. Coordinated expression of ncRNAs and HOX mRNAs in the human HOXA locus

    Yasnory T. F. Sasaki, Miho Sano, Taishin Kin, Kiyoshi Asai, Tetsuro Hirose

    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS Vol. 357 No. 3 p. 724-730 2007/06 Research paper (scientific journal)

  105. Identification and characterization of human non-coding RNAs with tissue-specific expression

    Yasnory T. F. Sasaki, Miho Sano, Takashi Ideue, Taishin Kin, Kiyoshi Asai, Tetsuro Hirose

    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS Vol. 357 No. 4 p. 991-996 2007/06 Research paper (scientific journal)

  106. The interaction between cap-binding complex and RNA export factor is required for intronless mRNA export

    Takayuki Nojima, Tetsuro Hirose, Hiroshi Kimura, Masatoshi Hagiwara

    JOURNAL OF BIOLOGICAL CHEMISTRY Vol. 282 No. 21 p. 15645-15651 2007/05 Research paper (scientific journal)

  107. A spliceosomal intron binding protein, IBP160, links position-dependent assembly of intron-encoded box C/D snoRNP to pre-mRNA splicing

    Tetsuro Hirose, Takashi Ideue, Misato Nagai, Masatoshi Hagiwara, Mei-Di Shu, Joan A. Steitz

    MOLECULAR CELL Vol. 23 No. 5 p. 673-684 2006/09 Research paper (scientific journal)

  108. Splicing of U12-type introns deposits an exon junction complex competent to induce nonsense-mediated mRNA decay

    T Hirose, MD Shu, JA Steitz

    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA Vol. 101 No. 52 p. 17976-17981 2004/12 Research paper (scientific journal)

  109. Multiple elements required for translation of plastid atpB mRNA lacking the Shine-Dalgarno sequence

    T Hirose, M Sugiura

    NUCLEIC ACIDS RESEARCH Vol. 32 No. 11 p. 3503-3510 2004/06 Research paper (scientific journal)

  110. In vitro RNA editing systems from higher plant chloroplasts.

    Hirose T, Miyamoto T, Obokata J, Sugiura M

    Methods Mol Biol. Vol. 265 p. 333-44 2004 Research paper (scientific journal)

  111. Functional shine-dalgarno-like sequences for translational initiation of chloroplast mRNAs

    T Hirose, M Sugiura

    PLANT AND CELL PHYSIOLOGY Vol. 45 No. 1 p. 114-117 2004/01 Research paper (scientific journal)

  112. Splicing-dependent and -independent modes of assembly for intron-encoded box C/D snoRNPs in mammalian cells

    T Hirose, MD Shu, JA Steitz

    MOLECULAR CELL Vol. 12 No. 1 p. 113-123 2003/07 Research paper (scientific journal)

  113. gas5 gene. (Level 3 article).

    Hirose T, Steitz JA

    Encyclopedia on Human Genome. Vol. Nature Publishing group 2003 Research paper (scientific journal)

  114. Position within the host intron is critical for efficient processing of box C/D snoRNAs in mammalian cells

    T Hirose, JA Steitz

    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA Vol. 98 No. 23 p. 12914-12919 2001/11 Research paper (scientific journal)

  115. Involvement of a site-specific trans-acting factor and a common RNA-binding protein in the editing of chloroplast mRNAs: development of a chloroplast in vitro RNA editing system

    T Hirose, M Sugiura

    EMBO JOURNAL Vol. 20 No. 5 p. 1144-1152 2001/03 Research paper (scientific journal)

  116. RNA editing sites in tobacco chloroplast transcripts: editing as a possible regulator of chloroplast RNA polymerase activity

    T Hirose, T Kusumegi, T Tsudzuki, M Sugiura

    MOLECULAR AND GENERAL GENETICS Vol. 262 No. 3 p. 462-467 1999/10 Research paper (scientific journal)

  117. The chloroplast infA gene with a functional UUG initiation codon

    T Hirose, T Ideue, T Wakasugi, M Sugiura

    FEBS LETTERS Vol. 445 No. 1 p. 169-172 1999/02 Research paper (scientific journal)

  118. Translation of tobacco chloroplast rps14 mRNA depends on a Shine-Dalgarno-like sequence in the 5 '-untranslated region but not on internal RNA editing in the coding region

    T Hirose, T Kusumegi, M Sugiura

    FEBS LETTERS Vol. 430 No. 3 p. 257-260 1998/07 Research paper (scientific journal)

  119. Newly identified genes in tobacco plastid genome

    T Tsudzuki, J Tsudzuki, K Nakashima, T Wakasugi, T Hirose, M Sugita, M Sugiura

    PHOTOSYNTHESIS: MECHANISMS AND EFFECTS, VOLS I-V p. 2953-2956 1998 Research paper (international conference proceedings)

  120. The function of the cyanobacterial RNA-binding proteins

    M Mutsuda, T Hirose, M Sugiura, M Sugita

    PHOTOSYNTHESIS: MECHANISMS AND EFFECTS, VOLS I-V p. 2937-2940 1998 Research paper (international conference proceedings)

  121. Translational control of photosynthetic genes in tobacco plastids

    M Sugiura, T Kusumegi, H Sugishita, K Murakami, T Ideue, T Hirose

    PHOTOSYNTHESIS: MECHANISMS AND EFFECTS, VOLS I-V p. 2943-2946 1998 Research paper (international conference proceedings)

  122. Evolution and mechanism of translation in chloroplasts

    M Sugiura, T Hirose, M Sugita

    ANNUAL REVIEW OF GENETICS Vol. 32 p. 437-459 1998 Research paper (scientific journal)

  123. Both RNA editing and RNA cleavage are required for translation of tobacco chloroplast ndhD mRNA: a possible regulatory mechanism for the expression of a chloroplast operon consisting of functionally unrelated genes

    T Hirose, M Sugiura

    EMBO JOURNAL Vol. 16 No. 22 p. 6804-6811 1997/11 Research paper (scientific journal)

  124. Creation of a novel protein-coding region at the RNA level in black pine chloroplasts: The pattern of RNA editing in the gymnosperm chloroplast is different from that in angiosperms

    T Wakasugi, T Hirose, M Horihata, T Tsudzuki, H Kossel, M Sugiura

    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA Vol. 93 No. 16 p. 8766-8770 1996/08 Research paper (scientific journal)

  125. A ribosomal protein gene (rpl32) from tobacco chloroplast DNA is transcribed from alternative promoters: Similarities in promoter region organization in plastid housekeeping genes

    A Vera, T Hirose, M Sugiura

    MOLECULAR & GENERAL GENETICS Vol. 251 No. 5 p. 518-525 1996/07 Research paper (scientific journal)

  126. Cis-acting elements and trans-acting factors for accurate translation of chloroplast psbA mRNAs: Development of an in vitro translation system from tobacco chloroplasts

    T Hirose, M Sugiura

    EMBO JOURNAL Vol. 15 No. 7 p. 1687-1695 1996/04 Research paper (scientific journal)

  127. Occurrence of silent RNA editing in chloroplasts: Its species specificity and the influence of environmental and developmental conditions

    T Hirose, H Fan, JY Suzuki, T Wakasugi, T Tsudzuki, H Kossel, M Sugiura

    PLANT MOLECULAR BIOLOGY Vol. 30 No. 3 p. 667-672 1996/02 Research paper (scientific journal)

  128. RNA editing in atpA and atpF transcripts from tobacco: Occurrence of silent editing in chloroplasts.

    T Tsudzuki, T Hirose, H Fan, JY Suzuki, T Wakasugi, H Kossel, M Sugiura

    PHOTOSYNTHESIS: FROM LIGHT TO BIOSPHERE, VOL III p. 687-690 1995 Research paper (international conference proceedings)

  129. In vivo and in vitro analysis of translation of psbA transcripts in tobacco chloroplasts

    T Hirose, M Sugita, M Sugiura

    PHOTOSYNTHESIS: FROM LIGHT TO BIOSPHERE, VOL III p. 695-698 1995 Research paper (international conference proceedings)

  130. RNA EDITING OF TOBACCO PETB MESSENGER-RNAS OCCURS BOTH IN CHLOROPLASTS AND NONPHOTOSYNTHETIC PROPLASTIDS

    T HIROSE, T WAKASUGI, M SUGIURA, H KOSSEL

    PLANT MOLECULAR BIOLOGY Vol. 26 No. 1 p. 509-513 1994/10 Research paper (scientific journal)

  131. CHARACTERIZATION OF A CDNA-ENCODING A NOVEL TYPE OF RNA-BINDING PROTEIN IN TOBACCO - ITS EXPRESSION AND NUCLEIC ACID-BINDING PROPERTIES

    T HIROSE, M SUGITA, M SUGIURA

    MOLECULAR AND GENERAL GENETICS Vol. 244 No. 4 p. 360-366 1994/08 Research paper (scientific journal)

  132. THE ROLC PROMOTER OF AGROBACTERIUM-RHIZOGENES RI PLASMID IS ACTIVATED BY SUCROSE IN TRANSGENIC TOBACCO PLANTS

    R YOKOYAMA, T HIROSE, N FUJII, ET ASPURIA, A KATO, H UCHIMIYA

    MOLECULAR & GENERAL GENETICS Vol. 244 No. 1 p. 15-22 1994/07 Research paper (scientific journal)

  133. CDNA STRUCTURE, EXPRESSION AND NUCLEIC ACID-BINDING PROPERTIES OF 3 RNA-BINDING PROTEINS IN TOBACCO - OCCURRENCE OF TISSUE-SPECIFIC ALTERNATIVE SPLICING

    T HIROSE, M SUGITA, M SUGIURA

    NUCLEIC ACIDS RESEARCH Vol. 21 No. 17 p. 3981-3987 1993/08 Research paper (scientific journal)

Misc. 51

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    日本分子生物学会年会プログラム・要旨集(Web) Vol. 44th 2021

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    月刊細胞 Vol. 53 No. 14 2021

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    二宮賢介, ALY Mahmoud Khamis, 坂口裕理子, 足達俊吾, 夏目徹, 岩切淳一, 寺井悟朗, 浅井潔, 鈴木勉, 廣瀬哲郎

    日本分子生物学会年会プログラム・要旨集(Web) Vol. 42nd 2019

  15. 核内ストレス体によるストレス回復期のスプライシング制御

    二宮賢介, 足達俊吾, 夏目徹, 岩切淳一, 寺井悟朗, 浅井潔, 廣瀬哲郎

    日本RNA学会年会要旨集 Vol. 20th 2018/07/09

  16. 核内ストレス体によるストレス回復期のスプライシング制御

    二宮賢介, 足達俊吾, 夏目徹, 岩切淳一, 寺井悟朗, 浅井潔, 廣瀬哲郎

    RNAフロンティアミーティング, 2018 2018

  17. ⻑鎖非コード RNA である NEAT1 の機能ドメインは相分離を介して核内構造体であるパラスペックルの形成をひき起こす

    山崎智弘, 廣瀬哲郎

    ライフサイエンス新着論文レビュー 2018 Article, review, commentary, editorial, etc. (other)

  18. 核内構造体パラスペックルはNEAT1 IncRNAの複数の機能ドメインにより構築される

    山崎 智弘, Souquere Sylvie, 木立 尚孝, Fox Archa, 中川 真一, Gerard Pierron, 廣瀬 哲郎

    生命科学系学会合同年次大会 Vol. 2017年度 p. [1P-0764] 2017/12

    Publisher: 生命科学系学会合同年次大会運営事務局
  19. 核内ストレス体の構成変化とストレス回復期におけるスプライシング制御

    二宮賢介, 足達俊吾, 夏目徹, 廣瀬哲郎

    日本RNA学会年会要旨集 Vol. 19th 2017/07/19

  20. Sam68核内構造体は,HNRNPLアダプターを介して2つのRNase感受性サブ構造体が融合してつくられる

    萬年太郎, 山下征輔, 富田耕造, 五島直樹, 廣瀬哲郎

    日本分子生物学会年会プログラム・要旨集(Web) Vol. 39th 2016

  21. NEAT1lncRNAの難溶性を考慮したパラスペックル構造因子の再定量と構造構築原理の探究

    中條岳志, 中川真一, 川口哲哉, 内匠透, 廣瀬哲郎

    日本生化学会大会(Web) Vol. 88回・38回 p. [2T25p-08(2P0765)] 2015/12

    Publisher: (公社)日本生化学会
  22. Close Up実験法 Series266 簡単RNA蛍光in situハイブリダイゼーション実験

    川口哲哉, 廣瀬哲郎, 中川真一

    実験医学 Vol. 33 No. 14 p. 2283-2289 2015/09

    Publisher: (株)羊土社
  23. RNase感受性スクリーニングにより同定された核内RNA顆粒の形成機構の解析

    萬年太郎, 五島直樹, 廣瀬哲郎

    日本生化学会大会(Web) Vol. 88th p. 2T25P-09(2P0766) (WEB ONLY)-09(2P0766)] 2015

    Publisher: (公社)日本生化学会
  24. PAR‐CLIP法を用いた核内RNA顆粒の構造構築RNAの探索

    萬年太郎, 五島直樹, 油谷浩幸, 塩見春彦, 廣瀬哲郎

    日本RNA学会年会要旨集 Vol. 16th 2014/07/23

  25. RNase感受性スクリーニングにより同定された核内RNA顆粒状構造体の解析

    萬年太郎, 五島直樹, 廣瀬哲郎

    日本RNA学会年会要旨集 Vol. 15th 2013/07/24

  26. 核内構造体パラスペックルはGAリッチな配列を含むイントロンを繋留している

    WEST Jason, 工樂樹洋, KINGSTON Robert, 廣瀬哲郎, 中川真一

    日本RNA学会年会要旨集 Vol. 15th 2013/07/24

  27. RNase感受性スクリーニングにより同定された核内RNA顆粒状構造体の解析

    萬年太郎, 五島直樹, 廣瀬哲郎

    日本分子生物学会年会プログラム・要旨集(Web) Vol. 36th 2013

  28. 小細胞肺がんでは長鎖非コードRNA、HOTAIRが細胞接着性に関係する遺伝子発現に影響を及ぼし再発と関連する(Long non-coding RNA HOTAIR affects cell adhesion- related gene expression in small cell lung cancer related to relapse)

    小野 宏, 長野 裕子, 宮内 栄作, 元井 紀子, 奥村 栄, 松浦 正明, 廣瀬 哲郎, 稲瀬 直彦, 石川 雄一

    日本癌学会総会記事 Vol. 71回 p. 422-422 2012/08

    Publisher: (一社)日本癌学会
  29. RNAに依存して形成される新規核内構造体の探索

    萬年太郎, 五島直樹, 廣瀬哲郎

    日本RNA学会年会要旨集 Vol. 14th 2012/07/18

  30. プロテアソーム阻害に応答した核内構造体noncoding RNAの転写抑制機能

    廣瀬哲郎, 谷川明恵, VIRNICCHI Giorgio, BENARD Marianne, 長沼孝雄, 佐々木保典, 中川真一, FOX Archa, PIRRON Gerard

    日本RNA学会年会要旨集 Vol. 14th 2012/07/18

  31. 核内構造体パラスペックルの骨格ncRNAであるNEAT1を欠損するマウスは早期に不妊になる

    中川真一, 廣瀬哲郎

    日本RNA学会年会要旨集 Vol. 14th 2012/07/18

  32. 肺小細胞がんにおけるHOTAIRの発現は術後再発と関連している

    小野 宏, 宮内 栄作, 佐藤 征二郎, 齋藤 雄一, 元井 紀子, 廣瀬 哲郎, 石川 雄一

    日本病理学会会誌 Vol. 101 No. 1 p. 258-258 2012/03

    Publisher: (一社)日本病理学会
  33. Emerging roles of noncoding RNAs in epigenomic regulation

    Vol. 235 No. 10 p. 1013-1018 2010/12/04

    Publisher: 医歯薬出版
  34. 核局在長塩基長非コードRNAであるMALAT-1の局在機構の解析

    宮川 隆, 水野 利恵, 中村 陽, 渡邉 和則, 廣瀬 哲郎, Randeep Rakwal, 柴藤 淳子, 増尾 好則, 井尻 憲一, 秋光 信佳

    日本生化学会大会・日本分子生物学会年会合同大会講演要旨集 Vol. 83回・33回 p. 4P-0797 2010/12

    Publisher: (公社)日本生化学会
  35. 核内構造構築に必要なnoncoding RNAの選択的3’末端プロセシングの分子機構

    長沼孝雄, 中川真一, 青木一真, 五島直樹, 佐々木保典, 廣瀬哲郎

    生化学 Vol. 83回・33回 p. 3P-0795 2010/12

    Publisher: (公社)日本生化学会
  36. 核内構造体noncoding RNAの選択的プロセシング制御機構

    長沼孝雄, 中川真一, 青木一真, 五島直樹, 佐々木保典, 廣瀬哲郎

    日本RNA学会年会要旨集 Vol. 12th 2010/07/27

  37. U7 snRNP新規構成タンパク質によるDNA複製阻害に応答したヒストン遺伝子転写抑制機構

    井手上賢, 足達俊吾, 夏目徹, 廣瀬哲郎

    日本RNA学会年会要旨集 Vol. 12th 2010/07/27

  38. エクソソームによって分解される二次構造保存ゲノムシンテニー領域由来非コードRNA群の解析

    迫田絵理, 光山統泰, 浅井潔, 浅井潔, 廣瀬哲郎

    生化学 2010

  39. U7snRNP新規構成タンパク質によるヒストン遺伝子の転写抑制機構

    井手上賢, 足達俊吾, 夏目徹, 廣瀬哲郎

    生化学 Vol. 83回・33回 p. ROMBUNNO.3P-0644-0644 2010

    Publisher: (公社)日本生化学会
  40. Possible involvement of snoRNA in alternative splicing regulation

    Protein, nucleic acid and enzyme Vol. 54 No. 16 p. 2049-2054 2009/12

    Publisher: 共立出版
  41. MENε/β ncRNAと新規構成タンパク質によるパラスペックル構造体の構築

    長沼孝雄, 永井美智, 五島直樹, 佐々木保典, 廣瀬哲郎

    日本RNA学会年会要旨集 Vol. 11th 2009/07/27

  42. 核局在型ノンコーディングRNAであるMALAT-1の解析

    秋光 信佳, 水野 利恵, 岡田 知子, 柴藤 淳子, 増尾 好則, Rakwal Randeep, 井尻 憲一, 廣瀬 哲郎

    日本薬学会年会要旨集 Vol. 129年会 No. 4 p. 157-157 2009/03

    Publisher: (公社)日本薬学会
  43. パラスペックル構造構築のためのnoncoding RNAと新規構成タンパク質の役割

    長沼孝雄, 永井美智, 五島直樹, 佐々木保典, 廣瀬哲郎

    日本分子生物学会年会講演要旨集 Vol. 32nd No. Vol.4 2009

  44. 核内構造構築を司る長鎖noncoding RNAの選択的3’末端形成を介した機能発現機構

    長沼孝雄, 佐々木保典, 中川真一, 廣瀬哲郎

    日本分子生物学会年会講演要旨集 Vol. 32nd No. Vol.1 2009

  45. Development of a plastid in vitro translation system prepared from tobacco non-photosynthetic cultured cells.

    IDEUE Takashi, HIROSE Tetsuro, SUGIURA Masahiro

    Vol. 40 p. s71-s71 1999/03

  46. Development of a chloroplast in vitro RNA editing system and the recognition mechanism of the specific editing site

    HIROSE Tetsuro, SUGIURA Masahiro

    Vol. 40 p. s71-s71 1999/03

  47. Extensive analysis of RNA editing sites in tobacco chloroplast transcripts

    KUSUMEGI Takahiro, HIROSE Tetsuro, SUGIURA Masahiro

    Vol. 21 p. 456-456 1998/12/01

  48. Development of a chloroplast in vitro RNA editing system

    HIROSE Tetsuro, SUGIURA Masahiro

    Vol. 21 p. 456-456 1998/12/01

  49. Analysis of the mechanism for translational initiation unique in chloroplasts

    IDEUE Takashi, HIROSE Teturo, SUGIURA Masahiro

    Vol. 21 p. 437-437 1998/12/01

  50. REGULATION OF PLASTID GENE EXPRESSION : NEW INSIGHTS INTO THE PLASTID GENETIC SYSTEM

    SUGITA Mamoru, HIROSE Tetsuro, SUGIURA Masahiro

    Vol. 39 p. S8-S8 1998/05

  51. Translational control mechanisms of chloroplast gene expression

    T Hirose, M Sugiura

    NIPPON NOGEIKAGAKU KAISHI-JOURNAL OF THE JAPAN SOCIETY FOR BIOSCIENCE BIOTECHNOLOGY AND AGROCHEMISTRY Vol. 71 No. 11 p. 1180-1182 1997/11 Book review, literature introduction, etc.

Presentations 12

  1. Thermo-sensing mechanisms underlying the temperature-dependent splicing control of nuclear stress bodies

    Tsuyoshi Ueno, Shungo Adachi, Ichiro Taniguchi, Nobuo Noda, Kensuke Ninomiya, Tetsuro Hirose

    第26回日本RNA学会年会 2025/07/10

  2. Functional analysis of HSATIII RNA-derived repetitive proteins

    Kensuke Ninomiya, Shungo Adachi, Tetsuro Hirose

    第26回日本RNA学会年会 2025/07/08

  3. SERIPH: A Refined Method for the Targeted Enrichment and Molecular Characterization of Semi-Extractable RNAs

    Naoko Fujiwara, Daiki Kohsoh, Junichi Iwakiri, Chao Zeng, Takeshi Chujo, Kiyoshi Asai, Michiaki Hamada, Tetsuro Hirose

    第26回日本RNA学会年会 2025/07/08

  4. In Vitro Approach to Decipher the Paraspeckle Micelle Structure

    Ichiro Taniguchi, Tomohiro Yamazaki, Tetsuro Hirose

    第26回日本RNA学会年会 2025/07/08

  5. Mechanism of the crucible function of nuclear stress bodies

    Japan-Australia Paraspeckle Meeting 2025/03/25

  6. Exploration of Functional lncRNAs by Customized CRISPRi Screening

    Japan-Australia Paraspeckle Meeting 2025/03/25

  7. In vitro approach to understand the paraspeckle micelle structure

    2025/03/25

  8. Architectural Noncoding RNAs as Blueprints for the Assembly of Functional Membraneless Organelles

    Tetsuro Hirose

    Japan-Australia Paraspeckle Meeting 2025/03/25

  9. Regulatory Mechanisms of Intracellular Organization and Gene Expression by Noncoding RNAs

    2022/05/20

  10. 非コードRNAによる細胞内構造構築

    廣瀬哲郎

    東京大学大学院新領域創成科学研究科セミナー 2022/05/20

  11. Construction mechanism of nuclear paraspeckle as an isolated RNP micell

    Tetsuro Hirose

    EMBO | EMBL Symposia: Cellular Mechanisms Driven by Liquid Phase Separation 2022/05/12

  12. Regulatory mechanisms of Intracellular Organization by noncoding RNAs

Institutional Repository 1

Content Published in the University of Osaka Institutional Repository (OUKA)
  1. The RNA helicase DDX39 contributes to the nuclear export of spliceosomal U snRNA by loading of PHAX onto RNA

    Taniguchi Ichiro, Hirose Tetsuro, Ohno Mutsuhito

    Nucleic Acids Research Vol. gkae622 2024/07/16