Microbiota-driven antitumour immunity mediated by dendritic cell migration.

Nina Yi-Tzu Lin, Shota Fukuoka, Shohei Koyama, Daisuke Motooka, Dieter M Tourlousse, Yuko Shigeno, Yuki Matsumoto, Hiroyuki Yamano, Kazutoshi Murotomi, Hideyuki Tamaki, Takuma Irie, Eri Sugiyama, Shogo Kumagai, Kota Itahashi, Tokiyoshi Tanegashima, Kaori Fujimaki, Sachiko Ito, Mariko Shindo, Takahiro Tsuji, Hiroaki Wake, Keisuke Watanabe, Yuka Maeda, Tomohiro Enokida, Makoto Tahara, Riu Yamashita, Takao Fujisawa, Motoo Nomura, Akihito Kawazoe, Koichi Goto, Toshihiko Doi, Kohei Shitara, Hiroyuki Mano, Yuji Sekiguchi, Shota Nakamura, Yoshimi Benno, Hiroyoshi Nishikawa

Nature　Vol. 644　No. 8078　p. 1058-1068　2025/08/01　Research paper (scientific journal)

OTUD3 prevents ulcerative colitis by inhibiting microbiota-mediated STING activation

Bo Li, Taiki Sakaguchi, Haruka Tani, Takayoshi Ito, Mari Murakami, Ryu Okumura, Masao Kobayashi, Daisuke Okuzaki, Daisuke Motooka, Hiroki Ikeuchi, Takayuki Ogino, Tsunekazu Mizushima, Seiichi Hirota, Yuriko Otake-Kasamoto, Toshihiro Kishikawa, Shota Nakamura, Kouji Kobiyama, Ken J. Ishii, Takao Hashiguchi, Taro Kawai, Etsushi Kuroda, Shinichiro Shinzaki, Wataru Ise, Tomohiro Kurosaki, Akira Kikuchi, Yoshihiko Tomofuji, Yukinori Okada, Kiyoshi Takeda, Hisako Kayama

SCIENCE IMMUNOLOGY　Vol. 10　No. 109　2025/07/18　Research paper (scientific journal)

Differences in gut microbiome between autosomal dominant polycystic kidney disease with and without intracranial aneurysms.

Tatsumaru Fukuda, Masatoshi Takagaki, Junya Kaimori, Daisuke Motooka, Shota Nakamura, Shuhei Kawabata, Hajime Nakamura, Tomohiko Ozaki, Ryota Nakagawa, Takaki Matsumura, Kunimasa Teranishi, Hiroki Yamazaki, Yoshitaka Isaka, Haruhiko Kishima

Scientific reports　Vol. 15　No. 1　p. 24204-24204　2025/07/07　Research paper (scientific journal)

Oral Pathobiont Streptococcus Anginosus Is Enriched in the Gut of Stroke Patients and Predicts 2-Year Cardiovascular Outcome.

Shuichi Tonomura, Yorito Hattori, Tomohiko Ishibashi, Shuhei Ikeda, Kotaro Noda, Tetsuya Chiba, Yuka Kato, Ryotaro Asano, Kazuki Fukuma, Yuko Edamoto-Taira, Daisuke Motooka, Tadakatsu Inagaki, Makoto Okazawa, Shota Nakamura, Masatoshi Koga, Kazunori Toyoda, Ryota Nomura, Kazuhiko Nakano, Robert P Friedland, Kiyoshi Takeda, Ryosuke Takahashi, Masafumi Ihara, Yoshikazu Nakaoka

Circulation journal : official journal of the Japanese Circulation Society　2025/06/05　Research paper (scientific journal)

High-resolution cryo-EM analysis visualizes hydrated type I and IV pilus structures from enterotoxigenic Escherichia coli.

Kazuki Kawahara, Hiroya Oki, Minato Iimori, Ryuki Muramoto, Tomoya Imai, Christoph Gerle, Hideki Shigematsu, Shigeaki Matsuda, Tetsuya Iida, Shota Nakamura

Structure (London, England : 1993)　Vol. 33　No. 6　p. 1040-1050　2025/06/05　Research paper (scientific journal)

Salivary microbiota and IgA responses are different in pre-diabetic individuals compared to normoglycemic controls.

Nahoko Kato-Kogoe, Kouji Tsuda, Asako Kudo, Shoichi Sakaguchi, Michi Omori, Eri Komori, Mayu Ohmichi, Wataru Hamada, Shota Nakamura, Takashi Nakano, Junko Tamaki, Takaaki Ueno

Frontiers in cellular and infection microbiology　Vol. 15　p. 1591285-1591285　2025/06　Research paper (scientific journal)

Gastrectomy-induced alterations in gut microbiota linked to changes in oral and gastric microbiota.

Eri Komori, Nahoko Kato-Kogoe, Yoshiro Imai, Shoichi Sakaguchi, Kohei Taniguchi, Michi Omori, Mayu Ohmichi, Wataru Hamada, Shota Nakamura, Takashi Nakano, Sang-Woong Lee, Takaaki Ueno

Frontiers in microbiology　Vol. 16　p. 1599503-1599503　2025/06　Research paper (scientific journal)

mlstverse-web: advancing real-time identification of mycobacteria from sputum using targeted sequencing NALC-Seq.

Yuki Matsumoto, Kiyoharu Fukushima, Shunran Zhang, Yuzy Fauzyah, Daisuke Motooka, Haruko Saito, June Yamauchi, Tadayoshi Nitta, Takuro Nii, Takanori Matsuki, Kazuyuki Tsujino, Keisuke Miki, Hiroshi Kida, Shota Nakamura

Functional & integrative genomics　Vol. 25　No. 1　p. 105-105　2025/05/21　Research paper (scientific journal)

Intestinal Foxl1+ cell-derived CXCL12 maintains epithelial homeostasis by modulating cellular metabolism.

Mayu Yagita-Sakamaki, Takayoshi Ito, Taiki Sakaguchi, Shuichi Shimma, Bo Li, Daisuke Okuzaki, Daisuke Motooka, Shota Nakamura, Koji Hase, Eiichiro Fukusaki, Akira Kikuchi, Takashi Nagasawa, Atsushi Kumanogoh, Kiyoshi Takeda, Hisako Kayama

International immunology　Vol. 37　No. 4　p. 235-250　2025/03/06　Research paper (scientific journal)

Catheter-related bloodstream infection by a newly proposed "Mycobacterium toneyamachuris" in a boy with B-cell precursor acute lymphoblastic leukemia.

Haruki Naruse, Noriyuki Watanabe, Atsuhiko Ohta, Yuuki Shimizu, Takashi Fukushima, Atsuko Watanabe, Tomohei Nakao, Yoshitada Taji, Yuki Matsumoto, Shota Nakamura, Yuriko Igarashi, Akiko Takaki, Satoshi Mitarai, Kotaro Mitsutake, Ryuhei Tanaka, Yasuhiro Ebihara

Diagnostic microbiology and infectious disease　Vol. 111　No. 3　p. 116626-116626　2025/03/01　Research paper (scientific journal)

Identification of 2 Novel Species, Mycobacterium novusgordonae and M. shingordonae.

Kazuki Hashimoto, Yuko Abe, Kiyoharu Fukushima, Yuki Matsumoto, Haruko Saito, Yuri Akamine, Takayuki Niitsu, June Yamauchi, Tadayoshi Nitta, Michio Tanaka, Takuro Nii, Takanori Matsuki, Daisuke Motooka, Kazuyuki Tsujino, Keisuke Miki, Kozo Morimoto, Atsushi Kumanogoh, Shizuo Akira, Shota Nakamura, Hiroshi Kida

Emerging infectious diseases　Vol. 31　No. 3　p. 624-627　2025/03　Research paper (scientific journal)

Comparative analysis of gut microbiota in hormone-sensitive and castration-resistant prostate cancer in Japanese men.

Saizo Fujimoto, Koji Hatano, Eri Banno, Daisuke Motooka, Marco Antonio De Velasco, Yurie Kura, Shingo Toyoda, Mamoru Hashimoto, Shogo Adomi, Takafumi Minami, Kazuhiro Yoshimura, Toshiki Oka, Junya Hata, Makoto Matsushita, Tetsuya Takao, Shingo Takada, Akira Tsujimura, Yasuyuki Kojima, Wataru Obara, Shota Nakamura, Hirotsugu Uemura, Norio Nonomura, Kazutoshi Fujita

Cancer science　Vol. 116　No. 2　p. 462-469　2025/02/01　Research paper (scientific journal)

Variability of macrolide-resistant profile in Mycobacterium avium complex pulmonary disease.

Kiyoharu Fukushima, Yuki Matsumoto, Yuko Abe, Kazuki Hashimoto, Daisuke Motooka, Seigo Kitada, Haruko Saito, Sho Komukai, Eriko Fukui, Takayuki Niitsu, Hiroshi Nabeshima, Yasuharu Nagahama, June Yamauchi, Tadayoshi Nitta, Takuro Nii, Takanori Matsuki, Kazuyuki Tsujino, Keisuke Miki, Yasushi Shintani, Atsushi Kumanogoh, Shizuo Akira, Shota Nakamura, Hiroshi Kida

Antimicrobial agents and chemotherapy　Vol. 68　No. 11　2024/11/06　Research paper (scientific journal)

A plasmid-mediated type III secretion system associated with invasiveness and diarrheagenicity of Providencia rustigianii.

Jayedul Hassan, Atsushi Hinenoya, Noritoshi Hatanaka, Sharda Prasad Awasthi, Goutham Belagula Manjunath, Nahid Rahman, Jyoji Yamate, Shota Nakamura, Daisuke Motooka, Akira Nagita, Shah M Faruque, Shinji Yamasaki

mBio　Vol. 15　No. 10　2024/10/16　Research paper (scientific journal)

Cases of endophthalmitis caused by Candida albicans and Candida dubliniensis identified via internal transcribed spacer deep sequencing.

Kazunobu Asao, Noriyasu Hashida, Kazuichi Maruyama, Daisuke Motooka, Shota Nakamura, Kohji Nishida

BMC ophthalmology　Vol. 24　No. 1　p. 444-444　2024/10/09　Research paper (scientific journal)

Identification of causative fungus from sterile abscess using metagenomics followed by in situ hybridization.

Hiroya Oki, Ryotaro Niwa, Somboonthum Pranee, Daisuke Motooka, Yoshiyuki Onda, Jun Nakata, Hiroko Nakajima, Yoshihiro Oka, Haruo Sugiyama, Yuka Yoshii, Naoyuki Anzai, Shota Nakamura, Tetsuya Iida

Access microbiology　Vol. 6　No. 8　2024/08/01　Research paper (scientific journal)

Far-East Asian Toxoplasma isolates share ancestry with North and South/Central American recombinant lineages.

Fumiaki Ihara, Hisako Kyan, Yasuhiro Takashima, Fumiko Ono, Kei Hayashi, Tomohide Matsuo, Makoto Igarashi, Yoshifumi Nishikawa, Kenji Hikosaka, Hirokazu Sakamoto, Shota Nakamura, Daisuke Motooka, Kiyoshi Yamauchi, Madoka Ichikawa-Seki, Shinya Fukumoto, Motoki Sasaki, Hiromi Ikadai, Kodai Kusakisako, Yuma Ohari, Ayako Yoshida, Miwa Sasai, Michael E Grigg, Masahiro Yamamoto

Nature communications　Vol. 15　No. 1　p. 4278-4278　2024/05/22　Research paper (scientific journal)

Turicibacter faecis sp. nov., isolated from faeces of heart failure mouse model.

Yuko Imamura, Daisuke Motooka, Yuri Nakajima, Shin Ito, Masafumi Kitakaze, Tetsuya Iida, Shota Nakamura

International journal of systematic and evolutionary microbiology　Vol. 74　No. 5　2024/05/01　Research paper (scientific journal)

IncA/C plasmid encoding blaCTX-M-55 in non-O1 Vibrio cholerae isolates from the edible river fish Mastacembelus sp.

Takahiro Yamaguchi, Michio Jinnai, Doan Tran Nguyen Minh, Oanh Nguyen Hoang, Hien Le Thi, Phong Ngo Thanh, Phuong Hoang Hoai, Phuc Nguyen Do, Chinh Dang Van, Daisuke Motooka, Shota Nakamura, Yuko Kumeda, Atsushi Hase, Tatsuya Nakayama

Microbiology resource announcements　Vol. 13　No. 3　2024/03/12　Research paper (scientific journal)

Downregulation of TCF7 and LEF1 is a key determinant of tumor-infiltrating regulatory T-cell function.

Yujiro Kidani, Yohko Kitagawa, Masaki Hagiwara, Atsunari Kawashima, Takayuki Kanazawa, Hisashi Wada, Motohide Uemura, Norio Nonomura, Daisuke Motooka, Shota Nakamura, Naganari Ohkura, Shimon Sakaguchi

International immunology　Vol. 36　No. 4　p. 167-182　2024/03/09　Research paper (scientific journal)

The UDP-glucose/P2Y14 receptor axis promotes eosinophil-dependent large intestinal inflammation.

Li Liu, Takayoshi Ito, Bo Li, Haruka Tani, Daisuke Okuzaki, Daisuke Motooka, Hazuki Miyazaki, Takayuki Ogino, Shota Nakamura, Kiyoshi Takeda, Hisako Kayama

International immunology　Vol. 36　No. 4　p. 155-166　2024/03/09　Research paper (scientific journal)

肺非結核性抗酸菌症 肺Mycobacterium avium complex症におけるマクロライド耐性化の可塑性

安部 祐子, 福島 清春, 松本 悠希, 北田 清悟, 元岡 大祐, 新津 敬之, 新居 卓朗, 松本 隆典, 熊ノ郷 淳, 中村 昇太, 木田 博

日本呼吸器学会誌　Vol. 13　No. 増刊　p. 188-188　2024/03

ゲノム解析が紐解くMycobacterium gordonae症の多様性

安部 祐子, 福島 清春, 松本 悠希, 松木 隆典, 元岡 大祐, 新津 敬之, 辻野 和之, 三木 啓資, 熊ノ郷 淳, 中村 昇太, 木田 博

日本呼吸器学会誌　Vol. 13　No. 増刊　p. 324-324　2024/03

リアルタイムコアゲノム解析による非結核性抗酸菌症の迅速・高精度同定法の確立および臨床応用

新居 卓朗, 福島 清春, 松本 悠希, 松木 隆典, 元岡 大祐, 辻野 和之, 三木 啓資, 熊ノ郷 淳, 中村 昇太, 木田 博

日本呼吸器学会誌　Vol. 13　No. 増刊　p. 324-324　2024/03

炎症・感染とこれからの眼科診療 眼内免疫システムの発達と免疫疾患発症における常在細菌との相互関係解明への挑戦

丸山 和一, 白木 暢彦, 浅尾 和伸, 橋田 徳康, 片山 朋彦, 林 竜平, 前田 直之, 西田 幸二, 村川 泰裕, 小口 綾貴子, 元岡 大祐, 中村 昇太, 臼井 嘉彦, 小松 紘之, 禰津 直也, 朝蔭 正樹, 後藤 浩, 西口 康二, 大沼 一彦

日本眼科学会雑誌　Vol. 128　No. 3　p. 256-281　2024/03

Dysbiosis of gut microbiota in patients with severe COVID-19.

Kentaro Shimizu, Haruhiko Hirata, Natsuko Tokuhira, Daisuke Motooka, Shota Nakamura, Akiko Ueda, Jotaro Tachino, Moe Koide, Akinori Uchiyama, Hiroshi Ogura, Jun Oda

Acute medicine & surgery　Vol. 11　No. 1　2024/01　Research paper (scientific journal)

Detection of chromosome-mediated blaNDM-1-carrying Aeromonas spp. in the intestinal contents of fresh water river fish in Ho Chi Minh City, Vietnam.

Takahiro Yamaguchi, Masaharu Yokota, Michio Jinnai, Doan Tran Nguyen Minh, Oanh Nguyen Hoang, Hien Le Thi, Phong Ngo Thanh, Phuong Hoang Hoai, Phuc Nguyen Do, Chinh Dang Van, Daisuke Motooka, Shota Nakamura, Ryuji Kawahara, Yuko Kumeda, Atsushi Hase, Tatsuya Nakayama

Marine pollution bulletin　Vol. 198　p. 115812-115812　2024/01/01　Research paper (scientific journal)

Adult-onset botulism in a Japanese woman with prolonged spore excretion.

Keigo Kihara, Yuta Kajiyama, Yasuyoshi Kimura, Shuhei Okazaki, Naoya Esa, Ryosuke Nobe, Kentaro Shimizu, Kiyoshi Ohno, Daisuke Motooka, Takuhiro Matsumura, Takeshi Shimazu, Shota Nakamura, Yukako Fujinaga, Hideki Mochizuki

Journal of infection and chemotherapy : official journal of the Japan Society of Chemotherapy　Vol. 29　No. 12　p. 1172-1176　2023/12　Research paper (scientific journal)

Analysis of gut microbiome, host genetics, and plasma metabolites reveals gut microbiome-host interactions in the Japanese population.

Yoshihiko Tomofuji, Toshihiro Kishikawa, Kyuto Sonehara, Yuichi Maeda, Kotaro Ogawa, Shuhei Kawabata, Eri Oguro-Igashira, Tatsusada Okuno, Takuro Nii, Makoto Kinoshita, Masatoshi Takagaki, Kenichi Yamamoto, Noriko Arase, Mayu Yagita-Sakamaki, Akiko Hosokawa, Daisuke Motooka, Yuki Matsumoto, Hidetoshi Matsuoka, Maiko Yoshimura, Shiro Ohshima, Shota Nakamura, Manabu Fujimoto, Hidenori Inohara, Haruhiko Kishima, Hideki Mochizuki, Kiyoshi Takeda, Atsushi Kumanogoh, Yukinori Okada

Cell reports　Vol. 42　No. 11　p. 113324-113324　2023/11/28　Research paper (scientific journal)

高齢で発症し,完全閉じ込め症候群を呈したボツリヌス症の一例

木原 圭梧, 梶山 裕太, 木村 康義, 岡崎 周平, 望月 秀樹, 江左 尚哉, 野邊 亮丞, 清水 健太郎, 嶋津 岳士, 大野 喜代志, 元岡 大祐, 中村 昇太, 松村 拓大, 藤永 由佳子, 余野木 伸哉, 河合 高生, 加藤 弘子, 永井 仁美, 谷掛 千里, 妹尾 充敏, 加藤 はる

病原微生物検出情報月報　Vol. 44　No. 11　p. 184-185　2023/11

Non-tuberculosis Mycobacterial Pulmonary Disease Caused by Mycobacterium kiyosense, a New Species.

Kotaro Yamada, Takafumi Koyauchi, Koshi Yokomura, Taiga Fujita, Hiroki Sugiyama, Ryo Shimota, Nobuhiro Shimura, Yuki Matsumoto, Shota Nakamura, Kinuyo Chikamatsu, Satoshi Mitarai, Takafumi Suda

Internal medicine (Tokyo, Japan)　Vol. 63　No. 13　p. 1913-1916　2023/11/01　Research paper (scientific journal)

前立腺癌患者の腸内細菌叢のショットガンメタゲノム解析

藤田 和利, 波多野 浩士, 友藤 嘉彦, 岡 利樹, 松下 慎, 西本 光寿, 秦 淳也, 辻村 晃, 小原 航, 林 裕次郎, 井之口 舜亮, 中村 昇太, 岡田 随象, 植村 天受, 野々村 祝夫

日本癌治療学会学術集会抄録集　Vol. 61回　p. O48-1　2023/10

Sialylation shapes mucus architecture inhibiting bacterial invasion in the colon.

Mugen Taniguchi, Ryu Okumura, Takahisa Matsuzaki, Ayaka Nakatani, Kei Sakaki, Shota Okamoto, Airi Ishibashi, Haruka Tani, Momoka Horikiri, Naritaka Kobayashi, Hiroshi Y Yoshikawa, Daisuke Motooka, Daisuke Okuzaki, Shota Nakamura, Toshiyuki Kida, Akihiko Kameyama, Kiyoshi Takeda

Mucosal immunology　Vol. 16　No. 5　p. 624-641　2023/10　Research paper (scientific journal)

Fungal dysbiosis and decreased tear mucin at the conjunctiva in patients with conjunctival mucosa-associated lymphoid tissue lymphoma.

Kazunobu Asao, Noriyasu Hashida, Daisuke Motooka, Teruhisa Tsukamoto, Shota Nakamura, Kazuichi Maruyama, Kohji Nishida

BMJ open ophthalmology　Vol. 8　No. 1　p. e001360-e001360　2023/09/30　Research paper (scientific journal)

Changes in salivary microbiota due to gastric cancer resection and its relation to gastric fluid microbiota.

Eri Komori, Nahoko Kato-Kogoe, Yoshiro Imai, Shoichi Sakaguchi, Kohei Taniguchi, Michi Omori, Mayu Ohmichi, Shota Nakamura, Takashi Nakano, Sang-Woong Lee, Takaaki Ueno

Scientific reports　Vol. 13　No. 1　p. 15863-15863　2023/09/22　Research paper (scientific journal)

Alteration of microbial composition in the skin and blood in vasculitis.

Ryujin Miyata, Chie Miyabe, Hiroya Oki, Daisuke Motooka, Shota Nakamura, Yoshishige Miyabe, Yuko Takenaka, Yasuko Fukuya, Kazuo Yudo, Naoko Ishiguro

Scientific reports　Vol. 13　No. 1　p. 15317-15317　2023/09/15　Research paper (scientific journal)

A cell wall synthase accelerates plasma membrane partitioning in mycobacteria.

Takehiro Kado, Zarina Akbary, Daisuke Motooka, Ian L Sparks, Emily S Melzer, Shota Nakamura, Enrique R Rojas, Yasu S Morita, M Sloan Siegrist

eLife　Vol. 12　2023/09/04　Research paper (scientific journal)

前立腺癌患者の腸内細菌叢のショットガンメタゲノム解析(Shotgun analysis of gut microbiome in men with prostate cancer)

藤田 和利, 波多野 浩士, 友藤 嘉彦, 岡 利樹, 松下 慎, 西本 光寿, 秦 淳也, 辻村 晃, 小原 航, 林 裕次郎, 井之口 舜亮, 中村 昇太, 岡田 随象, 植村 天受, 野々村 祝夫

日本癌学会総会記事　Vol. 82回　p. 868-868　2023/09

Comparative evaluation of 16S rRNA metagenomic sequencing in the diagnosis and understanding of bacterial endophthalmitis.

Kazunobu Asao, Noriyasu Hashida, Kazuichi Maruyama, Daisuke Motooka, Teruhisa Tsukamoto, Yoshihiko Usui, Shota Nakamura, Kohji Nishida

BMJ open ophthalmology　Vol. 8　No. 1　2023/09/01　Research paper (scientific journal)

高脂肪食によるディスバイオシスが前立腺癌に及ぼす影響の解明

松下 慎, 藤田 和利, 林 拓自, 香山 尚子, 元岡 大祐, 長谷 拓明, 山本 顕生, 植村 俊彦, 山道 岳, 冨山 栄輔, 洪 陽子, 加藤 大悟, 波多野 浩士, 河嶋 厚成, 植村 元秀, 野島 聡, 今村 亮一, 辻川 和丈, 中村 昇太, 竹田 潔, 森井 英一, 野々村 祝夫

泌尿器外科　Vol. 36　No. 8　p. 895-896　2023/08

Multiple mutations of Mycobacterium intracellulare subsp. chimaera causing false-negative reaction to the transcription-reverse transcription concerted method for pathogen detection.

Atsushi Togawa, Kinuyo Chikamatsu, Akiko Takaki, Yuki Matsumoto, Michinobu Yoshimura, Shigeo Tsuchiya, Shota Nakamura, Satoshi Mitarai

International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases　Vol. 133　p. 14-17　2023/08　Research paper (scientific journal)

MGIT-seqによる非結核性抗酸菌における菌株と薬剤耐性の同定

新津 敬之, 福島 清春, 松本 悠希, 松木 隆則, 齋藤 晴子, 元岡 大祐, 小向 翔, 福井 絵理子, 山内 寿里, 新田 忠義, 安部 祐子, 鍋島 弘嗣, 永濱 康晴, 新居 卓郎, 辻野 和之, 三木 啓資, 北田 清悟, 熊ノ郷 淳, 審良 静男, 中村 昇太, 木田 博

結核　Vol. 98　No. 4　p. 140-140　2023/06

マクロライド耐性肺Mycobacterium avium complex症における耐性化の可塑性と治療選択

安部 祐子, 福島 清春, 松本 悠希, 北田 清悟, 元岡 大祐, 新津 敬之, 新居 卓郎, 松木 隆則, 熊ノ郷 淳, 中村 昇太, 木田 博

結核　Vol. 98　No. 4　p. 143-143　2023/06

Reconstruction of the personal information from human genome reads in gut metagenome sequencing data.

Yoshihiko Tomofuji, Kyuto Sonehara, Toshihiro Kishikawa, Yuichi Maeda, Kotaro Ogawa, Shuhei Kawabata, Takuro Nii, Tatsusada Okuno, Eri Oguro-Igashira, Makoto Kinoshita, Masatoshi Takagaki, Kenichi Yamamoto, Takashi Kurakawa, Mayu Yagita-Sakamaki, Akiko Hosokawa, Daisuke Motooka, Yuki Matsumoto, Hidetoshi Matsuoka, Maiko Yoshimura, Shiro Ohshima, Shota Nakamura, Hidenori Inohara, Haruhiko Kishima, Hideki Mochizuki, Kiyoshi Takeda, Atsushi Kumanogoh, Yukinori Okada

Nature microbiology　Vol. 8　No. 6　p. 1079-1094　2023/06　Research paper (scientific journal)

Genetic and phenotypic analyses of mcr-harboring extended-spectrum β-lactamase-producing Escherichia coli isolates from companion dogs and cats in Japan.

Mayo Yasugi, Shingo Hatoya, Daisuke Motooka, Daisuke Kondo, Hideo Akiyoshi, Masayuki Horie, Shota Nakamura, Terumasa Shimada

Veterinary microbiology　Vol. 280　p. 109695-109695　2023/05/01　Research paper (scientific journal)

Tuberculostearic Acid Controls Mycobacterial Membrane Compartmentalization.

Malavika Prithviraj, Takehiro Kado, Jacob A Mayfield, David C Young, Annie D Huang, Daisuke Motooka, Shota Nakamura, M Sloan Siegrist, D Branch Moody, Yasu S Morita

mBio　Vol. 14　No. 2　2023/04/25　Research paper (scientific journal)

Seasonal variations in gut microbiota and disease course in patients with inflammatory bowel disease.

Mizuki Tani, Shinichiro Shinzaki, Akiko Asakura, Taku Tashiro, Takahiro Amano, Yuriko Otake-Kasamoto, Takeo Yoshihara, Shunsuke Yoshii, Yoshiki Tsujii, Yoshito Hayashi, Takahiro Inoue, Daisuke Motooka, Shota Nakamura, Hideki Iijima, Tetsuo Takehara

PloS one　Vol. 18　No. 4　2023/04/18　Research paper (scientific journal)

高齢者男性の血中テストとステロン値に関係する腸内細菌叢の検討(Gut Microbiome corelated with Blood Testosterone Levels in Elderly Men)

藤田 和利, 松下 慎, 波多野 浩士, 秦 淳也, 吉山 あずさ, 兼平 貢, 西本 光寿, 福原 慎一郎, 南 高文, 中村 昇太, 吉村 一宏, 野々村 祝夫, 植村 天受

日本泌尿器科学会総会　Vol. 110回　p. AOP01-04　2023/04

Impact of G29179T mutation on two commercial PCR assays for SARS-CoV-2 detection

Wakaki Kami, Takeshi Kinjo, Hiroe Hashioka, Wakako Arakaki, Kohei Uechi, Ami Takahashi, Hiroya Oki, Kentaro Tanaka, Daisuke Motooka, Shota Nakamura, Masashi Nakamatsu, Shiro Maeda, Kazuko Yamamoto, Jiro Fujita

Journal of Virological Methods　Vol. 314　2023/04/01　Research paper (scientific journal)

Gut dysbiosis is associated with aortic aneurysm formation and progression in Takayasu arteritis.

Yusuke Manabe, Tomohiko Ishibashi, Ryotaro Asano, Shuichi Tonomura, Yuichi Maeda, Daisuke Motooka, Jin Ueda, Masahiro Yanagawa, Yuko Edamoto-Taira, Tomomi Chikaishi-Kirino, Takeshi Masaki, Tadakatsu Inagaki, Shota Nakamura, Yoshinori Katada, Makoto Okazawa, Masashi Narazaki, Takeshi Ogo, Atsushi Kumanogoh, Yoshikazu Nakaoka

Arthritis research & therapy　Vol. 25　No. 1　p. 46-46　2023/03/24　Research paper (scientific journal)

MGIT-seq for the Identification of Nontuberculous Mycobacteria and Drug Resistance: a Prospective Study.

Kiyoharu Fukushima, Yuki Matsumoto, Takanori Matsuki, Haruko Saito, Daisuke Motooka, Sho Komukai, Eriko Fukui, June Yamuchi, Tadayoshi Nitta, Takayuki Niitsu, Yuko Abe, Hiroshi Nabeshima, Yasuharu Nagahama, Takuro Nii, Kazuyuki Tsujino, Keisuke Miki, Seigo Kitada, Atsushi Kumanogoh, Shizuo Akira, Shota Nakamura, Hiroshi Kida

Journal of clinical microbiology　Vol. 61　No. 4　2023/03/22　Research paper (scientific journal)

肺NTM症 治療 マクロライド耐性肺Mycobacterium avium complex法における耐性化の可塑性と治療選択

安部 祐子, 福島 清春, 松本 悠希, 北田 清悟, 元岡 大祐, 新津 敬之, 新居 卓朗, 松木 隆典, 熊ノ郷 淳, 中村 昇太, 木田 博

日本呼吸器学会誌　Vol. 12　No. 増刊　p. 197-197　2023/03

Rapid and Comprehensive Identification of Nontuberculous Mycobacteria.

Yuki Matsumoto, Shota Nakamura

Methods in molecular biology (Clifton, N.J.)　Vol. 2632　p. 247-255　2023/02/14　Research paper (scientific journal)

分類・疫学・感染症 COVID-19の重症度における腸内細菌叢とmycobiotaの経時的変化(Taxonomy/Epidemiology/Infectious diseases Longitudinal alterations of the gut microbiota and mycobiota on COVID-19 severity)

元岡 大祐, 前田 悠一, 沖 大也, 田中 健太郎, 猪頭 英里, 平田 晴彦, 木田 博, 熊ノ郷 淳, 中村 昇太, 竹田 潔

日本細菌学雑誌　Vol. 78　No. 1　p. 40-40　2023/02

Genomic repertoires linked with pathogenic potency of arthritogenic Prevotella copri isolated from the gut of patients with rheumatoid arthritis.

Takuro Nii, Yuichi Maeda, Daisuke Motooka, Mariko Naito, Yuki Matsumoto, Takao Ogawa, Eri Oguro-Igashira, Toshihiro Kishikawa, Makoto Yamashita, Satoshi Koizumi, Takashi Kurakawa, Ryu Okumura, Hisako Kayama, Mari Murakami, Taiki Sakaguchi, Bhabatosh Das, Shota Nakamura, Yukinori Okada, Atsushi Kumanogoh, Kiyoshi Takeda

Annals of the rheumatic diseases　Vol. 82　No. 5　p. 621-629　2023/01/10　Research paper (scientific journal)

Characterization of Oral Microbiota Following Chemotherapy in Patients With Hematopoietic Malignancies.

Michi Omori, Nahoko Kato-Kogoe, Shoichi Sakaguchi, Eri Komori, Kazuya Inoue, Kayoko Yamamoto, Wataru Hamada, Tomoyoshi Hayase, Tomoyuki Tano, Shota Nakamura, Takashi Nakano, Hidenori Une, Takaaki Ueno

Integrative cancer therapies　Vol. 22　p. 1.53474E+16-1.53474E+16　2023/01/01　Research paper (scientific journal)

Prokaryotic and viral genomes recovered from 787 Japanese gut metagenomes revealed microbial features linked to diets, populations, and diseases.

Yoshihiko Tomofuji, Toshihiro Kishikawa, Yuichi Maeda, Kotaro Ogawa, Yuriko Otake-Kasamoto, Shuhei Kawabata, Takuro Nii, Tatsusada Okuno, Eri Oguro-Igashira, Makoto Kinoshita, Masatoshi Takagaki, Naoki Oyama, Kenichi Todo, Kenichi Yamamoto, Kyuto Sonehara, Mayu Yagita, Akiko Hosokawa, Daisuke Motooka, Yuki Matsumoto, Hidetoshi Matsuoka, Maiko Yoshimura, Shiro Ohshima, Shinichiro Shinzaki, Shota Nakamura, Hideki Iijima, Hidenori Inohara, Haruhiko Kishima, Tetsuo Takehara, Hideki Mochizuki, Kiyoshi Takeda, Atsushi Kumanogoh, Yukinori Okada

Cell genomics　Vol. 2　No. 12　p. 100219-100219　2022/12/14　Research paper (scientific journal)

Localization and potential role of prostate microbiota

Koichi Okada, Kentaro Takezawa, Go Tsujimura, Takahiro Imanaka, Sohei Kuribayashi, Norichika Ueda, Koji Hatano, Shinichiro Fukuhara, Hiroshi Kiuchi, Kazutoshi Fujita, Daisuke Motooka, Shota Nakamura, Yoshihisa Koyama, Shoichi Shimada, Norio Nonomura

Frontiers in Cellular and Infection Microbiology　Vol. 12　p. 1048319-1048319　2022/12/07　Research paper (scientific journal)

Prolonged gut microbial alterations in post-transplant survivors of allogeneic haematopoietic stem cell transplantation.

Akihisa Hino, Kentaro Fukushima, Shinsuke Kusakabe, Tomoaki Ueda, Takao Sudo, Jiro Fujita, Daisuke Motooka, Aya K Takeda, Natsuko O Shinozaki, Satoshi Watanabe, Takafumi Yokota, Hirohiko Shibayama, Shota Nakamura, Naoki Hosen

British journal of haematology　Vol. 201　No. 4　p. 725-737　2022/12/05　Research paper (scientific journal)

Metagenomic analysis of diarrheal stools in Kolkata, India, indicates the possibility of subclinical infection of Vibrio cholerae O1

Eizo Takahashi, Daisuke Motooka, Shota Nakamura, Shin-ichi Miyoshi, Goutam Chowdhury, Asish K. Mukhopadhyay, Shanta Dutta, Daichi Morita, Tetsuya Iida, Keinosuke Okamoto

Scientific Reports　Vol. 12　No. 1　p. 19473-19473　2022/11/14　Research paper (scientific journal)

Structural basis for the toxin-coregulated pilus–dependent secretion of Vibrio cholerae colonization factor

Hiroya Oki, Kazuki Kawahara, Minato Iimori, Yuka Imoto, Haruka Nishiumi, Takahiro Maruno, Susumu Uchiyama, Yuki Muroga, Akihiro Yoshida, Takuya Yoshida, Tadayasu Ohkubo, Shigeaki Matsuda, Tetsuya Iida, Shota Nakamura

Science Advances　Vol. 8　No. 41　2022/10/14　Research paper (scientific journal)

Genomic differences between sequence types 1 and 104 of Streptococcus suis Serotype 2.

Anusak Kerdsin, Dan Takeuchi, Yukihiro Akeda, Shota Nakamura, Marcelo Gottschalk, Kazunori Oishi

PeerJ　Vol. 10　2022/10/06　Research paper (scientific journal)

Salivary Microbiota Associated with Peripheral Microvascular Endothelial Dysfunction.

Nahoko Kato-Kogoe, Kuniyasu Kamiya, Shoichi Sakaguchi, Michi Omori, Eri Komori, Asako Kudo, Shota Nakamura, Takashi Nakano, Takaaki Ueno, Junko Tamaki, Masaoki Hoshiga

Journal of atherosclerosis and thrombosis　Vol. 30　No. 7　p. 820-833　2022/09/22　Research paper (scientific journal)

A fatal case of hemophagocytic lymphohistiocytosis associated with gestational psittacosis without symptoms of pneumonia.

Michinobu Yoshimura, Kanako Shimizu, Yukiko Nakura, Kazumi Kawahara, Harutaka Katano, Daisuke Motooka, Makoto Takeuchi, Kisaburo Nagamune, Yoshiaki Imamura, Shota Nakamura, Kiyoshi Yasukawa, Hideki Hasegawa, Yoshio Yoshida, Itaru Yanagihara

The journal of obstetrics and gynaecology research　Vol. 48　No. 12　p. 3325-3330　2022/09/12　Research paper (scientific journal)

腸内細菌叢由来LPSはヒスタミンH1受容体シグナル経路を介して前立腺癌増殖を促進する(Lipopolysaccharide from gut microhiota promotes prostate cancer growth through histamine III receptor signaling)

藤田 和利, 松下 慎, 元岡 大祐, 長谷 拓明, 加藤 大悟, 波多野 浩士, 河嶋 厚成, 南 高文, マルコ・デベラスコ, 吉村 一宏, ジョージ・ネットー, 辻川 和丈, 中村 昇太, 森井 英一, 植村 天受, 野々村 祝夫

日本癌学会総会記事　Vol. 81回　p. E-3077　2022/09

High-fat diet promotes prostate cancer growth through histamine signaling.

Makoto Matsushita, Kazutoshi Fujita, Koji Hatano, Takuji Hayashi, Hisako Kayama, Daisuke Motooka, Hiroaki Hase, Akinaru Yamamoto, Toshihiko Uemura, Gaku Yamamichi, Eisuke Tomiyama, Yoko Koh, Taigo Kato, Atsunari Kawashima, Motohide Uemura, Satoshi Nojima, Ryoichi Imamura, Aysha Mubeen, George J Netto, Kazutake Tsujikawa, Shota Nakamura, Kiyoshi Takeda, Eiichi Morii, Norio Nonomura

International journal of cancer　Vol. 151　No. 4　p. 623-636　2022/08/15　Research paper (scientific journal)

腸内細菌による前立腺癌増殖制御メカニズムの解明

松下 慎, 藤田 和利, 林 拓自, 香山 尚子, 元岡 大祐, 長谷 拓明, 神宮司 健太郎, 山本 顕生, 植村 俊彦, 山道 岳, 冨山 栄輔, 洪 陽子, 加藤 大悟, 波多野 浩士, 河嶋 厚成, 植村 元秀, 今村 亮一, 辻川 和丈, 中村 昇太, 竹田 潔, 野々村 祝夫

泌尿器外科　Vol. 35　No. 8　p. 858-859　2022/08

高齢男性における腸内細菌と血中総テストステロン値との関連

西本 光寿, 藤田 和利, 松下 慎, 元岡 大祐, 波多野 浩士, 坂野 恵里, 秦 淳也, 福原 慎一郎, 中村 昇太, 南 高文, 吉村 一宏, 小原 航, 辻村 晃, 野々村 祝夫, 植村 天受

日本性機能学会雑誌　Vol. 37　No. 2　p. 137-137　2022/08

高齢男性における腸内細菌と血中総テストステロン値との関連

西本 光寿, 藤田 和利, 松下 慎, 元岡 大祐, 波多野 浩士, 坂野 恵里, 秦 淳也, 福原 慎一郎, 中村 昇太, 南 高文, 吉村 一宏, 小原 航, 辻村 晃, 野々村 祝夫, 植村 天受

日本性機能学会雑誌　Vol. 37　No. 2　p. 137-137　2022/08

腸内細菌による前立腺癌増殖制御メカニズムの解明

松下 慎, 藤田 和利, 林 拓自, 香山 尚子, 元岡 大祐, 長谷 拓明, 神宮司 健太郎, 山本 顕生, 植村 俊彦, 山道 岳, 冨山 栄輔, 洪 陽子, 加藤 大悟, 波多野 浩士, 河嶋 厚成, 植村 元秀, 今村 亮一, 辻川 和丈, 中村 昇太, 竹田 潔, 野々村 祝夫

泌尿器外科　Vol. 35　No. 8　p. 858-859　2022/08

Exacerbation of non-steroidal anti-inflammatory drug-induced enteropathy in C-C chemokine receptor type 7-deficient mice.

Toshio Yamaguchi, Hideki Iijima, Takeo Yoshihara, Mizuki Tani, Yuriko Otake, Shuko Iwatani, Takahiro Amano, Taku Tashiro, Tomohide Kurahashi, Takanori Inoue, Yoshiki Tsujii, Yoshito Hayashi, Takahiro Inoue, Daisuke Motooka, Shota Nakamura, Shinichiro Shinzaki, Tetsuo Takehara

Journal of gastroenterology and hepatology　Vol. 37　No. 8　p. 1561-1570　2022/08/01　Research paper (scientific journal)

Lysophosphatidylserines derived from microbiota in Crohn's disease elicit pathological Th1 response.

Yuriko Otake-Kasamoto, Hisako Kayama, Toshihiro Kishikawa, Shinichiro Shinzaki, Taku Tashiro, Takahiro Amano, Mizuki Tani, Takeo Yoshihara, Bo Li, Haruka Tani, Li Liu, Akio Hayashi, Daisuke Okuzaki, Daisuke Motooka, Shota Nakamura, Yukinori Okada, Hideki Iijima, Kiyoshi Takeda, Tetsuo Takehara

The Journal of experimental medicine　Vol. 219　No. 7　2022/07/04　Research paper (scientific journal)

Chronic Pulmonary Disease Caused by Tsukamurella toyonakaense.

Tomoki Kuge, Kiyoharu Fukushima, Yuki Matsumoto, Haruko Saito, Yuko Abe, Eri Akiba, Kako Haduki, Tadayoshi Nitta, Akira Kawano, Michio Tanaka, Yumi Hattori, Takahiro Kawasaki, Takanori Matsuki, Takayuki Shiroyama, Daisuke Motooka, Kazuyuki Tsujino, Keisuke Miki, Masahide Mori, Seigo Kitada, Shota Nakamura, Tetsuya Iida, Atsushi Kumanogoh, Hiroshi Kida

Emerging infectious diseases　Vol. 28　No. 7　p. 1437-1441　2022/07/01　Research paper (scientific journal)

Firmicutes in Gut Microbiota Correlate with Blood Testosterone Levels in Elderly Men.

Makoto Matsushita, Kazutoshi Fujita, Daisuke Motooka, Koji Hatano, Junya Hata, Mitsuhisa Nishimoto, Eri Banno, Kentaro Takezawa, Shinichiro Fukuhara, Hiroshi Kiuchi, Yue Pan, Toshifumi Takao, Akira Tsujimura, Shinichi Yachida, Shota Nakamura, Wataru Obara, Hirotsugu Uemura, Norio Nonomura

The world journal of men's health　Vol. 40　No. 3　p. 517-525　2022/07/01　Research paper (scientific journal)

Longitudinal alterations of the gut mycobiota and microbiota on COVID-19 severity.

Yuichi Maeda, Daisuke Motooka, Takahiro Kawasaki, Hiroya Oki, Yoshimi Noda, Yuichi Adachi, Takayuki Niitsu, Shota Okamoto, Kentaro Tanaka, Kiyoharu Fukushima, Saori Amiya, Reina Hara, Eri Oguro-Igashira, Takanori Matsuki, Haruhiko Hirata, Yoshito Takeda, Hiroshi Kida, Atsushi Kumanogoh, Shota Nakamura, Kiyoshi Takeda

BMC infectious diseases　Vol. 22　No. 1　p. 572-572　2022/06/24　Research paper (scientific journal)

An engineered ACE2 decoy neutralizes the SARS-CoV-2 Omicron variant and confers protection against infection in vivo.

Nariko Ikemura, Shunta Taminishi, Tohru Inaba, Takao Arimori, Daisuke Motooka, Kazutaka Katoh, Yuhei Kirita, Yusuke Higuchi, Songling Li, Tatsuya Suzuki, Yumi Itoh, Yuki Ozaki, Shota Nakamura, Satoaki Matoba, Daron M Standley, Toru Okamoto, Junichi Takagi, Atsushi Hoshino

Science translational medicine　Vol. 14　No. 650　2022/06/22　Research paper (scientific journal)

次世代シーケンサーMinIONを用いた抗酸菌リアルタイム同定システムの開発

松本 悠希, 福島 清春, 元岡 大祐, 金城 武士, 木田 博, 中村 昇太

結核　Vol. 97　No. 4　p. 118-118　2022/06

Metagenomic identification of pathogenic bacteria for pneumonia from postmortem lung tissue

Hidenori Yoshizawa, Daisuke Motooka, Shota Nakamura, Ken ichi Yoshida

Human Pathology Reports　Vol. 28　2022/06　Research paper (scientific journal)

Bile Collected From the Normal Gallbladder of Patients During Surgery Has Simple Bacterial Flora.

Shin Watanabe, Masaaki Minagawa, Tadashi Shinoda, Daisuke Motooka, Mari Tohya, Teruo Kirikae, Shota Nakamura, Akio Saiura

Cureus　Vol. 14　No. 6　2022/06　Research paper (scientific journal)

Mycobacterium senriense sp. nov., a slowly growing, non-scotochromogenic species, isolated from sputum of an elderly man.

Yuko Abe, Kiyoharu Fukushima, Yuki Matsumoto, Takayuki Niitsu, Hiroshi Nabeshima, Yasuharu Nagahama, Eri Akiba, Kako Haduki, Haruko Saito, Tadayoshi Nitta, Akira Kawano, Michio Tanaka, Takanori Matsuki, Daisuke Motooka, Kazuyuki Tsujino, Keisuke Miki, Shota Nakamura, Tetsuya Iida, Hiroshi Kida

International journal of systematic and evolutionary microbiology　Vol. 72　No. 5　2022/05　Research paper (scientific journal)

リアルタイムコアゲノム解析による非結核性抗酸菌症の迅速・高精度同定法の確立および臨床応用

新津 敬之, 福島 清春, 松本 悠希, 安部 祐子, 新居 卓朗, 木庭 太郎, 松木 隆典, 元岡 大祐, 辻野 和之, 三木 啓資, 中村 昇太, 木田 博

日本呼吸器学会誌　Vol. 11　No. 増刊　p. 312-312　2022/04

Epithelial miR-215 negatively modulates Th17-dominant inflammation by inhibiting CXCL12 production in the small intestine.

Siddhika Pareek, Xenia Sanchenkova, Taiki Sakaguchi, Mari Murakami, Ryu Okumura, Hisako Kayama, Saya Kawauchi, Daisuke Motooka, Shota Nakamura, Daisuke Okuzaki, Tadamitsu Kishimoto, Kiyoshi Takeda

Genes to cells : devoted to molecular & cellular mechanisms　Vol. 27　No. 4　p. 243-253　2022/04/01　Research paper (scientific journal)

Analysis of the complete genome sequences of Clostridium perfringens strains harbouring the binary enterotoxin BEC gene and comparative genomics of pCP13-like family plasmids.

Kengo Ueda, Kazuki Kawahara, Narumi Kimoto, Yusuke Yamaguchi, Kazuhiro Yamada, Hiroya Oki, Takuya Yoshida, Shigeaki Matsuda, Yuki Matsumoto, Daisuke Motooka, Kentaro Kawatsu, Tetsuya Iida, Shota Nakamura, Tadayasu Ohkubo, Shinya Yonogi

BMC genomics　Vol. 23　No. 1　p. 226-226　2022/03/23　Research paper (scientific journal)

Characterization of Salivary Microbiota in Patients with Atherosclerotic Cardiovascular Disease: A Case-Control Study.

Nahoko Kato-Kogoe, Shoichi Sakaguchi, Kuniyasu Kamiya, Michi Omori, Yan-Hong Gu, Yuri Ito, Shota Nakamura, Takashi Nakano, Junko Tamaki, Takaaki Ueno, Masaaki Hoshiga

Journal of atherosclerosis and thrombosis　Vol. 29　No. 3　p. 403-421　2022/03/01　Research paper (scientific journal)

Dysbiosis of Gut Microbiome Is Associated With Rupture of Cerebral Aneurysms.

Shuhei Kawabata, Masatoshi Takagaki, Hajime Nakamura, Hiroya Oki, Daisuke Motooka, Shota Nakamura, Takeo Nishida, Eisaku Terada, Nobuyuki Izutsu, Tomofumi Takenaka, Yuichi Matsui, Shuhei Yamada, Katsunori Asai, Akihiro Tateishi, Toru Umehara, Yoshihiro Yano, Yohei Bamba, Katsumi Matsumoto, Toshihiro Kishikawa, Yukinori Okada, Tetsuya Iida, Haruhiko Kishima

Stroke　Vol. 53　No. 3　p. 895-903　2022/03/01　Research paper (scientific journal)

Whole gut virome analysis of 476 Japanese revealed a link between phage and autoimmune disease.

Yoshihiko Tomofuji, Toshihiro Kishikawa, Yuichi Maeda, Kotaro Ogawa, Takuro Nii, Tatsusada Okuno, Eri Oguro-Igashira, Makoto Kinoshita, Kenichi Yamamoto, Kyuto Sonehara, Mayu Yagita, Akiko Hosokawa, Daisuke Motooka, Yuki Matsumoto, Hidetoshi Matsuoka, Maiko Yoshimura, Shiro Ohshima, Shota Nakamura, Hidenori Inohara, Hideki Mochizuki, Kiyoshi Takeda, Atsushi Kumanogoh, Yukinori Okada

Annals of the rheumatic diseases　Vol. 81　No. 2　p. 278-288　2022/02/01　Research paper (scientific journal)

Characterization of salivary microbiota in elderly patients with type 2 diabetes mellitus: a matched case-control study.

Michi Omori, Nahoko Kato-Kogoe, Shoichi Sakaguchi, Kuniyasu Kamiya, Nozomu Fukui, Yan-Hong Gu, Shota Nakamura, Takashi Nakano, Masaaki Hoshiga, Akihisa Imagawa, Chee Hoe Kit, Junko Tamaki, Takaaki Ueno

Clinical oral investigations　Vol. 26　No. 1　p. 493-504　2022/01　Research paper (scientific journal)

A case of massive refractory diarrhea in a patient with <scp>COVID</scp> ‐19

Kentaro Shimizu, Haruhiko Hirata, Natsuko Tokuhira, Akiko Ueda, Daisuke Motooka, Shota Nakamura, Hiroshi Ogura

Acute Medicine and Surgery　Vol. 9　No. 1　2022/01　Research paper (scientific journal)

Dynamic change of fecal microbiota and metabolomics in a polymicrobial murine sepsis model

Arisa Muratsu, Mitsunori Ikeda, Kentaro Shimizu, Shoichiro Kameoka, Daisuke Motooka, Shota Nakamura, Hisatake Matsumoto, Hiroshi Ogura, Takeshi Shimazu

ACUTE MEDICINE & SURGERY　Vol. 9　No. 1　2022/01　Research paper (scientific journal)

Enterococcus spp. have higher fitness for survival, in a pH-dependent manner, in pancreatic juice among duodenal bacterial flora.

Saki Itoyama, Emika Noda, Shinji Takamatsu, Jumpei Kondo, Rui Kawaguchi, Munefumi Shimosaka, Tomoya Fukuoka, Daisuke Motooka, Shota Nakamura, Masahiro Tanemura, Suguru Mitsufuji, Yoshifumi Iwagami, Hirofumi Akita, Toru Tobe, Yoshihiro Kamada, Hidetoshi Eguchi, Eiji Miyoshi

JGH open : an open access journal of gastroenterology and hepatology　Vol. 6　No. 1　p. 85-90　2022/01/01　Research paper (scientific journal)

Identification of conserved SARS-CoV-2 spike epitopes that expand public cTfh clonotypes in mild COVID-19 patients.

Xiuyuan Lu, Yuki Hosono, Masamichi Nagae, Shigenari Ishizuka, Eri Ishikawa, Daisuke Motooka, Yuki Ozaki, Nicolas Sax, Yuichi Maeda, Yasuhiro Kato, Takayoshi Morita, Ryo Shinnakasu, Takeshi Inoue, Taishi Onodera, Takayuki Matsumura, Masaharu Shinkai, Takashi Sato, Shota Nakamura, Shunsuke Mori, Teru Kanda, Emi E Nakayama, Tatsuo Shioda, Tomohiro Kurosaki, Kiyoshi Takeda, Atsushi Kumanogoh, Hisashi Arase, Hironori Nakagami, Kazuo Yamashita, Yoshimasa Takahashi, Sho Yamasaki

The Journal of experimental medicine　Vol. 218　No. 12　2021/12/06　Research paper (scientific journal)

日本人における高悪性度前立腺癌に特徴的な腸内細菌叢の解析

藤田 和利, 松下 慎, 波多野 浩士, 中村 昇太, 川村 憲彦, 高田 晋吾, 西本 光寿, 坂野 恵里, 南 高文, 野澤 昌弘, 吉村 一宏, 植村 天受, 野々村 祝夫

日本泌尿器科学会総会　Vol. 109回　p. AOP06-09　2021/12

腸内細菌が産生する短鎖脂肪酸はIGF-1シグナル経路を介して前立腺癌の増殖に関与する

松下 慎, 藤田 和利, 加藤 大悟, 波多野 浩士, 河嶋 厚成, 氏家 剛, 植村 元秀, 今村 亮一, 辻川 和丈, 中村 昇太, 竹田 潔, 野々村 祝夫

日本泌尿器科学会総会　Vol. 109回　p. AOP10-02　2021/12

腸内細菌叢のFirmicutes/Bacteroidetes比と前立腺肥大との関連(The Firmicutes/Bacteroidetes ratio of the gut microbiota is associated with prostate enlargement)

竹澤 健太郎, 栗林 宗平, 岡田 紘一, 関井 洋輔, 松下 慎, 福原 慎一郎, 木内 寛, 藤田 和利, 川村 憲彦, 高田 晋吾, 中村 昇太, 小島 祥敬, 野々村 祝夫

日本泌尿器科学会総会　Vol. 109回　p. ISA01-08　2021/12

日本人における高悪性度前立腺癌に特徴的な腸内細菌叢の解析

藤田 和利, 松下 慎, 波多野 浩士, 中村 昇太, 川村 憲彦, 高田 晋吾, 西本 光寿, 坂野 恵里, 南 高文, 野澤 昌弘, 吉村 一宏, 植村 天受, 野々村 祝夫

日本泌尿器科学会総会　Vol. 109回　p. AOP06-09　2021/12

腸内細菌が産生する短鎖脂肪酸はIGF-1シグナル経路を介して前立腺癌の増殖に関与する

松下 慎, 藤田 和利, 加藤 大悟, 波多野 浩士, 河嶋 厚成, 氏家 剛, 植村 元秀, 今村 亮一, 辻川 和丈, 中村 昇太, 竹田 潔, 野々村 祝夫

日本泌尿器科学会総会　Vol. 109回　p. AOP10-02　2021/12

Impact of sleep on the microbiome of oral biofilms.

Maki Sotozono, Nanako Kuriki, Yoko Asahi, Yuichiro Noiri, Mikako Hayashi, Daisuke Motooka, Shota Nakamura, Mikiyo Yamaguchi, Tetsuya Iida, Shigeyuki Ebisu

PloS one　Vol. 16　No. 12　2021/12/01　Research paper (scientific journal)

The Firmicutes/Bacteroidetes ratio of the human gut microbiota is associated with prostate enlargement.

Kentaro Takezawa, Kazutoshi Fujita, Makoto Matsushita, Daisuke Motooka, Koji Hatano, Eri Banno, Nobutaka Shimizu, Tetsuya Takao, Shingo Takada, Koichi Okada, Shinichiro Fukuhara, Hiroshi Kiuchi, Hirotsugu Uemura, Shota Nakamura, Yoshiyuki Kojima, Norio Nonomura

The Prostate　Vol. 81　No. 16　p. 1287-1293　2021/12/01　Research paper (scientific journal)

Metagenome-wide association study revealed disease-specific landscape of the gut microbiome of systemic lupus erythematosus in Japanese.

Yoshihiko Tomofuji, Yuichi Maeda, Eri Oguro-Igashira, Toshihiro Kishikawa, Kenichi Yamamoto, Kyuto Sonehara, Daisuke Motooka, Yuki Matsumoto, Hidetoshi Matsuoka, Maiko Yoshimura, Mayu Yagita, Takuro Nii, Shiro Ohshima, Shota Nakamura, Hidenori Inohara, Kiyoshi Takeda, Atsushi Kumanogoh, Yukinori Okada

Annals of the rheumatic diseases　Vol. 80　No. 12　p. 1575-1583　2021/12/01　Research paper (scientific journal)

Analysis of appendectomy samples identified dysbiosis in acute appendicitis.

Shinya Munakata, Mari Tohya, Hirokazu Matsuzawa, Yuki Tsuchiya, Kota Amemiya, Toshiaki Hagiwara, Daisuke Motooka, Shota Nakamura, Kazuhiro Sakamoto, Shin Watanabe

Bioscience of microbiota, food and health　Vol. 40　No. 2　p. 92-97　2021/12　Research paper (scientific journal)

Chronic pathophysiological changes in the normal brain parenchyma caused by radiotherapy accelerate glioma progression.

Yuichiro Tsuji, Naosuke Nonoguchi, Daisuke Okuzaki, Yusuke Wada, Daisuke Motooka, Yuki Hirota, Taichiro Toho, Nobuhiko Yoshikawa, Motomasa Furuse, Shinji Kawabata, Shin-Ichi Miyatake, Hiroyuki Nakamura, Ryohei Yamamoto, Shota Nakamura, Toshihiko Kuroiwa, Masahiko Wanibuchi

Scientific reports　Vol. 11　No. 1　p. 22110-22110　2021/11/11　Research paper (scientific journal)

High production of egc2-related staphylococcal enterotoxins caused a food poisoning outbreak.

Kaoru Umeda, Hisaya K Ono, Takayuki Wada, Daisuke Motooka, Shota Nakamura, Hiromi Nakamura, Dong-Liang Hu

International journal of food microbiology　Vol. 357　p. 109366-109366　2021/11/02　Research paper (scientific journal)

Vescimonas gen. nov., Vescimonas coprocola sp. nov., Vescimonas fastidiosa sp. nov., Pusillimonas gen. nov. and Pusillimonas faecalis sp. nov. isolated from human faeces.

Maki Kitahara, Yuko Shigeno, Mari Shime, Yuki Matsumoto, Shota Nakamura, Daisuke Motooka, Shota Fukuoka, Hiroyoshi Nishikawa, Yoshimi Benno

International journal of systematic and evolutionary microbiology　Vol. 71　No. 11　2021/11/01　Research paper (scientific journal)

Pleural Effusion Caused by Mycolicibacterium mageritense in an Immunocompetent Host: A Case Report.

Takayuki Niitsu, Tomoki Kuge, Kiyoharu Fukushima, Yuki Matsumoto, Yuko Abe, Masashi Okamoto, Kako Haduki, Haruko Saito, Tadayoshi Nitta, Akira Kawano, Takanori Matsuki, Daisuke Motooka, Kazuyuki Tsujino, Keisuke Miki, Shota Nakamura, Hiroshi Kida, Atsushi Kumanogoh

Frontiers in medicine　Vol. 8　p. 797171-797171　2021/11/01

Comparison of the multigene panel test and OncoScan™ for the determination of HER2 amplification in breast cancer.

Kaori Akazawa, Naofumi Kagara, Yoshiaki Sota, Daisuke Motooka, Shota Nakamura, Tomohiro Miyake, Tomonori Tanei, Yasuto Naoi, Masafumi Shimoda, Seung Jin Kim, Shinzaburo Noguchi, Kenzo Shimazu

Oncology reports　Vol. 46　No. 4　2021/10/01　Research paper (scientific journal)

Serum GPL core antibody levels are associated with disease activity and treatment outcomes in Mycobacterium avium complex lung disease following first line antibiotic treatment.

Kiyoharu Fukushima, Seigo Kitada, Yuki Matsumoto, Sho Komukai, Tomoki Kuge, Takahiro Kawasaki, Takanori Matsuki, Daisuke Motooka, Kazuyuki Tsujino, Mari Miki, Keisuke Miki, Shota Nakamura, Hiroshi Kida

Respiratory medicine　Vol. 187　p. 106585-106585　2021/10/01　Research paper (scientific journal)

The ATP-hydrolyzing ectoenzyme E-NTPD8 attenuates colitis through modulation of P2X4 receptor-dependent metabolism in myeloid cells.

Haruka Tani, Bo Li, Takashi Kusu, Ryu Okumura, Junichi Nishimura, Daisuke Okuzaki, Daisuke Motooka, Shoya Arakawa, Asuka Mori, Terukazu Yoshihara, Takayuki Ogino, Shih-Han Tsai, Yoki Furuta, Masato Muneta, Shota Nakamura, Eiichiro Fukusaki, Kimiko Yamamoto, Hideo Yagita, Hisako Kayama, Kiyoshi Takeda

Proceedings of the National Academy of Sciences of the United States of America　Vol. 118　No. 39　2021/09/28　Research paper (scientific journal)

腸内細菌叢のFirmicutes/Bacteroidetes比は前立腺腫大と関連する

竹澤 健太郎, 栗林 宗平, 岡田 紘一, 関井 洋輔, 松下 慎, 福原 慎一郎, 木内 寛, 藤田 和利, 川村 憲彦, 高田 晋吾, 中村 昇太, 小島 祥敬, 野々村 祝夫

日本排尿機能学会誌　Vol. 32　No. 1　p. 186-186　2021/09

腸内細菌叢とがん 高grade前立腺癌に関与する腸内細菌叢の解析

藤田 和利, 松下 慎, 元岡 大祐, 波多野 浩士, 西本 光寿, 坂野 恵里, 南 高文, 野澤 昌弘, 高尾 徹也, 高田 晋吾, 吉村 一宏, 谷内田 真一, 中村 昇太, 植村 天受, 野々村 祝夫

日本癌学会総会記事　Vol. 80回　p. [S12-6]　2021/09

慢性膵炎を引き起こすEnterococcus faecalisの性状解析

下坂 宗史, 野田 愛美香, 川口 瑠惟, 糸山 幸来, 高松 真二, 元岡 大祐, 中村 昇太, 光藤 傑, 秋田 裕史, 岩上 佳史, 鎌田 佳宏, 江口 英利, 三善 英知

膵臓　Vol. 36　No. 3　p. A330-A330　2021/08

DsRNA sequencing for RNA virus surveillance using human clinical samples

Takuma Izumi, Yuhei Morioka, Syun Ichi Urayama, Daisuke Motooka, Tomokazu Tamura, Takahiro Kawagishi, Yuta Kanai, Takeshi Kobayashi, Chikako Ono, Akinari Morinaga, Takahiro Tomiyama, Norifumi Iseda, Yukiko Kosai, Shoichi Inokuchi, Shota Nakamura, Tomohisa Tanaka, Kohji Moriishi, Hiroaki Kariwa, Tomoharu Yoshizumi, Masaki Mori, Yoshiharu Matsuura, Takasuke Fukuhara

Viruses　Vol. 13　No. 7　2021/07/01　Research paper (scientific journal)

Benchmark of 16S rRNA gene amplicon sequencing using Japanese gut microbiome data from the V1–V2 and V3–V4 primer sets

Shoichiro Kameoka, Daisuke Motooka, Satoshi Watanabe, Ryuichi Kubo, Nicolas Jung, Yuki Midorikawa, Natsuko O. Shinozaki, Yu Sawai, Aya K. Takeda, Shota Nakamura

BMC Genomics　Vol. 22　No. 1　2021/07/01　Research paper (scientific journal)

Low diversity of gut microbiota in the early phase of post-bone marrow transplantation increases the risk of chronic graft-versus-host disease

Tatsuya Konishi, Shinsuke Kusakabe, Akihisa Hino, Kyoko Inamoto, Kota Yoshifuji, Yuko Kiridoshi, Kozue Takeshita, Satoshi Sasajima, Takashi Toya, Aiko Igarashi, Yuho Najima, Takeshi Kobayashi, Noriko Doki, Daisuke Motooka, Shota Nakamura, Masahiro Suyama, Wataru Suda, Atsushi Shiota, Koji Atarashi, Masahira Hattori, Kenya Honda, Takafumi Yokota, Kazuteru Ohashi, Hirohiko Shibayama, Kentaro Fukushima, Kazuhiko Kakihana

Bone Marrow Transplantation　Vol. 56　No. 7　p. 1728-1731　2021/07　Research paper (scientific journal)

Engineered ACE2 receptor therapy overcomes mutational escape of SARS-CoV-2.

Yusuke Higuchi, Tatsuya Suzuki, Takao Arimori, Nariko Ikemura, Emiko Mihara, Yuhei Kirita, Eriko Ohgitani, Osam Mazda, Daisuke Motooka, Shota Nakamura, Yusuke Sakai, Yumi Itoh, Fuminori Sugihara, Yoshiharu Matsuura, Satoaki Matoba, Toru Okamoto, Junichi Takagi, Atsushi Hoshino

Nature communications　Vol. 12　No. 1　p. 3802-3802　2021/06/21　Research paper (scientific journal)

Rapid and simultaneous identification of three mutations by the Novaplex™ SARS-CoV-2 variants I assay kit.

Wakaki Kami, Takeshi Kinjo, Wakako Arakaki, Hiroya Oki, Daisuke Motooka, Shota Nakamura, Jiro Fujita

Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology　Vol. 141　p. 104877-104877　2021/05/29　Research paper (scientific journal)

The gut microbiota associated with high-Gleason prostate cancer.

Makoto Matsushita, Kazutoshi Fujita, Daisuke Motooka, Koji Hatano, Shota Fukae, Norihiko Kawamura, Eisuke Tomiyama, Yujiro Hayashi, Eri Banno, Tetsuya Takao, Shingo Takada, Shinichi Yachida, Hirotsugu Uemura, Shota Nakamura, Norio Nonomura

Cancer science　Vol. 112　No. 8　p. 3125-3135　2021/05/29　Research paper (scientific journal)

Gut microbiota-derived short-chain fatty acids promote prostate cancer growth via IGF-1 signaling.

Makoto Matsushita, Kazutoshi Fujita, Takuji Hayashi, Hisako Kayama, Daisuke Motooka, Hiroaki Hase, Kentaro Jingushi, Gaku Yamamichi, Satoru Yumiba, Eisuke Tomiyama, Yoko Koh, Yujiro Hayashi, Kosuke Nakano, Cong Wang, Yu Ishizuya, Taigo Kato, Koji Hatano, Atsunari Kawashima, Takeshi Ujike, Motohide Uemura, Ryoichi Imamura, Maria D C Rodriguez Pena, Jennifer B Gordetsky, George J Netto, Kazutake Tsujikawa, Shota Nakamura, Kiyoshi Takeda, Norio Nonomura

Cancer research　Vol. 81　No. 15　p. 4014-4026　2021/05/26　Research paper (scientific journal)

Importance of lymph node immune responses in MSI-H/dMMR colorectal cancer.

Koji Inamori, Yosuke Togashi, Shota Fukuoka, Kiwamu Akagi, Kouetsu Ogasawara, Takuma Irie, Daisuke Motooka, Yoichi Kobayashi, Daisuke Sugiyama, Motohiro Kojima, Norihiko Shiiya, Shota Nakamura, Shoichi Maruyama, Yutaka Suzuki, Masaaki Ito, Hiroyoshi Nishikawa

JCI insight　Vol. 6　No. 9　2021/05/10　Research paper (scientific journal)

Gut Dysbiosis Associated with Antibiotics and Disease Severity and Its Relation to Mortality in Critically Ill Patients.

Masahiro Ojima, Kentaro Shimizu, Daisuke Motooka, Takuma Ishihara, Shota Nakamura, Ayumi Shintani, Hiroshi Ogura, Tetsuya Iida, Kazuhisa Yoshiya, Takeshi Shimazu

Digestive diseases and sciences　Vol. 67　No. 6　p. 2420-2432　2021/05/03　Research paper (scientific journal)

Alleviation of colonic inflammation by Lypd8 in a mouse model of inflammatory bowel diseases (IBD).

Chiao-Ching Hsu, Ryu Okumura, Daisuke Motooka, Reo Sasaki, Shota Nakamura, Tetsuya Iida, Kiyoshi Takeda

International immunology　2021/04/05　Research paper (scientific journal)

次世代シーケンサーを用いた病原性非結核性抗酸菌の多様性の解明

福島 清春, 松本 悠希, 久下 朋輝, 松木 隆典, 香川 浩之, 元岡 大祐, 辻野 和之, 三木 真理, 三木 啓資, 中村 昇太, 北田 清悟, 木田 博

日本呼吸器学会誌　Vol. 10　No. 増刊　p. 219-219　2021/04

次世代シーケンサーを用いた病原性非結核性抗酸菌の多様性の解明

福島 清春, 松本 悠希, 久下 朋輝, 松木 隆典, 香川 浩之, 元岡 大祐, 辻野 和之, 三木 真理, 三木 啓資, 中村 昇太, 北田 清悟, 木田 博

日本呼吸器学会誌　Vol. 10　No. 増刊　p. 219-219　2021/04

Low diversity of gut microbiota in the early phase of post-bone marrow transplantation increases the risk of chronic graft-versus-host disease.

Tatsuya Konishi, Shinsuke Kusakabe, Akihisa Hino, Kyoko Inamoto, Kota Yoshifuji, Yuko Kiridoshi, Kozue Takeshita, Satoshi Sasajima, Takashi Toya, Aiko Igarashi, Yuho Najima, Takeshi Kobayashi, Noriko Doki, Daisuke Motooka, Shota Nakamura, Masahiro Suyama, Wataru Suda, Atsushi Shiota, Koji Atarashi, Masahira Hattori, Kenya Honda, Takafumi Yokota, Kazuteru Ohashi, Hirohiko Shibayama, Kentaro Fukushima, Kazuhiko Kakihana

Bone marrow transplantation　Vol. 56　No. 7　p. 1728-1731　2021/03/08　Research paper (scientific journal)

Genomic characterization of clinical Enterobacter roggenkampii co-harbouring bla<inf>IMP-1</inf>- and bla<inf>GES-5</inf>-encoding IncP6 and mcr-9-encoding IncHI2 plasmids isolated in Japan

Kaoru Umeda, Hiromi Nakamura, Akira Fukuda, Yuki Matsumoto, Daisuke Motooka, Shota Nakamura, Yoshinori Yasui, Hideki Yoshida, Ryuji Kawahara

Journal of Global Antimicrobial Resistance　Vol. 24　p. 220-227　2021/03/01　Research paper (scientific journal)

Whole-genome analyses of extended-spectrum or AmpC β-lactamase-producing Escherichia coli isolates from companion dogs in Japan

Mayo Yasugi, Shingo Hatoya, Daisuke Motooka, Yuki Matsumoto, Shunsuke Shimamura, Hiroyuki Tani, Masaru Furuya, Keiichiro Mie, Masami Miyake, Shota Nakamura, Terumasa Shimada

PLoS ONE　Vol. 16　No. 2-Feb　2021/02/01　Research paper (scientific journal)

Oral intake of silica nanoparticles exacerbates intestinal inflammation

Takao Ogawa, Ryu Okumura, Kazuya Nagano, Tomomi Minemura, Masahiro Izumi, Daisuke Motooka, Shota Nakamura, Tetsuya Iida, Yuichi Maeda, Atsushi Kumanogoh, Yasuo Tsutsumi, Kiyoshi Takeda

Biochemical and Biophysical Research Communications　Vol. 534　p. 540-546　2021/01/01　Research paper (scientific journal)

Impacts of sleep on the characteristics of dental biofilm

Maki Sotozono, Nanako Kuriki, Yoko Asahi, Yuichiro Noiri, Mikako Hayashi, Daisuke Motooka, Shota Nakamura, Hiroyuki Machi, Tetsuya Iida, Shigeyuki Ebisu

Scientific Reports　Vol. 11　No. 1　2021/01/01　Research paper (scientific journal)

A Metagenome-Wide Association Study of Gut Microbiome in Patients With Multiple Sclerosis Revealed Novel Disease Pathology

Toshihiro Kishikawa, Kotaro Ogawa, Daisuke Motooka, Akiko Hosokawa, Makoto Kinoshita, Ken Suzuki, Kenichi Yamamoto, Tatsuo Masuda, Yuki Matsumoto, Takuro Nii, Yuichi Maeda, Shota Nakamura, Hidenori Inohara, Hideki Mochizuki, Tatsusada Okuno, Yukinori Okada

Frontiers in Cellular and Infection Microbiology　Vol. 10　2020/12/11　Research paper (scientific journal)

Pulmonary disease caused by a newly identified mycobacterium: Mycolicibacterium toneyamachuris: a case report

Tomoki Kuge, Kiyoharu Fukushima, Yuki Matsumoto, Yuko Abe, Eri Akiba, Kako Haduki, Haruko Saito, Tadayoshi Nitta, Akira Kawano, Takahiro Kawasaki, Takanori Matsuki, Hiroyuki Kagawa, Daisuke Motooka, Kazuyuki Tsujino, Mari Miki, Keisuke Miki, Seigo Kitada, Shota Nakamura, Tetsuya Iida, Hiroshi Kida

BMC Infectious Diseases　Vol. 20　No. 1　2020/12/01　Research paper (scientific journal)

Detection of Genetic Elements Carrying vanA in Vancomycin-Resistant Enterococcus saigonensis VE80^TIsolated from Retail Chicken Meat

Tetsuya Harada, Daisuke Motooka, Shota Nakamura, Yoshimasa Yamamoto, Takahiro Yamaguchi, Ryuji Kawahara, Kentaro Kawatsu

Foodborne Pathogens and Disease　Vol. 17　No. 12　p. 772-774　2020/12/01　Research paper (scientific journal)

Novel human reovirus isolated from children and its long-term circulation with reassortments

Seiji P. Yamamoto, Daisuke Motooka, Kazutaka Egawa, Atsushi Kaida, Yuki Hirai, Hideyuki Kubo, Kazushi Motomura, Shota Nakamura, Nobuhiro Iritani

Scientific Reports　Vol. 10　No. 1　2020/12/01　Research paper (scientific journal)

Fecal Gram staining of phagocytosed bacteria to differentiate methicillin-resistant Staphylococcus aureus: A case report

Kentaro Shimizu, Ayumi Takahashi, Daisuke Motooka, Shota Nakamura, Kazunori Tomono, Hiroshi Ogura, Takeshi Shimazu

Journal of Infection and Chemotherapy　Vol. 26　No. 10　p. 1078-1081　2020/10　Research paper (scientific journal)

High affinity modified ACE2 receptors prevent SARS-CoV-2 infection

Yusuke Higuchi, Tatsuya Suzuki, Takao Arimori, Nariko Ikemura, Yuhei Kirita, Eriko Ohgitani, Osam Mazda, Daisuke Motooka, Shota Nakamura, Yoshiharu Matsuura, Satoaki Matoba, Toru Okamoto, Junichi Takagi, Atsushi Hoshino

2020/09/16

Detection of ctDNA with Personalized Molecular Barcode NGS and Its Clinical Significance in Patients with Early Breast Cancer

Tetsuhiro Yoshinami, Naofumi Kagara, Daisuke Motooka, Shota Nakamura, Tomohiro Miyake, Tomonori Tanei, Yasuto Naoi, Masafumi Shimoda, Kenzo Shimazu, Seung Jin Kim, Shinzaburo Noguchi

Translational Oncology　Vol. 13　No. 8　p. 100787-100787　2020/08　Research paper (scientific journal)

Possible biological processes controlled by the circatidal clock in the mangrove cricket inferred from transcriptome analysis

Hiroki Takekata, Shin Ichiro Tachibana, Daisuke Motooka, Shota Nakamura, Shin G. Goto

Biological Rhythm Research　Vol. 53　No. 6　p. 908-920　2020/07/30　Research paper (scientific journal)

High-Performance Virus Detection System by using Deep Learning

Ying Feng Hsu, Makiko Ito, Takumi Maruyama, Morito Matsuoka, Nicolas Jung, Yuki Matsumoto, Daisuke Motooka, Shota Nakamura

2020 IEEE Congress on Evolutionary Computation, CEC 2020 - Conference Proceedings　2020/07/01　Research paper (international conference proceedings)

Emergence and diversification of a host-parasite RNA ecosystem through Darwinian evolution

Taro Furubayashi, Kensuke Ueda, Yohsuke Bansho, Daisuke Motooka, Shota Nakamura, Ryo Mizuuchi, Norikazu Ichihashi

eLife　Vol. 9　p. 1-15　2020/07　Research paper (scientific journal)

UNAGI: an automated pipeline for nanopore full-length cDNA sequencing uncovers novel transcripts and isoforms in yeast

Mohamad Al kadi, Nicolas Jung, Shingo Ito, Shoichiro Kameoka, Takashi Hishida, Daisuke Motooka, Shota Nakamura, Tetsuya Iida, Daisuke Okuzaki

Functional and Integrative Genomics　Vol. 20　No. 4　p. 523-536　2020/07/01　Research paper (scientific journal)

Regulatory T Cell-Specific Epigenomic Region Variants Are a Key Determinant of Susceptibility to Common Autoimmune Diseases

Naganari Ohkura, Yoshiaki Yasumizu, Yohko Kitagawa, Atsushi Tanaka, Yamami Nakamura, Daisuke Motooka, Shota Nakamura, Yukinori Okada, Shimon Sakaguchi

Immunity　Vol. 52　No. 6　p. 1119-1132.e4　2020/06/16　Research paper (scientific journal)

The impact of adjuvant surgical treatment of nontuberculous mycobacterial pulmonary disease on prognosis and outcome

Kiyoharu Fukushima, Kiyoharu Fukushima, Mari Miki, Yuki Matsumoto, Emi Uda, Yuji Yamamoto, Yuya Kogita, Yuko Kagawa, Takanori Matsuki, Hiroyuki Kagawa, Yohei Oshitani, Daisuke Motooka, Kazuyuki Tsujino, Kenji Yoshimura, Keisuke Miki, Akio Hayashi, Shota Nakamura, Seigo Kitada, Yukiyasu Takeuchi, Hiroshi Kida

Respiratory Research　Vol. 21　No. 1　p. 153-153　2020/06/16　Research paper (scientific journal)

Host immune response and novel diagnostic approach to NTM infections

Yuko Abe, Kiyoharu Fukushima, Yuki Hosono, Yuki Matsumoto, Daisuke Motooka, Naoko Ose, Shota Nakamura, Seigo Kitada, Hiroshi Kida, Atsushi Kumanogoh

International Journal of Molecular Sciences　Vol. 21　No. 12　p. 1-15　2020/06/02

Whole-genome sequencing and comparative analysis of the genomes of Bacteroides thetaiotaomicron and Escherichia coli isolated from a healthy resident in Vietnam

Mashkoor Mohsin, Kaori Tanaka, Ryuji Kawahara, Shinji Kondo, Hideki Noguchi, Daisuke Motooka, Shota Nakamura, Diep Thi Khong, Thang Nam Nguyen, Trong Nang Hoang, Yoshimasa Yamamoto

Journal of Global Antimicrobial Resistance　Vol. 21　p. 65-67　2020/06

Expression of small RNAs of Bordetella pertussis colonizing murine tracheas

Yukihiro Hiramatsu, Koichiro Suzuki, Daisuke Motooka, Shota Nakamura, Yasuhiko Horiguchi

Microbiology and Immunology　Vol. 64　No. 6　p. 469-475　2020/06/01　Research paper (scientific journal)

Comparative evaluation of microbial profiles of oral samples obtained at different collection time points and using different methods

Michi Omori, Nahoko Kato-Kogoe, Shoichi Sakaguchi, Nozomu Fukui, Kayoko Yamamoto, Yoichiro Nakajima, Kazuya Inoue, Hiroyuki Nakano, Daisuke Motooka, Takashi Nakano, Shota Nakamura, Takaaki Ueno

Clinical Oral Investigations　Vol. 25　No. 5　p. 2779-2789　2020/05/01　Research paper (scientific journal)

Enterococcus: A Predictor of Ravaged Microbiota and Poor Prognosis after Allogeneic Hematopoietic Stem Cell Transplantation

Shinsuke Kusakabe, Kentaro Fukushima, Takafumi Yokota, Akihisa Hino, Jiro Fujita, Daisuke Motooka, Shota Nakamura, Hirohiko Shibayama, Yuzuru Kanakura

Biology of Blood and Marrow Transplantation　Vol. 26　No. 5　p. 1028-1033　2020/05　Research paper (scientific journal)

Dysregulated Expression of the Nuclear Exosome Targeting Complex Component Rbm7 in Nonhematopoietic Cells Licenses the Development of Fibrosis

Kiyoharu Fukushima, Takashi Satoh, Fuminori Sugihara, Yuki Sato, Toru Okamoto, Yuichi Mitsui, Sachiyo Yoshio, Songling Li, Satoshi Nojima, Daisuke Motooka, Shota Nakamura, Hiroshi Kida, Daron M. Standley, Eiichi Morii, Tatsuya Kanto, Motoko Yanagita, Yoshiharu Matsuura, Takashi Nagasawa, Atsushi Kumanogoh, Shizuo Akira

Immunity　Vol. 52　No. 3　p. 542-556.e13　2020/03/17　Research paper (scientific journal)

Metagenomic profiling of potential pathogens isolated from blood samples and tracheal aspirates of critically ill children with persistent fever unresponsive to broad-spectrum antibiotics

Warunee Punpanich Vandepitte, Rungrat Sukharom, Nuanjun Wichukchinda, Kunihiro Kaihatsu, Daisuke Motooka, Shota Nakamura

Southeast Asian Journal of Tropical Medicine and Public Health　Vol. 51　No. 2　p. 236-250　2020/03/01　Research paper (scientific journal)

Molecular Barcode Sequencing of the Whole Ligand Binding Domain of the ESR1 Gene in Cell-Free DNA from Patients with Metastatic Breast Cancer

Nanae Masunaga, Naofumi Kagara, Daisuke Motooka, Shota Nakamura, Tomohiro Miyake, Tomonori Tanei, Yasuto Naoi, Masafumi Shimoda, Kenzo Shimazu, Seung Jin Kim, Shinzaburo Noguchi

Translational Oncology　Vol. 13　No. 3　p. 100735-100735　2020/03　Research paper (scientific journal)

High prevalence of colistin-resistant escherichia coli with chromosomally carried mcr-1 in healthy residents in Vietnam

Takahiro Yamaguchi, Ryuji Kawahara, Kouta Hamamoto, Itaru Hirai, Diep Thi Khong, Thang Nam Nguyen, Hoa Thi Tran, Daisuke Motooka, Shota Nakamura, Yoshimasa Yamamoto

mSphere　Vol. 5　No. 2　2020/03/01　Research paper (scientific journal)

Bordetella dermonecrotic toxin is a neurotropic virulence factor that uses Ca<inf>v</inf>3.1 as the cell surface receptor

Shihono Teruya, Yukihiro Hiramatsu, Keiji Nakamura, Aya Fukui-Miyazaki, Kentaro Tsukamoto, Noriko Shinoda, Daisuke Motooka, Shota Nakamura, Keisuke Ishigaki, Naoaki Shinzawa, Takashi Nishida, Fuminori Sugihara, Yusuke Maeda, Yasuhiko Horiguchi

mBio　Vol. 11　No. 2　p. e03146-19　2020/03　Research paper (scientific journal)

The autophagy-related protein GABARAP is induced during overwintering in the bean bug (Hemiptera: Alydidae)

Shin Ichiro Tachibana, Shinji Matsuzaki, Masako Tanaka, Masayuki Shiota, Daisuke Motooka, Shota Nakamura, Shin G. Goto

Journal of Economic Entomology　Vol. 113　No. 1　p. 427-434　2020/02/08　Research paper (scientific journal)

Phosphorothioation of foreign DNA influences the transformation efficiency in Clostridium perfringens NCTC8239

Mayo Yasugi, Daisuke Motooka, Shota Nakamura, Masami Miyake

Anaerobe　Vol. 61　2020/02　Research paper (scientific journal)

Pre- and post-serial metagenomic analysis of gut microbiota as a prognostic factor in patients undergoing haematopoietic stem cell transplantation

Shinsuke Kusakabe, Kentaro Fukushima, Tetsuo Maeda, Daisuke Motooka, Shota Nakamura, Jiro Fujita, Takafumi Yokota, Hirohiko Shibayama, Kenji Oritani, Yuzuru Kanakura

British Journal of Haematology　Vol. 188　No. 3　p. 438-449　2020/02/01　Research paper (scientific journal)

Metagenome-wide association study of gut microbiome revealed novel aetiology of rheumatoid arthritis in the Japanese population.

Toshihiro Kishikawa, Yuichi Maeda, Takuro Nii, Daisuke Motooka, Yuki Matsumoto, Masato Matsushita, Hidetoshi Matsuoka, Maiko Yoshimura, Shoji Kawada, Satoru Teshigawara, Eri Oguro, Yasutaka Okita, Keisuke Kawamoto, Shinji Higa, Toru Hirano, Masashi Narazaki, Atsushi Ogata, Yukihiko Saeki, Shota Nakamura, Hidenori Inohara, Atsushi Kumanogoh, Kiyoshi Takeda, Yukinori Okada

Annals of the rheumatic diseases　Vol. 79　No. 1　p. 103-111　2020/01　Research paper (scientific journal)

Molecular characterization of bla<inf>KHM-1</inf> encoding plasmid in an Enterobacter hormaechei subsp. Hoffmannii isolate from blood culture

Kaoru Umeda, Hiromi Nakamura, Akira Fukuda, Takahiro Yamaguchi, Yuki Matsumoto, Daisuke Motooka, Shota Nakamura, Ryuji Kawahara

PLoS ONE　Vol. 15　No. 1　2020/01　Research paper (scientific journal)

Conjunctival dysbiosis in mucosa-associated lymphoid tissue lymphoma

Kazunobu Asao, Noriyasu Hashida, Satoru Ando, Daisuke Motooka, Hiroyuki Kurakami, Shota Nakamura, Daisuke Yamashita, Kazuichi Maruyama, Satoshi Kawasaki, Tomomi Yamada, Tetsuya Iida, Kohji Nishida

Scientific Reports　Vol. 9　No. 1　p. 8424-8424　2019/12/01　Research paper (scientific journal)

Comparison of Japanese and Indian intestinal microbiota shows diet-dependent interaction between bacteria and fungi

Siddhika Pareek, Takashi Kurakawa, Bhabatosh Das, Daisuke Motooka, Shuuichi Nakaya, Temsunaro Rongsen-Chandola, Nidhi Goyal, Hisako Kayama, Dylan Dodd, Ryu Okumura, Yuichi Maeda, Kosuke Fujimoto, Takuro Nii, Takao Ogawa, Tetsuya Iida, Nita Bhandari, Toshiyuki Kida, Shota Nakamura, G. Balakrish Nair, Kiyoshi Takeda

npj Biofilms and Microbiomes　Vol. 5　No. 1　2019/12/01　Research paper (scientific journal)

Specific increase of Fusobacterium in the faecal microbiota of neonatal calves infected with Cryptosporidium parvum

Madoka Ichikawa-Seki, Daisuke Motooka, Aiko Kinami, Fumi Murakoshi, Yoko Takahashi, Junya Aita, Kei Hayashi, Atsushi Tashibu, Shota Nakamura, Tetsuya Iida, Toshihiro Horii, Yoshifumi Nishikawa

Scientific Reports　Vol. 9　No. 1　2019/12/01　Research paper (scientific journal)

Characterization of human pegivirus infection in liver transplantation recipients

Takuma Izumi, Kazuhito Sakata, Daisuke Okuzaki, Shoichi Inokuchi, Tomokazu Tamura, Daisuke Motooka, Shota Nakamura, Chikako Ono, Masahiro Shimokawa, Yoshiharu Matsuura, Masaki Mori, Takasuke Fukuhara, Tomoharu Yoshizumi

Journal of Medical Virology　Vol. 91　No. 12　p. 2093-2100　2019/12/01　Research paper (scientific journal)

Urinary tract infection due to anaerobic bacteria in a two-month-old infant

Chiaki Tao, Noriko Kinoshita, Kensuke Shoji, Daisuke Motooka, Shota Nakamura, Rumiko Eura, Katsuhiko Ueoka, Mitsuru Kubota, Akira Ishiguro, Isao Miyairi

Journal of Infection and Chemotherapy　Vol. 25　No. 5　p. 368-370　2019/05　Research paper (scientific journal)

Allergic conversion of protective mucosal immunity against nasal bacteria in patients with chronic rhinosinusitis with nasal polyposis

Kazuya Takeda, Shuhei Sakakibara, Kazuo Yamashita, Daisuke Motooka, Shota Nakamura, Marwa Ali El Hussien, Jun Katayama, Yohei Maeda, Masanobu Nakata, Shigeyuki Hamada, Daron M. Standley, Masaki Hayama, Takashi Shikina, Hidenori Inohara, Hitoshi Kikutani

Journal of Allergy and Clinical Immunology　Vol. 143　No. 3　p. 1163-1175.e15　2019/03　Research paper (scientific journal)

BATF2 prevents T-cell-mediated intestinal inflammation through regulation of the IL-23/IL-17 pathway

Hisako Kayama, Haruka Tani, Shoko Kitada, Anunya Opasawatchai, Ryu Okumura, Daisuke Motooka, Shota Nakamura, Kiyoshi Takeda

International Immunology　Vol. 31　No. 6　p. 371-383　2019/02/19　Research paper (scientific journal)

Characterization of Vibrio cholerae isolates from two distinct Kenyan cholera outbreaks in 2007 and 2009

S. P. Awasthi, S. M. Saidi, N. Chowdhury, M. Asakura, P. H. Hoang, A. Hinenoya, D. Motooka, S. Nakamura, Y. Iijima, S. Yamasaki

2019/02　Research paper (international conference proceedings)

Coexistence Of plasmid-mediated mcr-1 And bla<inf>NDM-4</inf> genes in a Klebsiella pneumoniae clinical strain in Vietnam

Lien Le, Linh Khanh Tran, Tam Duong Le-Ha, Bich Phuong Tran, Hong Ngoc Le-Vo, Yen Nhi Nguyen, Hanh Lan Nguyen, Khanh Quynh Hoang-Ngoc, Yuki Matsumoto, Daisuke Motooka, Shota Nakamura, James W. Jones, Tetsuya Iida, Van Cao

Infection and Drug Resistance　Vol. 12　p. 3703-3707　2019　Research paper (scientific journal)

Complex class 1 integron in a clinical Escherichia coli strain from Vietnam carrying both mcr-1 and bla<inf>NDM-1</inf>

Hong Ngoc Le-Vo, Phuong Thi Bich Tran, Lien Le, Yuki Matsumoto, Daisuke Motooka, Shota Nakamura, James W. Jones, Tetsuya Iida, Van Cao

Frontiers in Microbiology　Vol. 10　No. OCT　2019　Research paper (scientific journal)

Diffusely adherent Escherichia coli strains isolated from healthy carriers suppress cytokine secretions of epithelial cells stimulated by inflammatory substances

Yoshihiko Tanimoto, Sayaka Tamai, Takehiro Matsuzaki, Narumi Takeuchi, Takumi Noju, Saki Yanagida, Eriko Kage-Nakadai, Yoshihiro Yamaguchi, Toshio Kodama, Shota Nakamura, Daisuke Motooka, Tetsuya Iida, Yoshikazu Nishikawaa

Infection and Immunity　Vol. 87　No. 1　2019/01/01　Research paper (scientific journal)

Comprehensive subspecies identification of 175 nontuberculous mycobacteria species based on 7547 genomic profiles

Yuki Matsumoto, Takeshi Kinjo, Daisuke Motooka, Daijiro Nabeya, Nicolas Jung, Kohei Uechi, Toshihiro Horii, Tetsuya Iida, Jiro Fujita, Shota Nakamura

Emerging Microbes and Infections　Vol. 8　No. 1　p. 1043-1053　2019/01/01　Research paper (scientific journal)

Characterization of a carbapenem- and colistin-resistant Enterobacter cloacae carrying Tn6901 in bla<inf>NDM-1</inf> genomic context

Tam Duong Le-Ha, Lien Le, Hong Ngoc Le-Vo, Mizue Anda, Daisuke Motooka, Shota Nakamura, Linh Khanh Tran, Phuong Thi Bich Tran, Tetsuya Iida, Van Cao

Infection and Drug Resistance　Vol. 12　p. 733-739　2019　Research paper (scientific journal)

A high-performance sequence analysis engine for shotgun metagenomics through GPU acceleration

Ying Feng Hsu, Morito Matsuoka, Nicolas Jung, Yuki Matsumoto, Daisuke Motooka, Shota Nakamura

Proceedings - 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering, BIBE 2018　p. 54-60　2018/12/06　Research paper (international conference proceedings)

Streptococcus tigurinusによる重症軟部組織感染症の1例

吉澤 秀憲, 片田 竜一, 元岡 大祐, 松本 悠希, 中村 昇太, 松本 博志

日本法医学雑誌　Vol. 72　No. 2　p. 311-311　2018/12

Identification of a Golgi GPI-N-acetylgalactosamine transferase with tandem transmembrane regions in the catalytic domain

Tetsuya Hirata, Sushil K. Mishra, Shota Nakamura, Kazunobu Saito, Daisuke Motooka, Yoko Takada, Noriyuki Kanzawa, Yoshiko Murakami, Yusuke Maeda, Morihisa Fujita, Yoshiki Yamaguchi, Taroh Kinoshita

Nature Communications　Vol. 9　No. 1　p. 405-405　2018/12/01　Research paper (scientific journal)

A Novel Unifrac-Based Analytical Method for Determining Sequential Changes in Gut Microbiota after Hematopoietic Stem Cell Transplantation

Kusakabe Shinsuke, Fukushima Kentaro, Maeda Tetsuo, Yokota Takafumi, Nakai Ritsuko, Hino Akihisa, Nagate Yasuhiro, Fujita Jiro, Daisuke Motooka, Nakamura Shota, Shibayama Hirohiko, Kanakura Yuzuru

The American Society of Hematology 60th Annual Meeting　Vol. 132　2018/11

Regnase-1 contro ls colon epithelial regeneration via regulation of mTOR and purine metabolism

Yasuharu Nagahama, Mayuko Shimoda, Guoliang Mao, Shailendra Kumar Singh, Yuuki Kozakai, Xin Sun, Daisuke Motooka, Shota Nakamura, Hiroki Tanaka, Takashi Satoh, Kazuhiko Maeda, Shizuo Akira

Proceedings of the National Academy of Sciences of the United States of America　Vol. 115　No. 43　p. 11036-11041　2018/10/23　Research paper (scientific journal)

High salt intake increases plasma trimethylamine N-oxide (TMAO) concentration and produces gut dysbiosis in rats

Klaudia Bielinska, Marek Radkowski, Marta Grochowska, Karol Perlejewski, Tomasz Huc, Kinga Jaworska, Daisuke Motooka, Shota Nakamura, Marcin Ufnal

Nutrition　Vol. 54　p. 33-39　2018/10　Research paper (scientific journal)

WU polyomavirus detected in children with severe respiratory failure

Kazuhiro Uda, Chitose Koyama-Wakai, Kensuke Shoji, Noriyasu Iwase, Daisuke Motooka, Shota Nakamura, Isao Miyairi

Journal of Clinical Virology　Vol. 107　p. 25-28　2018/10　Research paper (scientific journal)

造血幹細胞移植後腸内細菌叢のUniFrac解析をもとにした検討(UniFrac analysis of gut microbiota following hematopoietic stem cell transplantation)

草壁 信輔, 前田 哲生, 中井 りつこ, 日野 彬央, 長手 泰宏, 福島 健太郎, 藤田 二郎, 元岡 大佑, 中村 昇太, 柴山 浩彦, 織谷 健司, 金倉 譲

臨床血液　Vol. 59　No. 9　p. 1811-1811　2018/09

Heme ameliorates dextran sodium sulfate-induced colitis through providing intestinal macrophages with noninflammatory profiles

Hisako Kayama, Masako Kohyama, Daisuke Okuzaki, Daisuke Motooka, Soumik Barman, Ryu Okumura, Masato Muneta, Katsuaki Hoshino, Izumi Sasaki, Wataru Ise, Hiroshi Matsuno, Junichi Nishimura, Tomohiro Kurosaki, Shota Nakamura, Hisashi Arase, Tsuneyasu Kaisho, Kiyoshi Takeda

Proceedings of the National Academy of Sciences of the United States of America　Vol. 115　No. 33　p. 8418-8423　2018/08/14　Research paper (scientific journal)

Interplay of a secreted protein with type IVb pilus for efficient enterotoxigenic Escherichia coli colonization

Hiroya Oki, Kazuki Kawahara, Takahiro Maruno, Tomoya Imai, Yuki Muroga, Shunsuke Fukakusa, Takaki Iwashita, Yuji Kobayashi, Shigeaki Matsuda, Toshio Kodama, Tetsuya Iida, Takuya Yoshida, Tadayasu Ohkubo, Shota Nakamura

Proceedings of the National Academy of Sciences of the United States of America　Vol. 115　No. 28　p. 7422-7427　2018/07/10　Research paper (scientific journal)

The presence of colistin resistance gene mcr-1 and -3 in ESBL producing Escherichia coli isolated from food in Ho Chi Minh City, Vietnam

Takahiro Yamaguchi, Ryuji Kawahara, Kazuo Harada, Shihono Teruya, Tatsuya Nakayama, Daisuke Motooka, Shota Nakamura, Phuc Do Nguyen, Yuko Kumeda, Chinh Van Dang, Kazumasa Hirata, Yoshimasa Yamamoto

FEMS Microbiology Letters　Vol. 365　No. 11　2018/06/01　Research paper (scientific journal)

Interplay of a secreted protein with type IVb pilus for efficient enterotoxigenic Escherichia coli colonization

Hiroya Oki, Kazuki Kawahara, Takahiro Maruno, Tomoya Imai, Yuki Muroga, Shunsuke Fukakusa, Takaki Iwashita, Yuji Kobayashi, Shigeaki Matsuda, Toshio Kodama, Tetsuya Iida, Takuya Yoshida, Tadayasu Ohkubo, Shota Nakamura

Proc. Natl. Acad. Sci. USA.　2018/06　Research paper (scientific journal)

A case of severe soft tissue infection due to Streptococcus tigurinus diagnosed by necropsy in which genomic analysis was useful for clarifying its pathogenicity

Hidenori Yoshizawa, Daisuke Motooka, Yuki Matsumoto, Ryuichi Katada, Shota Nakamura, Eiichi Morii, Tetsuya Iida, Hiroshi Matsumoto

Pathology International　Vol. 68　No. 5　p. 301-306　2018/05　Research paper (scientific journal)

Molecular characterization of imp-1-producing enterobacter cloacae complex isolates in Tokyo

Kotaro Aoki, Sohei Harada, Koji Yahara, Yoshikazu Ishii, Daisuke Motooka, Shota Nakamura, Yukihiro Akeda, Tetsuya Iida, Kazunori Tomono, Satoshi Iwata, Kyoji Moriya, Kazuhiro Tateda

Antimicrobial Agents and Chemotherapy　Vol. 62　No. 3　2018/03/01　Research paper (scientific journal)

Molecular characterization of imp-1-producing enterobacter cloacae complex isolates in Tokyo

Kotaro Aoki, Sohei Harada, Koji Yahara, Yoshikazu Ishii, Daisuke Motooka, Shota Nakamura, Yukihiro Akeda, Tetsuya Iida, Kazunori Tomono, Satoshi Iwata, Kyoji Moriya, Kazuhiro Tateda

Antimicrobial Agents and Chemotherapy　Vol. 62　No. 3　2018/03　Research paper (scientific journal)

N-Glycan-dependent protein folding and endoplasmic reticulum retention regulate GPI-anchor processing.

Yi-Shi Liu, Xin-Yu Guo, Tetsuya Hirata, Yao Rong, Daisuke Motooka, Toshihiko Kitajima, Yoshiko Murakami, Xiao-Dong Gao, Shota Nakamura, Taroh Kinoshita, Morihisa Fujita

The Journal of cell biology　Vol. 217　No. 2　p. 585-599　2018/02/05　Research paper (scientific journal)

N-Glycan-dependent protein folding and endoplasmic reticulum retention regulate GPI-anchor processing

Yi Shi Liu, Xin Yu Guo, Tetsuya Hirata, Yao Rong, Daisuke Motooka, Toshihiko Kitajima, Yoshiko Murakami, Xiao Dong Gao, Shota Nakamura, Taroh Kinoshita, Morihisa Fujita

Journal of Cell Biology　Vol. 217　No. 2　p. 585-599　2018/02/01　Research paper (scientific journal)

Non-ischemic heart failure with reduced ejection fraction is associated with altered intestinal microbiota

Themistoklis Katsimichas, Tomohito Ohtani, Daisuke Motooka, Yasumasa Tsukamoto, Hidetaka Kioka, Kei Nakamoto, Shozo Konishi, Misato Chimura, Kaoruko Sengoku, Hiroshi Miyawaki, Taiki Sakaguchi, Ryu Okumura, Konstantinos Theofilis, Tetsuya Iida, Kiyoshi Takeda, Shota Nakamura, Yasushi Sakata

Circulation Journal　Vol. 82　No. 6　p. 1640-1650　2018　Research paper (scientific journal)

Plasmid dynamics in Vibrio parahaemolyticus strains related to shrimp Acute Hepatopancreatic Necrosis Syndrome (AHPNS) (vol 51, pg 211, 2017)

Chonchanok Theethakaew, Shota Nakamura, Daisuke Motooka, Shigeaki Matsuda, Toshio Kodama, Kaknokrat Chonsin, Orasa Suthienkul, Tetsuya Iida

INFECTION GENETICS AND EVOLUTION　Vol. 57　p. 185-185　2018/01　Research paper (scientific journal)

Highly sensitive detection of ESR1 mutations in cell-free DNA from patients with metastatic breast cancer using molecular barcode sequencing

Nanae Masunaga, Naofumi Kagara, Daisuke Motooka, Shota Nakamura, Tomohiro Miyake, Tomonori Tanei, Yasuto Naoi, Masafumi Shimoda, Kenzo Shimazu, Seung Jin Kim, Shinzaburo Noguchi

Breast Cancer Research and Treatment　Vol. 167　No. 1　p. 49-58　2018/01/01　Research paper (scientific journal)

Hydrogen-rich saline regulates intestinal barrier dysfunction, dysbiosis, and bacterial translocation in a murine model of sepsis

Mitsunori Ikeda, Kentaro Shimizu, Hiroshi Ogura, Takashi Kurakawa, Eiji Umemoto, Daisuke Motooka, Shota Nakamura, Naotsugu Ichimaru, Kiyoshi Takeda, Shiro Takahara, Hirano Shin-Ichi, Takeshi Shimazu

Shock　Vol. 50　No. 6　p. 640-647　2018　Research paper (scientific journal)

Clonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus

Shuhei Sakakibara, Takao Arimori, Kazuo Yamashita, Hideyuki Jinzai, Daisuke Motooka, Shota Nakamura, Songling Li, Kazuya Takeda, Jun Katayama, Marwa Ali El Hussien, Masashi Narazaki, Toshio Tanaka, Daron M. Standley, Junichi Takagi, Hitoshi Kikutani

Scientific Reports　Vol. 7　No. 1　2017/12/01　Research paper (scientific journal)

Mutation accumulation under UV radiation in Escherichia coli

Atsushi Shibai, Yusuke Takahashi, Yuka Ishizawa, Daisuke Motooka, Shota Nakamura, Bei Wen Ying, Saburo Tsuru

Scientific Reports　Vol. 7　No. 1　2017/12/01　Research paper (scientific journal)

Suppression of HBV replication by the expression of nickase-and nuclease dead-Cas9

Takeshi Kurihara, Takasuke Fukuhara, Chikako Ono, Satomi Yamamoto, Kentaro Uemura, Toru Okamoto, Masaya Sugiyama, Daisuke Motooka, Shota Nakamura, Masato Ikawa, Masashi Mizokami, Yoshihiko Maehara, Yoshiharu Matsuura

Scientific Reports　Vol. 7　No. 1　2017/12/01　Research paper (scientific journal)

Clonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus

Shuhei Sakakibara, Takao Arimori, Kazuo Yamashita, Hideyuki Jinzai, Daisuke Motooka, Shota Nakamura, Songling Li, Kazuya Takeda, Jun Katayama, Marwa Ali El Hussien, Masashi Narazaki, Toshio Tanaka, Daron M. Standley, Junichi Takagi, Hitoshi Kikutani

SCIENTIFIC REPORTS　Vol. 7　No. 1　2017/11　Research paper (scientific journal)

Sensitivity of next-generation sequencing metagenomic analysis for detection of RNA and DNA viruses in cerebrospinal fluid: The confounding effect of background contamination

Iwona Bukowska-Ośko, Karol Perlejewski, Shota Nakamura, Daisuke Motooka, Tomasz Stokowy, Joanna Kosińska, Marta Popiel, Rafał Płoski, Andrzej Horban, Dariusz Lipowski, Kamila Caraballo Cortés, Agnieszka Pawełczyk, Urszula Demkow, Adam Stępień, Marek Radkowski, Tomasz Laskus

Advances in Experimental Medicine and Biology　Vol. 944　p. 53-62　2017/11/01　Research paper (scientific journal)

The cell envelope-associated phospholipid-binding protein LmeA is required for mannan polymerization in mycobacteria

Kathryn C. Rahlwes, Stephanie A. Ha, Daisuke Motooka, Jacob A. Mayfield, Lisa R. Baumoel, Justin N. Strickland, Ana P. Torres-Ocampo, Shota Nakamura, Yasu S. Morita

Journal of Biological Chemistry　Vol. 292　No. 42　p. 17407-17417　2017/10/20　Research paper (scientific journal)

Genome-Wide Screening Uncovers the Significance of N-sulfation of Heparan Sulfate as a Host Cell Factor for Chikungunya Virus Infection

Atsushi Tanaka, Uranan Tumkosit, Shota Nakamura, Daisuke Motooka, Natsuko Kishishita, Thongkoon Priengprom, Areerat Sa-ngasang, Taroh Kinoshita, Naokazu Takeda, Yusuke Maeda

2017/10

BEC, a novel enterotoxin produced by non-CPE producing Type A Clostridium perfringens, is a cause of human gastroenteritis

Shinya Yonogi, Shigeaki Matsuda, Takao Kawai, Tomoko Yoda, Tetsuya Harada, Yuko Kumeda, Kazuyoshi Gotoh, Hirotaka Hiyoshi, Kazuki Kawahara, Ryota Munetomo, Hiroya Oki, Shota Nakamura, Toshio Kodama, Tetsuya Iida

2017/09

Genetic characterization of bla<inf>NDM</inf>-harboring plasmids in carbapenem-resistant Escherichia coli from Myanmar

Yo Sugawara, Yukihiro Akeda, Noriko Sakamoto, Dan Takeuchi, Daisuke Motooka, Shota Nakamura, Hideharu Hagiya, Norihisa Yamamoto, Isao Nishi, Hisao Yoshida, Kazuhisa Okada, Khwar Nyo Zin, Mya Mya Aye, Kazunori Tonomo, Shigeyuki Hamada

PLoS ONE　Vol. 12　No. 9　2017/09　Research paper (scientific journal)

Indigo Naturalis ameliorates murine dextran sodium sulfate-induced colitis via aryl hydrocarbon receptor activation

Shoichiro Kawai, Hideki Iijima, Shinichiro Shinzaki, Satoshi Hiyama, Toshio Yamaguchi, Manabu Araki, Shuko Iwatani, Eri Shiraishi, Akira Mukai, Takahiro Inoue, Yoshito Hayashi, Masahiko Tsujii, Daisuke Motooka, Shota Nakamura, Tetsuya Iida, Tetsuo Takehara

Journal of Gastroenterology　Vol. 52　No. 8　p. 904-919　2017/08/01　Research paper (scientific journal)

The clinical and phylogenetic investigation for a nosocomial outbreak of respiratory syncytial virus infection in an adult hemato-oncology unit

Daijiro Nabeya, Takeshi Kinjo, Gretchen Lynn Parrott, Ayako Uehara, Daisuke Motooka, Shota Nakamura, Saifun Nahar, Sawako Nakachi, Masashi Nakamatsu, Sakuko Maeshiro, Shusaku Haranaga, Masao Tateyama, Takeaki Tomoyose, Hiroaki Masuzaki, Toshihiro Horii, Jiro Fujita

Journal of Medical Virology　Vol. 89　No. 8　p. 1364-1372　2017/08　Research paper (scientific journal)

メタゲノム解析による病原体検出ー現状と課題ー

中村 昇太, 飯田 哲也

化学療法の領域　Vol. 33　No. 7　p. 119-125　2017/07

Genome-wide screening uncovers the significance of N-sulfation of heparan sulfate as a host cell factor for chikungunya virus infection

Atsushi Tanaka, Uranan Tumkosit, Shota Nakamura, Daisuke Motooka, Natsuko Kishishita, Thongkoon Priengprom, Areerat Sa-ngasang, Taroh Kinoshita, Naokazu Takeda, Yusuke Maeda

Journal of Virology　Vol. 91　No. 13　2017/07/01　Research paper (scientific journal)

Plasmid dynamics in Vibrio parahaemolyticus strains related to shrimp Acute Hepatopancreatic Necrosis Syndrome (AHPNS)

Chonchanok Theethakaew, Shota Nakamura, Daisuke Motooka, Shigeaki Matsuda, Toshio Kodama, Kaknokrat Chonsin, Orasa Suthienkul, Tetsuya Iida

Infection, Genetics and Evolution　Vol. 51　p. 211-218　2017/07/01　Research paper (scientific journal)

Phenotype–genotype correlations of PIGO deficiency with variable phenotypes from infantile lethality to mild learning difficulties

Junpei Tanigawa, Haruka Mimatsu, Seiji Mizuno, Nobuhiko Okamoto, Daisuke Fukushi, Koji Tominaga, Hiroyuki Kidokoro, Yukako Muramatsu, Eriko Nishi, Shota Nakamura, Daisuke Motooka, Noriko Nomura, Kiyoshi Hayasaka, Tetsuya Niihori, Yoko Aoki, Shin Nabatame, Masahiro Hayakawa, Jun Natsume, Keiichi Ozono, Taroh Kinoshita, Nobuaki Wakamatsu, Yoshiko Murakami

Human Mutation　Vol. 38　No. 7　p. 805-815　2017/07　Research paper (scientific journal)

重症軟部組織感染症に対し起炎菌同定を行った一例

吉澤 秀憲, 片田 竜一, 元岡 大祐, 中間 健太郎, 石田 季子, 中村 昇太, 松本 博志

日本法医学雑誌　Vol. 71　No. 1　p. 57-57　2017/05

Characterization of miR-122-independent propagation of HCV

Chikako Ono, Takasuke Fukuhara, Daisuke Motooka, Shota Nakamura, Daisuke Okuzaki, Satomi Yamamoto, Tomokazu Tamura, Hiroyuki Mori, Asuka Sato, Kentaro Uemura, Yuzy Fauzyah, Takeshi Kurihara, Takahiro Suda, Akira Nishio, Su Su Hmwe, Toru Okamoto, Tomohide Tatsumi, Tetsuo Takehara, Kazuaki Chayama, Takaji Wakita, Kazuhiko Koike, Yoshiharu Matsuura

PLoS Pathogens　Vol. 13　No. 5　2017/05　Research paper (scientific journal)

Quasispecies of Hepatitis C Virus Participate in Cell-Specific Infectivity

Takasuke Fukuhara, Satomi Yamamoto, Chikako Ono, Shota Nakamura, Daisuke Motooka, Hiroyuki Mori, Takeshi Kurihara, Asuka Sato, Tomokazu Tamura, Takashi Motomura, Toru Okamoto, Michio Imamura, Toru Ikegami, Tomoharu Yoshizumi, Yuji Soejima, Yoshihiko Maehara, Kazuaki Chayama, Yoshiharu Matsuura

Scientific Reports　Vol. 7　2017/03/22　Research paper (scientific journal)

Erratum: Guidance of regulatory T cell development by Satb1-dependent super-enhancer establishment

Yohko Kitagawa, Naganari Ohkura, Yujiro Kidani, Alexis Vandenbon, Keiji Hirota, Ryoji Kawakami, Keiko Yasuda, Daisuke Motooka, Shota Nakamura, Motonari Kondo, Ichiro Taniuchi, Terumi Kohwi-Shigematsu, Shimon Sakaguchi

Nature immunology　Vol. 18　No. 4　2017/03/22　Research paper (scientific journal)

A cluster of fatal Tick-borne encephalitis virus infection in organ transplant setting

Dariusz Lipowski, Marta Popiel, Karol Perlejewski, Shota Nakamura, Iwona Bukowska-Ośko, Ewa Rzadkiewicz, Tomasz Dzieciątkowski, Anna Milecka, Wojciech Wenski, Michał Ciszek, Alicja Dêbska-Ślizieñ, Ewa Ignacak, Kamila Caraballo Cortes, Agnieszka Pawełczyk, Andrzej Horban, Marek Radkowski, Tomasz Laskus

Journal of Infectious Diseases　Vol. 215　No. 6　p. 896-901　2017/03/15　Research paper (scientific journal)

Streptococcus tigurinusによる軟部組織感染症に対しネクロプシーを行った一例

吉澤 秀憲, 元岡 大祐, 中村 昇太, 森井 英一, 松本 博志

日本病理学会会誌　Vol. 106　No. 1　p. 479-479　2017/03

Postnatal changes in the relative abundance of intestinal Lactobacillus spp. In newborn calves

Tadashi Takino, Yuko Kato-Mori, Daisuke Motooka, Shota Nakamura, Tetsuya Iida, Katsuro Hagiwara

Journal of Veterinary Medical Science　Vol. 79　No. 3　p. 452-455　2017/03　Research paper (scientific journal)

Fungal ITS1 deep-sequencing strategies to reconstruct the composition of a 26-species community and evaluation of the gut mycobiota of healthy Japanese individuals

Daisuke Motooka, Kosuke Fujimoto, Reiko Tanaka, Takashi Yaguchi, Kazuyoshi Gotoh, Yuichi Maeda, Yoki Furuta, Takashi Kurakawa, Naohisa Goto, Teruo Yasunaga, Masashi Narazaki, Atsushi Kumanogoh, Toshihiro Horii, Tetsuya Iida, Kiyoshi Takeda, Shota Nakamura

Frontiers in Microbiology　Vol. 8　No. FEB　2017/02/15　Research paper (scientific journal)

生体RNAシークエンス分析から明らかになったBordetella pertussis感染に対する新規の抗原(In vivo RNA-seq reveals novel antigens against Bordetella pertussis infection)

鈴木 孝一朗, 新澤 直明, 元岡 大祐, 中村 昇太, 石垣 佳祐, 生田 和良, 山西 弘一, 堀口 安彦

日本細菌学雑誌　Vol. 72　No. 1　p. 60-60　2017/02

Type IV pilus structure and assembly of human enterotoxigenic Escherichia coli

Hiroya Oki, Kazuki Kawahara, Shunsuke Fukakusa, Takuya Yoshida, Takahiro Maruo, Yuji Kobayashi, Tetsuya Iida, Tadayasu Ohkubo, Shota Nakamura

2017/02

Guidance of regulatory T cell development by Satb1-dependent super-enhancer establishment

Yohko Kitagawa, Naganari Ohkura, Yujiro Kidani, Alexis Vandenbon, Keiji Hirota, Ryoji Kawakami, Keiko Yasuda, Daisuke Motooka, Shota Nakamura, Motonari Kondo, Ichiro Taniuchi, Terumi Kohwi-Shigematsu, Shimon Sakaguchi

Nature Immunology　Vol. 18　No. 2　p. 173-183　2017/02/01　Research paper (scientific journal)

Whole-genome sequence of Streptococcus tigurinus strain osk_001, isolated from postmortem material

Hidenori Yoshizawa, Daisuke Motooka, Ryuichi Katada, Yuki Matsumoto, Shota Nakamura, Eiichi Morii, Tetsuya Iida, Hiroshi Matsumoto

Genome Announcements　Vol. 5　No. 35　2017　Research paper (scientific journal)

Draft genome sequence of Plasmodium gonderi, a malaria parasite of African Old World monkeys

Hajime Honma, Satoru Kawai, Daisuke Motooka, Shota Nakamura, Takahiro Tougan, Toshihiro Horii, Nobuko Arisue

Genome Announcements　Vol. 5　No. 28　p. e00612-17　2017　Research paper (scientific journal)

Herpes zoster laryngitis in a patient treated with fingolimod

Hideharu Hagiya, Hisao Yoshida, Mikito Shimizu, Daisuke Motooka, Shota Nakamura, Tetsuya Iida, Norihisa Yamamoto, Yukihiro Akeda, Kazunori Tomono

JOURNAL OF INFECTION AND CHEMOTHERAPY　Vol. 22　No. 12　p. 830-832　2016/12　Research paper (scientific journal)

Herpes zoster laryngitis in a patient treated with fingolimod

Hideharu Hagiya, Hisao Yoshida, Mikito Shimizu, Daisuke Motooka, Shota Nakamura, Tetsuya Iida, Norihisa Yamamoto, Yukihiro Akeda, Kazunori Tomono

Journal of Infection and Chemotherapy　Vol. 22　No. 12　p. 830-832　2016/12/01　Research paper (scientific journal)

Crystal structure of the ADP-ribosylating component of BEC, the binary enterotoxin of Clostridium perfringens

Kazuki Kawahara, Shinya Yonogi, Ryota Munetomo, Hiroya Oki, Takuya Yoshida, Yuko Kumeda, Shigeaki Matsuda, Toshio Kodama, Tadayasu Ohkubo, Tetsuya Iida, Shota Nakamura

Biochemical and Biophysical Research Communications　Vol. 480　No. 2　p. 261-267　2016/11/11　Research paper (scientific journal)

Dysbiosis Contributes to Arthritis Development via Activation of Autoreactive T Cells in the Intestine

Yuichi Maeda, Takashi Kurakawa, Eiji Umemoto, Daisuke Motooka, Yoshinaga Ito, Kazuyoshi Gotoh, Keiji Hirota, Masato Matsushita, Yoki Furuta, Masashi Narazaki, Noriko Sakaguchi, Hisako Kayama, Shota Nakamura, Tetsuya Iida, Yukihiko Saeki, Atsushi Kumanogoh, Shimon Sakaguchi, Kiyoshi Takeda

Arthritis and Rheumatology　Vol. 68　No. 11　p. 2646-2661　2016/11/01　Research paper (scientific journal)

Crystal structure of the ADP-ribosylating component of BEC, the binary enterotoxin of Clostridium perfringens

Kazuki Kawahara, Shinya Yonogi, Ryota Munetomo, Hiroya Oki, Takuya Yoshida, Yuko Kumeda, Shigeaki Matsuda, Toshio Kodama, Tadayasu Ohkubo, Tetsuya Iida, Shota Nakamura

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS　Vol. 480　No. 2　p. 261-267　2016/11　Research paper (scientific journal)

Dysbiosis Contributes to Arthritis Development via Activation of Autoreactive T Cells in the Intestine

Yuichi Maeda, Takashi Kurakawa, Eiji Umemoto, Daisuke Motooka, Yoshinaga Ito, Kazuyoshi Gotoh, Keiji Hirota, Masato Matsushita, Yoki Furuta, Masashi Narazaki, Noriko Sakaguchi, Hisako Kayama, Shota Nakamura, Tetsuya Iida, Yukihiko Saeki, Atsushi Kumanogoh, Shimon Sakaguchi, Kiyoshi Takeda

ARTHRITIS & RHEUMATOLOGY　Vol. 68　No. 11　p. 2646-2661　2016/11　Research paper (scientific journal)

Enterococcus saigonensis sp. nov., isolated from retail chicken meat and liver

Tetsuya Harada, Van Chinh Dang, Do Phuc Nguyen, Thi Anh Dao Nguyen, Mitsuo Sakamoto, Moriya Ohkuma, Daisuke Motooka, Shota Nakamura, Kotaro Uchida, Michio Jinnai, Shinya Yonogi, Ryuji Kawahara, Masashi Kanki, Takao Kawai, Yuko Kumeda, Yoshimasa Yamamoto

International Journal of Systematic and Evolutionary Microbiology　Vol. 66　No. 10　p. 3779-3785　2016/10　Research paper (scientific journal)

G28A mutation is necessary for an efficient propagation of HCV in miR-122 deficient condition

Chikako Ono, Takasuke Fukuhara, Daisuke Motooka, Shota Nakamura, Satomi Yamamoto, Hiroyuki Mori, Kentaro Uemura, Toru Okamoto, Su Su Hmwe, Kazuaki Chayama, Takaji Wakita, Kazuhiko Koike, Yoshiharu Matsuura

2016/10　Research paper (international conference proceedings)

G28A mutation facilitates an efficient propagation of HCV in miR-122-independent manner

Chikako Ono, Takasuke Fukuhara, Daisuke Motooka, Shota Nakamura, Satomi Yamamoto, Hiroyuki Mori, Kentaro Uemura, Toru Okamoto, Su Su Hmwe, Kazuaki Chayama, Takaji Wakita, Kazuhiko Koike, Yoshiharu Matsuura

2016/10　Research paper (other academic)

From Bedside to Lab,from Lab to Bedside 救急医学研究を発展させるために 侵襲病態における腸内フローラに関する研究と臨床への応用

池田 光憲, 清水 健太郎, 倉川 尚, 梅本 英司, 元岡 大祐, 中村 昇太, 小倉 裕司, 嶋津 岳士

日本救急医学会雑誌　Vol. 27　No. 9　p. 328-328　2016/09

Temporal dynamics of bacterial microbiota in the human oral cavity determined using an in situ model of dental biofilms

Nanako Wake, Yoko Asahi, Yuichiro Noiri, Mikako Hayashi, Daisuke Motooka, Shota Nakamura, Kazuyoshi Gotoh, Jiro Miura, Hiroyuki Machi, Tetsuya Iida, Shigeyuki Ebisu

npj Biofilms and Microbiomes　Vol. 2　2016/08/10　Research paper (scientific journal)

Identification of nasal resident bacteria as causative allergens in eosinophilic chronic rhinosinusitis

K. Takeda, S. Sakakibara, D. Motooka, S. Nakamura, K. Yamashita, D. M. Standley, M. Hayama, T. Shikina, H. Inohara, H. Kikutani

EUROPEAN JOURNAL OF IMMUNOLOGY　Vol. 46　p. 1114-1114　2016/08

LATS2 positively regulates polycomb repressive complex 2

Kosuke Torigata, Okuzaki Daisuke, Satomi Mukai, Akira Hatanaka, Fumiharu Ohka, Daisuke Motooka, Shota Nakamura, Yasuyuki Ohkawa, Norikazu Yabuta, Yutaka Kondo, Hiroshi Nojima

PLoS ONE　Vol. 11　No. 7　2016/07/01　Research paper (scientific journal)

Metagenomic Analysis Reveals Dynamic Changes of Whole Gut Microbiota in the Acute Phase of Intensive Care Unit Patients

Masahiro Ojima, Daisuke Motooka, Kentaro Shimizu, Kazuyoshi Gotoh, Ayumi Shintani, Kazuhisa Yoshiya, Shota Nakamura, Hiroshi Ogura, Tetsuya Iida, Takeshi Shimazu

Digestive Diseases and Sciences　Vol. 61　No. 6　p. 1628-1634　2016/06/01　Research paper (scientific journal)

Lypd8 promotes the segregation of flagellated microbiota and colonic epithelia

Ryu Okumura, Takashi Kurakawa, Takashi Nakano, Hisako Kayama, Makoto Kinoshita, Daisuke Motooka, Kazuyoshi Gotoh, Taishi Kimura, Naganori Kamiyama, Takashi Kusu, Yoshiyasu Ueda, Hong Wu, Hideki Iijima, Soumik Barman, Hideki Osawa, Hiroshi Matsuno, Junichi Nishimura, Yusuke Ohba, Shota Nakamura, Tetsuya Iida, Masahiro Yamamoto, Eiji Umemoto, Koichi Sano, Kiyoshi Takeda

NATURE　Vol. 532　No. 7597　p. 117-+　2016/04　Research paper (scientific journal)

Lypd8 promotes the segregation of flagellated microbiota and colonic epithelia

Ryu Okumura, Takashi Kurakawa, Takashi Nakano, Hisako Kayama, Makoto Kinoshita, Daisuke Motooka, Kazuyoshi Gotoh, Taishi Kimura, Naganori Kamiyama, Takashi Kusu, Yoshiyasu Ueda, Hong Wu, Hideki Iijima, Soumik Barman, Hideki Osawa, Hiroshi Matsuno, Junichi Nishimura, Yusuke Ohba, Shota Nakamura, Tetsuya Iida, Masahiro Yamamoto, Eiji Umemoto, Koichi Sano, Kiyoshi Takeda

Nature　Vol. 532　No. 7597　p. 117-121　2016/04　Research paper (scientific journal)

Homo-trimeric Structure of the Type IVb Minor Pilin CofB Suggests Mechanism of CFA/III Pilus Assembly in Human Enterotoxigenic Escherichia coli

Kazuki Kawahara, Hiroya Oki, Shunsuke Fukakusa, Takuya Yoshida, Tomoya Imai, Takahiro Maruno, Yuji Kobayashi, Daisuke Motooka, Tetsuya Iida, Tadayasu Ohkubo, Shota Nakamura

Journal of Molecular Biology　Vol. 428　No. 6　p. 1209-1226　2016/03/27　Research paper (scientific journal)

生体におけるRNAシークエンス分析から明らかになった百日咳菌Bordetella pertussisの宿主内における感染に関連した遺伝子発現パターン(In vivo RNA-seq revealed infection-linked expression pattern of Bordetella pertussis within host)

新澤 直明, 鈴木 孝一朗, 元岡 大祐, 中村 昇太, 堀口 安彦

日本細菌学雑誌　Vol. 71　No. 1　p. 133-133　2016/02

Reductive evolution towards primitive life: What will we see?

Atsushi Shibai, Daisuke Motooka, Shota Nakamura, Saburo Tsuru

Proceedings of the Artificial Life Conference 2016, ALIFE 2016　p. 188-189　2016　Research paper (international conference proceedings)

An epidemiological analysis of summer influenza epidemics in Okinawa

Satoko Sunagawa, Yoshikazu Iha, Katsuya Taira, Sho Okano, Takeshi Kinjo, Futoshi Higa, Kazufumi Kuba, Masao Tateyama, Katsunori Nakamura, Shota Nakamura, Daisuke Motooka, Toshihiro Horii, Gretchen L. Parrott, Jiro Fujita

Internal Medicine　Vol. 55　No. 24　p. 3579-3584　2016　Research paper (scientific journal)

Metagenomic analysis of cerebrospinal fluid from patients with multiple sclerosis

Karol Perlejewski, Iwona Bukowska-Ośko, Shota Nakamura, Daisuke Motooka, Tomasz Stokowy, Rafał Płoski, Małgorzata Rydzanicz, Beata Zakrzewska-Pniewska, Aleksandra Podlecka-Piętowska, Monika Nojszewska, Anna Gogol, Kamila Caraballo Cortés, Urszula Demkow, Adam Stępień, Tomasz Laskus, Marek Radkowski

Advances in Experimental Medicine and Biology　Vol. 935　p. 89-98　2016　Part of collection (book)

Interaction of Vibrio parahaemolyticus diarrheal T3SS effector VopV with actin filaments

Mitsuhiro Nishimura, Takashi Fujii, Hirotaka Hiyoshi, Fumiaki Makino, Hajime Inoue, Daisuke Motooka, Toshio Kodama, Tadayasu Ohkubo, Yuji Kobayashi, Shota Nakamura, Keiichi Namba, Tetsuya Iida

2016/01　Research paper (international conference proceedings)

A novel PIGN mutation and prenatal diagnosis of inherited glycosylphosphatidylinositol deficiency

Taku Nakagawa, Mariko Taniguchi-Ikeda, Yoshiko Murakami, Shota Nakamura, Daisuke Motooka, Tomomi Emoto, Wataru Satake, Masahiro Nishiyama, Daisaku Toyoshima, Naoya Morisada, Satoshi Takada, Shinya Tairaku, Nobuhiko Okamoto, Ichiro Morioka, Hiroki Kurahashi, Tatsushi Toda, Taroh Kinoshita, Kazumoto Iijima

American Journal of Medical Genetics, Part A　Vol. 170　No. 1　p. 183-188　2016/01/01　Research paper (scientific journal)

Next-generation sequencing (NGS) in the identification of encephalitis-causing viruses: Unexpected detection of human herpesvirus 1 while searching for RNA pathogens

Karol Perlejewski, Marta Popiel, Tomasz Laskus, Shota Nakamura, Daisuke Motooka, Tomasz Stokowy, Dariusz Lipowski, Agnieszka Pollak, Urszula Lechowicz, Kamila Caraballo Cortés, Adam Stepień, Marek Radkowski, Iwona Bukowska-Ośko

Journal of Virological Methods　Vol. 226　p. 1-6　2015/12/15　Research paper (scientific journal)

Structural basis for dimer formation of human condensin structural maintenance of chromosome proteins and its implications for single-stranded DNA recognition

Susumu Uchiyama, Kazuki Kawahara, Yuki Hosokawa, Shunsuke Fukakusa, Hiroya Oki, Shota Nakamura, Yukiko Kojima, Masanori Noda, Rie Takino, Yuya Miyahara, Takahiro Maruno, Yuji Kobayashi, Tadayasu Ohkubo, Kiichi Fukui

Journal of Biological Chemistry　Vol. 290　No. 49　p. 29461-29477　2015/12/04　Research paper (scientific journal)

Genomic confirmation of nutrient-dependent mutability of mutators in Escherichia coli

Saburo Tsuru, Yuuka Ishizawa, Atsushi Shibai, Yusuke Takahashi, Daisuke Motooka, Shota Nakamura, Tetsuya Yomo

Genes to Cells　Vol. 20　No. 12　p. 972-981　2015/12/01　Research paper (scientific journal)

Functional specialization in regulation and quality control in thermal adaptive evolution

Kazuma Yama, Yuki Matsumoto, Yoshie Murakami, Shigeto Seno, Hideo Matsuda, Kazuyoshi Gotoh, Daisuke Motooka, Shota Nakamura, Bei Wen Ying, Tetsuya Yomo

Genes to Cells　Vol. 20　No. 11　p. 943-955　2015/11　Research paper (scientific journal)

Plasmodium berghei ANKA causes intestinal malaria associated with dysbiosis

Tomoyo Taniguchi, Eiji Miyauchi, Shota Nakamura, Makoto Hirai, Kazutomo Suzue, Takashi Imai, Takahiro Nomura, Tadashi Handa, Hiroko Okada, Chikako Shimokawa, Risa Onishi, Alex Olia, Jun Hirata, Haruyoshi Tomita, Hiroshi Ohno, Toshihiro Horii, Hajime Hisaeda

Scientific Reports　Vol. 5　p. 15699-15710　2015/10/27　Research paper (scientific journal)

Genome-wide screening of genes required for glycosylphosphatidylinositol biosynthesis

Yao Rong, Shota Nakamura, Tetsuya Hirata, Daisuke Motooka, Yi Shi Liu, Zeng An He, Xiao Dong Gao, Yusuke Maeda, Taroh Kinoshita, Morihisa Fujita

PLoS ONE　Vol. 10　No. 9　2015/09/18　Research paper (scientific journal)

Post-Golgi anterograde transport requires GARP-dependent endosome-to-TGN retrograde transport

Tetsuya Hirata, Morihisa Fujita, Shota Nakamura, Kazuyoshi Gotoh, Daisuke Motooka, Yoshiko Murakami, Yusuke Maeda, Taroh Kinoshita

Molecular Biology of the Cell　Vol. 26　No. 17　p. 3071-3084　2015/09/01　Research paper (scientific journal)

Baseline assessment of mesophotic reefs of the Vitória-Trindade Seamount Chain based on water quality, microbial diversity, benthic cover and fish biomass data

Pedro M. Meirelles, Gilberto M. Amado-Filho, Guilherme H. Pereira-Filho, Hudson T. Pinheiro, Rodrigo L. De Moura, Jean Christophe Joyeux, Eric F. Mazzei, Alex C. Bastos, Robert A. Edwards, Elizabeth Dinsdale, Rodolfo Paranhos, Eidy O. Santos, Tetsuya Iida, Kazuyoshi Gotoh, Shota Nakamura, Tomoo Sawabe, Carlos E. Rezende, Luiz M.R. Gadelha, Ronaldo B. Francini-Filho, Cristiane Thompson, Fabiano L. Thompson

PLoS ONE　Vol. 10　No. 6　2015/06/19　Research paper (scientific journal)

A repeat unit of Vibrio diarrheal T3S effector subverts cytoskeletal actin homeostasis via binding to interstrand region of actin filaments

Mitsuhiro Nishimura, Takashi Fujii, Hirotaka Hiyoshi, Fumiaki Makino, Hajime Inoue, Daisuke Motooka, Toshio Kodama, Tadayasu Ohkubo, Yuji Kobayashi, Shota Nakamura, Keiichi Namba, Tetsuya Iida

Scientific Reports　Vol. 5　2015/06/03　Research paper (scientific journal)

Cloning, expression, purification, crystallization and X-ray crystallographic analysis of CofB, the minor pilin subunit of CFA/III from human enterotoxigenic Escherichia coli

Kazuki Kawahara, Hiroya Oki, Shunsuke Fukakusa, Takahiro Maruno, Yuji Kobayashi, Daisuke Motooka, Tooru Taniguchi, Takeshi Honda, Tetsuya Iida, Shota Nakamura, Tadayasu Ohkubo

Acta Crystallographica Section F:Structural Biology Communications　Vol. 71　p. 663-667　2015/06/01　Research paper (scientific journal)

Cloning, expression, purification, crystallization and X-ray crystallographic analysis of CofB, the minor pilin subunit of CFA/III from human enterotoxigenic Escherichia coli

Kazuki Kawahara, Hiroya Oki, Shunsuke Fukakusa, Takahiro Maruno, Yuji Kobayashi, Daisuke Motooka, Tooru Taniguchi, Takeshi Honda, Tetsuya Iida, Shota Nakamura, Tadayasu Ohkubo

ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS　Vol. 71　No. Pt 6　p. 663-667　2015/06　Research paper (scientific journal)

Periodic pattern of genetic and fitness diversity during evolution of an artificial cell-like system

Norikazu Ichihashi, Takuyo Aita, Daisuke Motooka, Shota Nakamura, Tetsuya Yomo

Molecular Biology and Evolution　Vol. 32　No. 12　p. 3205-3214　2015　Research paper (scientific journal)

Viral detection by high-throughput sequencing

Daisuke Motooka, Shota Nakamura, Katsuro Hagiwara, Takaaki Nakaya

Methods in Molecular Biology　Vol. 1236　p. 125-134　2015　Research paper (scientific journal)

Emergence of infectious malignant thrombocytopenia in Japanese macaques (Macaca fuscata) by SRV-4 after transmission to a novel host

Munehiro Okamoto, Takayuki Miyazawa, Shigeru Morikawa, Fumiko Ono, Shota Nakamura, Eiji Sato, Tomoyuki Yoshida, Rokusuke Yoshikawa, Kouji Sakai, Tetsuya Mizutani, Noriyo Nagata, Jun Ichiro Takano, Sachi Okabayashi, Masataka Hamano, Koji Fujimoto, Takaaki Nakaya, Tetsuya Iida, Toshihiro Horii, Takako Miyabe-Nishiwaki, Akino Watanabe, Akihisa Kaneko, Akatsuki Saito, Atsushi Matsui, Toshiyuki Hayakawa, Juri Suzuki, Hirofumi Akari, Tetsuro Matsuzawa, Hirohisa Hirai

Scientific Reports　Vol. 5　2015　Research paper (scientific journal)

Amphipathic α-Helices in Apolipoproteins Are Crucial to the Formation of Infectious Hepatitis C Virus Particles

Takasuke Fukuhara, Masami Wada, Shota Nakamura, Chikako Ono, Mai Shiokawa, Satomi Yamamoto, Takashi Motomura, Toru Okamoto, Daisuke Okuzaki, Masahiro Yamamoto, Izumu Saito, Takaji Wakita, Kazuhiko Koike, Yoshiharu Matsuura

PLoS Pathogens　Vol. 10　No. 12　2014/12/01　Research paper (scientific journal)

Complete nucleotide sequence of a plasmid containing the botulinum neurotoxin gene in Clostridium botulinum type B strain 111 isolated from an infant patient in Japan

Koji Hosomi, Yoshihiko Sakaguchi, Tomoko Kohda, Kazuyoshi Gotoh, Daisuke Motooka, Shota Nakamura, Kaoru Umeda, Tetsuya Iida, Shunji Kozaki, Masafumi Mukamoto

Molecular Genetics and Genomics　Vol. 289　No. 6　p. 1267-1274　2014/11/19　Research paper (scientific journal)

Endosomes-to-TGN retrograde transport mediated by GARP is required for post-Golgi anterograde transport and glycosylation

Tetsuya Hirata, Morihisa Fujita, Shota Nakamura, Kazuyoshi Gotoh, Daisuke Motooka, Yoshiko Murakami, Yusuke Maeda, Taroh Kinoshita

GLYCOBIOLOGY　Vol. 24　No. 11　p. 1188-1189　2014/11　Research paper (international conference proceedings)

Virus purification and enrichment by hydroxyapatite chromatography on a chip

Miyako Niimi, Taisuke Masuda, Kunihiro Kaihatsu, Nobuo Kato, Shota Nakamura, Takaaki Nakaya, Fumihito Arai

Sensors and Actuators, B: Chemical　Vol. 201　p. 185-190　2014/10/01　Research paper (scientific journal)

Amphipathic α-helices of Exchangeable Apolipoproteins Paticipate in the Particle Formation of HCV

Takasuke Fukuhara, Masami Wada, Shota Nakamura, Chikako Ono, Satomi Yamamoto, Mai Shiokawa, Toru Okamoto, Kazuhiko Koike, Yoshiharu Matsuura

2014/09　Research paper (international conference proceedings)

Amphipathic α-helices of Exchangeable Apolipoproteins Paticipate in the Particle Formation of Hepatitis C Virus

Takasuke Fukuhara, Masami Wada, Shota Nakamura, Chikako Ono, Satomi Yamamoto, Mai Shiokawa, Toru Okamoto, Kazuhiko Koike, Yoshiharu Matsuura

2014/09　Research paper (international conference proceedings)

Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes

Mari Miyamoto, Daisuke Motooka, Kazuyoshi Gotoh, Takamasa Imai, Kazutoshi Yoshitake, Naohisa Goto, Tetsuya Iida, Teruo Yasunaga, Toshihiro Horii, Kazuharu Arakawa, Masahiro Kasahara, Shota Nakamura

BMC Genomics　Vol. 15　No. 1　2014/08/21　Research paper (scientific journal)

Generation of rodent malaria parasites with a high mutation rate by destructing proofreading activity of DNA polymerase δ

Hajime Honma, Makoto Hirai, Shota Nakamura, Hassan Hakimi, Shin Ichiro Kawazu, Nirianne M.Q. Palacpac, Hajime Hisaeda, Hiroyuki Matsuoka, Satoru Kawai, Hiroyoshi Endo, Teruo Yasunaga, J. U.N. Ohashi, Toshihiro Mita, Toshihiro Horii, Mitsuru Furusawa, Kazuyuki Tanabe

DNA Research　Vol. 21　No. 4　p. 439-446　2014/08　Research paper (scientific journal)

Exchageable apolipoproteins participate in the particle formation of hepatitis C virus

Takasuke Fukuhara, Masami Wada, Shota Nakamura, Chikako Ono, Satomi Yamamoto, Mai Shiokawa, Toru Okamoto, Yoshiharu Matsuura

2014/06　Research paper (international conference proceedings)

BEC, a Novel Enterotoxin of Clostridium perfringens Found in Human Clinical Isolates from Acute Gastroenteritis Outbreaks

Shinya Yonogi, Shigeaki Matsuda, Takao Kawai, Tomoko Yoda, Tetsuya Harada, Yuko Kumeda, Kazuyoshi Gotoh, Hirotaka Hiyoshi, Shota Nakamura, Toshio Kodama, Tetsuya Iida

INFECTION AND IMMUNITY　Vol. 82　No. 6　p. 2390-2399　2014/06　Research paper (scientific journal)

Oral pathobiont induces systemic inflammation and metabolic changes associated with alteration of gut microbiota

Kei Arimatsu, Hitomi Yamada, Haruna Miyazawa, Takayoshi Minagawa, Mayuka Nakajima, Mark I. Ryder, Kazuyoshi Gotoh, Daisuke Motooka, Shota Nakamura, Tetsuya Iida, Kazuhisa Yamazaki

Scientific Reports　Vol. 4　No. 4　2014/05/06　Research paper (scientific journal)

Endosome-to-TGN retrograde transport mediated by GARP affects post-Golgi anterograde transport and glycosylation

Tetsuya Hirata, Morihisa Fujita, Shota Nakamura, Yoshiko Murakami, Yusuke Mada, Taroh Kinoshsita

2014/05　Research paper (other academic)

Application of SMRT sequencing to infectious diseases

中村 昇太

2014/05　Research paper (international conference proceedings)

Peyer's patches play a protective role in nonsteroidal anti-inflammatory drug-induced enteropathy in mice

Satoshi Hiyama, Hideki Iijima, Shinichiro Shinzaki, Takahiro Inoue, Eri Shiraishi, Shoichiro Kawai, Manabu Araki, Motohiko Kato, Yoshito Hayashi, Tsutomu Nishida, Hironobu Fujii, Akira Mukai, Naoko Shibata, Shintaro Sato, Hiroshi Kiyono, Kazuyoshi Gotoh, Daisuke Motooka, Shota Nakamura, Tetsuya Iida, Masahiko Tsujii, Tetsuo Takehara

Inflammatory Bowel Diseases　Vol. 20　No. 5　p. 790-799　2014/05　Research paper (scientific journal)

Comprehensive metagenomic approach for detecting causative microorganisms in culture-negative infective endocarditis

Atsuko Imai, Kazuyoshi Gotoh, Yoshihiro Asano, Noriaki Yamada, Daisuke Motooka, Masaki Fukushima, Machiko Kanzaki, Tomohito Ohtani, Yasushi Sakata, Hiroyuki Nishi, Koichi Toda, Yoshiki Sawa, Issei Komuro, Toshihiro Horii, Tetsuya Iida, Shota Nakamura, Seiji Takashima

International Journal of Cardiology　Vol. 172　No. 2　p. E288-E289　2014/03/15　Research paper (scientific journal)

Characterization of human immunodeficiency virus type 1 CRF01_AE env genes derived from recently infected Thai individuals

Nithinart Chaitaveep, Piraporn Utachee, Shota Nakamura, Thippawan Chuenchitra, Pattama Ekpo, Naokazu Takeda, Kovit Pattanapanyasat, Masanori Kameoka

Microbes and Infection　Vol. 16　No. 2　p. 142-152　2014/02　Research paper (scientific journal)

Dynamics of Fecal Microbiota in Bangladeshi Children

Kazuyoshi Gotoh, Daisuke Motooka, Shota Nakamura, Shirajum Monira, Muniral Alam, Tetsuya Iida

2014/02　Research paper (international conference proceedings)

Mutation accumulation in bacteria exposed to UV radiation

Atsushi Shibai, Saburo Tsuru, Bei Wen Ying, Daisuke Motooka, Kazuyoshi Gotoh, Shota Nakamura, Tetsuya Yomo

Artificial Life 14 - Proceedings of the 14th International Conference on the Synthesis and Simulation of Living Systems, ALIFE 2014　p. 757-758　2014　Research paper (international conference proceedings)

Allergic bronchopulmonary mycosis due to co-infection with Aspergillus fumigatus and Schizophyllum commune

Masafumi Seki, Hideaki Ohno, Kazuyoshi Gotoh, Daisuke Motooka, Shota Nakamura, Tetsuya Iida, Yoshitsugu Miyazaki, Kazunori Tomono

IDCases　Vol. 1　No. 1　p. 5-8　2014　Research paper (scientific journal)

Structural basis for PPARγ transactivation by endocrine-disrupting organotin compounds

Shusaku Harada, Youhei Hiromori, Shota Nakamura, Kazuki Kawahara, Shunsuke Fukakusa, Takahiro Maruno, Masanori Noda, Susumu Uchiyama, Kiichi Fukui, Jun Ichi Nishikawa, Hisamitsu Nagase, Yuji Kobayashi, Takuya Yoshida, Tadayasu Ohkubo, Tsuyoshi Nakanishi

Scientific Reports　Vol. 5　2014　Research paper (scientific journal)

BEC, a novel enterotoxin of clostridium perfringens found in human clinical isolates from acute gastroenteritis outbreaks

Shinya Yonogi, Shigeaki Matsuda, Takao Kawai, Tomoko Yoda, Tetsuya Harada, Yuko Kumeda, Kazuyoshi Gotoh, Hirotaka Hiyoshi, Shota Nakamura, Toshio Kodama, Tetsuya Iida

Infection and Immunity　Vol. 82　No. 6　p. 2390-2399　2014　Research paper (scientific journal)

Reduced-dose telaprevir-based triple antiviral therapy for recurrent hepatitis C after living donor liver transplantation

Toru Ikegami, Tomoharu Yoshizumi, Masaki Kato, Satomi Yamamoto, Takasuke Fukuhara, Yoshiharu Matsuura, Shota Nakamura, Shinji Itoh, Ken Shirabe, Yoshihiko Maehara

Transplantation　Vol. 98　No. 9　p. 994-999　2014　Research paper (scientific journal)

Complete genome sequence of Ureaplasma parvum serovar 3 strain SV3F4, isolated in Japan

Heng Ning Wu, Yukiko Nakura, Daisuke Motooka, Shota Nakamura, Fumiko Nishiumi, Saki Ishino, Yasuhiro Kawai, Tatsuya Tanaka, Makoto Takeuchi, Masahiro Nakayama, Tomio Fujita, Itaru Yanagihara

Genome Announcements　Vol. 2　No. 3　2014　Research paper (scientific journal)

Generation of colonic IgA-secreting cells in the caecal patch

Kazunori Masahata, Eiji Umemoto, Hisako Kayama, Manato Kotani, Shota Nakamura, Takashi Kurakawa, Junichi Kikuta, Kazuyoshi Gotoh, Daisuke Motooka, Shintaro Sato, Tomonori Higuchi, Yoshihiro Baba, Tomohiro Kurosaki, Makoto Kinoshita, Yosuke Shimada, Taishi Kimura, Ryu Okumura, Akira Takeda, Masaru Tajima, Osamu Yoshie, Masahiro Fukuzawa, Hiroshi Kiyono, Sidonia Fagarasan, Tetsuya Iida, Masaru Ishii, Kiyoshi Takeda

Nature communications　Vol. 5　2014　Research paper (scientific journal)

Severe respiratory failure due to co-infection with human metapneumovirus and Streptococcus pneumoniae

Masafumi Seki, Hisao Yoshida, Kazuyoshi Gotoh, Nobuyuki Hamada, Daisuke Motooka, Shota Nakamura, Norihisa Yamamoto, Shigeto Hamaguchi, Yukihiro Akeda, Hiroshi Watanabe, Tetsuya Iida, Kazunori Tomono

Respiratory Medicine Case Reports　Vol. 12　p. 13-15　2014　Research paper (scientific journal)

Allergic bronchopulmonary mycosis due to co-infection with Aspergillus fumigatus and Schizophyllum commune

Masafumi Seki, Hideaki Ohno, Kazuyoshi Gotoh, Daisuke Motooka, Shota Nakamura, Tetsuya Iida, Yoshitsugu Miyazaki, Kazunori Tomono

IDCases　Vol. 1　No. 1　p. 5-8　2014　Research paper (scientific journal)

Physiologic and metagenomic attributes of the rhodoliths forming the largest CaCO<inf>3</inf> bed in the South Atlantic Ocean

Giselle S. Cavalcanti, Gustavo B. Gregoracci, Eidy O. Dos Santos, Cynthia B. Silveira, Pedro M. Meirelles, Leila Longo, Kazuyoshi Gotoh, Shota Nakamura, Tetsuya Iida, Tomoo Sawabe, Carlos E. Rezende, Ronaldo B. Francini-Filho, Rodrigo L. Moura, Gilberto M. Amado-Filho, Fabiano L. Thompson

ISME Journal　Vol. 8　No. 1　p. 52-62　2014/01　Research paper (scientific journal)

A Database for Rapid Detection of Pathogens in Infectious Diseases

Daisuke Motooka, Kazuyoshi Gotoh, Shota Nakamura, Toshihiro Horii

2014/01　Research paper (international conference proceedings)

Immunization of rabbits with synthetic peptides derived from a highly conserved β-sheet epitope region underneath the receptor binding site of influenza A virus

Shoji Ideno, Kaoru Sakai, Mikihiro Yunoki, Ritsuko Kubota-Koketsu, Yuji Inoue, Shota Nakamura, Teruo Yasunaga, Yoshinobu Okuno, Kazuyoshi Ikuta

Biologics: Targets and Therapy　Vol. 7　No. 1　p. 233-241　2013/11/05　Research paper (scientific journal)

GPAT2, a mitochondrial outer membrane protein, in piRNA biogenesis in germline stem cells

Yusuke Shiromoto, Satomi Kuramochi-Miyagawa, Akito Daiba, Shinichiro Chuma, Ami Katanaya, Akiko Katsumata, Ken Nishimura, Manami Ohtaka, Mahito Nakanishi, Toshinobu Nakamura, Koichi Yoshinaga, Noriko Asada, Shota Nakamura, Teruo Yasunaga, Kanako Kojima-Kita, Daisuke Itou, Tohru Kimura, Toru Nakano

RNA　Vol. 19　No. 6　p. 803-810　2013/06　Research paper (scientific journal)

Sequence-Specific and Visual Identification of the Influenza Virus NS Gene by Azobenzene-Tethered Bis-Peptide Nucleic Acid

Kunihiro Kaihatsu, Shinjiro Sawada, Shota Nakamura, Takaaki Nakaya, Teruo Yasunaga, Nobuo Kato

PLoS ONE　Vol. 8　No. 5　2013/05/21　Research paper (scientific journal)

Metagenomic Analysis of Healthy and White Plague-Affected Mussismilia braziliensis Corals

Gizele D. Garcia, Gustavo B. Gregoracci, Eidy de O. Santos, Pedro M. Meirelles, Genivaldo G.Z. Silva, Rob Edwards, Tomoo Sawabe, Kazuyoshi Gotoh, Shota Nakamura, Tetsuya Iida, Rodrigo L. de Moura, Fabiano L. Thompson

Microbial Ecology　Vol. 65　No. 4　p. 1076-1086　2013/05　Research paper (scientific journal)

Fatal sepsis caused by an unusual Klebsiella species that was misidentified by an automated identification system

Masafumi Seki, Kazuyoshi Gotoh, Shota Nakamura, Yukihiro Akeda, Tadashi Yoshii, Shinichi Miyaguchi, Hidenori Inohara, Toshihiro Horii, Kazunori Oishi, Tetsuya Iida, Kazunori Tomono

Journal of Medical Microbiology　Vol. 62　No. PART5　p. 801-803　2013/05　Research paper (scientific journal)

The lipid mediator protectin D1 inhibits influenza virus replication and improves severe influenza

Masayuki Morita, Keiji Kuba, Akihiko Ichikawa, Mizuho Nakayama, Jun Katahira, Ryo Iwamoto, Tokiko Watanebe, Saori Sakabe, Tomo Daidoji, Shota Nakamura, Ayumi Kadowaki, Takayo Ohto, Hiroki Nakanishi, Ryo Taguchi, Takaaki Nakaya, Makoto Murakami, Yoshihiro Yoneda, Hiroyuki Arai, Yoshihiro Kawaoka, Josef M. Penninger, Makoto Arita, Yumiko Imai

Cell　Vol. 153　No. 1　p. 112-125　2013/03/28　Research paper (scientific journal)

Metagenomic profile of gut microbiota in children during cholera and recovery

Shirajum Monira, Shota Nakamura, Kazuyoshi Gotoh, Kaori Izutsu, Haruo Watanabe, Nur Haque Alam, Takaaki Nakaya, Toshihiro Horii, Sk Imran Ali, Tetsuya Iida, Munirul Alam

Gut Pathogens　Vol. 5　No. 1　2013　Research paper (scientific journal)

Structure of the CFA/III major pilin subunit CofA from human enterotoxigenic Escherichia coli determined at 0.90 Å resolution by sulfur-SAD phasing

Shunsuke Fukakusa, Kazuki Kawahara, Shota Nakamura, Takaki Iwashita, Seiki Baba, Mitsuhiro Nishimura, Yuji Kobayashi, Takeshi Honda, Tetsuya Iida, Tooru Taniguchi, Tadayasu Ohkubo

Acta Crystallographica Section D: Biological Crystallography　Vol. 68　No. 10　p. 1418-1429　2012/10　Research paper (scientific journal)

Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade

Shin Ichiro Tachibana, Steven A. Sullivan, Satoru Kawai, Shota Nakamura, Hyunjae R. Kim, Naohisa Goto, Nobuko Arisue, Nirianne M.Q. Palacpac, Hajime Honma, Masanori Yagi, Takahiro Tougan, Yuko Katakai, Osamu Kaneko, Toshihiro Mita, Kiyoshi Kita, Yasuhiro Yasutomi, Patrick L. Sutton, Rimma Shakhbatyan, Toshihiro Horii, Teruo Yasunaga, John W. Barnwell, Ananias A. Escalante, Jane M. Carlton, Kazuyuki Tanabe

Nature Genetics　Vol. 44　No. 9　p. 1051-1055　2012/09　Research paper (scientific journal)

南極の氷中に含まれていた細菌叢の解析

大久保 寅彦, 佐藤 豊孝, 中村 昇太, 飯田 哲也, 臼井 優, 能田 淳, 萩原 克郎, 田村 豊

日本獣医学会学術集会講演要旨集　Vol. 154回　p. 229-229　2012/08

A comprehensive analysis of reassortment in influenza A virus

U. Chandimal De Silva, Hokuto Tanaka, Shota Nakamura, Naohisa Goto, Teruo Yasunaga

Biology Open　Vol. 1　No. 4　p. 385-390　2012/04　Research paper (scientific journal)

Frequency of D222G and Q223R hemagglutinin mutants of pandemic (H1N1) 2009 influenza virus in Japan between 2009 and 2010

Mayo Yasugi, Shota Nakamura, Tomo Daidoji, Norihito Kawashita, Ririn Ramadhany, Cheng Song Yang, Teruo Yasunaga, Tetsuya Iida, Toshihiro Horii, Kazuyoshi Ikuta, Kazuo Takahashi, Takaaki Nakaya

PLoS ONE　Vol. 7　No. 2　2012/02/17　Research paper (scientific journal)

Metagenomic analysis of DNA viruses in a wastewater treatment plant in tropical climate

Hideyuki Tamaki, Rui Zhang, Florent E. Angly, Shota Nakamura, Pei Ying Hong, Teruo Yasunaga, Yoichi Kamagata, Wen Tso Liu

Environmental Microbiology　Vol. 14　No. 2　p. 441-452　2012/02　Research paper (scientific journal)

Emergence of HA mutants during influenza virus pneumonia

Maria Eugenia Vázquez Manríquez, Akiko Makino, Motoko Tanaka, Yasuhisa Abe, Hiroyuki Yoshida, Ichiro Morioka, Soichi Arakawa, Yasuhiro Takeshima, Kentaro Iwata, Jin Takasaki, Toshie Manabe, Takaaki Nakaya, Shota Nakamura, Anjarath Lorena Higuera Iglesias, Rosa Maria Rivera Rossales, Erika Pena Mirabal, Tateki Ito, Toshio Kitazawa, Teruaki Oka, Makoto Yamashita, Koichiro Kudo, Kyoko Shinya

International Journal of Clinical and Experimental Pathology　Vol. 5　No. 8　p. 787-795　2012　Research paper (scientific journal)

Tropism of pandemic 2009 H1N1 influenza A virus

Ririn Ramadhany, Mayo Yasugi, Shota Nakamura, Tomo Daidoji, Yohei Watanabe, Kazuo Takahashi, Kazuyoshi Ikuta, Takaaki Nakaya

Frontiers in Microbiology　Vol. 3　No. APR　2012　Research paper (scientific journal)

The triple helical structure and stability of collagen model peptide with 4(S)-hydroxyprolyl-Pro-Gly units.

Daisuke Motooka, Kazuki Kawahara, Shota Nakamura, Masamitsu Doi, Yoshinori Nishi, Yuji Nishiuchi, Young Kee Kang, Takashi Nakazawa, Susumu Uchiyama, Takuya Yoshida, Tadayasu Ohkubo, Yuji Kobayashi

Biopolymers　Vol. 98　No. 2　p. 111-121　2012　Research paper (scientific journal)

Direct Metagenomic Detection of Viral Pathogens in Human Specimens Using an Unbiased High-Throughput Sequencing Approach

Takaaki Nakaya, Shota Nakamura, Yoshiko Okamoto, Yoshiyuki Nagai, Jun Kawai, Yoshihide Hayashizaki, Tetsuya Iida, Toshihiro Horii

Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats　p. 73-80　2011/11/10　Part of collection (book)

34 Structure-Function Study of Marinostatin, a Natural Ester-Linked Serine Protease Inhibitor(Oral Presentation)

Taichi Misako, Yamazaki Toshimasa, Kawahara Kazuki, Motooka Daisuke, Nakamura Shota, Teshima Tadashi, Ohkubo Tadayasu, Kobayashi Yuji, Nishiuchi Yuji

Symposium on the Chemistry of Natural Products, symposium papers　No. 53　p. 199-204　2011/09/02

Assembly states of the nucleosome assembly protein 1 (NAP-1) revealed by sedimentation velocity and non-denaturing MS

Masanori Noda, Susumu Uchiyama, Adam R. McKay, Akihiro Morimoto, Shigeki Misawa, Akihiro Yoshida, Hideto Shimahara, Hiroto Takinowaki, Shota Nakamura, Yuji Kobayashi, Sachihiro Matsunaga, Tadayasu Ohkubo, Carol V. Robinson, Kiichi Fukui

Biochemical Journal　Vol. 436　No. 1　p. 101-112　2011/05/15　Research paper (scientific journal)

Gut microbiota of healthy and malnourished children in Bangladesh

Shirajum Monira, Shota Nakamura, Kazuyoshi Gotoh, Kaori Izutsu, Haruo Watanabe, Nur Haque Alam, Hubert Ph Endtz, Alejandro Cravioto, Sk Imran Ali, Takaaki Nakaya, Toshihiro Horii, Tetsuya Iida, Munirul Alam

Frontiers in Microbiology　Vol. 2　No. NOV　2011　Research paper (scientific journal)

Genotypic profile of streptococcus suis serotype 2 and clinical features of infection in humans, Thailand

Anusak Kerdsin, Surang Dejsirilert, Parichart Puangpatra, Saowalak Sripakdee, Koranan Chumla, Nitsara Boonkerd, Pitimol Polwichai, Susumu Tanimura, Dan Takeuchi, Tatsuya Nakayama, Shota Nakamura, Yukihiro Akeda, Marcelo Gottschalk, Pathom Sawanpanyalert, Kazunori Oishi

Emerging Infectious Diseases　Vol. 17　No. 5　p. 835-842　2011　Research paper (scientific journal)

The role of lysine residue at amino acid position 165 of human immunodeficiency virus type 1 CRF01_AE Gag in reducing viral drug susceptibility to protease inhibitors

Masanori Kameoka, Panasda Isarangkura-na-ayuthaya, Yoko Kameoka, Sompong Sapsutthipas, Bongkot Soonthornsata, Shota Nakamura, Kenzo Tokunaga, Pathom Sawanpanyalert, Kazuyoshi Ikuta, Wattana Auwanit

Virology　Vol. 405　No. 1　p. 129-138　2010/09　Research paper (scientific journal)

Cloning, expression, crystallization and preliminary X-ray crystallographic analysis of a human condensin SMC2 hinge domain with short coiled coils

Kazuki Kawahara, Shota Nakamura, Yasuhiro Katsu, Daisuke Motooka, Yuki Hosokawa, Yukiko Kojima, Keiko Matsukawa, Hiroto Takinowaki, Susumu Uchiyama, Yuji Kobayashi, Kiichi Fukui, Tadayasu Ohkubo

Acta Crystallographica Section F: Structural Biology and Crystallization Communications　Vol. 66　No. 9　p. 1067-1070　2010/09　Research paper (scientific journal)

Characterization of HIV-1 resistance to a fusion inhibitor, N36, derived from the gp41 amino-terminal heptad repeat

Kazuki Izumi, Shota Nakamura, Hiroaki Nakano, Kazuya Shimura, Yasuko Sakagami, Shinya Oishi, Susumu Uchiyama, Tadayasu Ohkubo, Yuji Kobayashi, Nobutaka Fujii, Masao Matsuoka, Eiichi N. Kodama

Antiviral Research　Vol. 87　No. 2　p. 179-186　2010/08　Research paper (scientific journal)

Structure-activity relationship of marinostatin, a serine protease inhibitor isolated from a marine organism

Misako Taichi, Tohimasa Yamazaki, Kazuki Kawahara, Daisuke Motooka, Shota Nakamura, Shusaku Harada, Tadashi Teshima, Tadayasu Ohkubo, Yuji Kobayashi, Yuji Nishiuchi

Journal of Peptide Science　Vol. 16　No. 7　p. 329-336　2010/07　Research paper (scientific journal)

Two N-linked glycosylation sites in the V2 and C2 regions of human immunodeficiency virus type 1 CRF01-AE envelope glycoprotein gp120 regulate viral neutralization susceptibility to the human monoclonal antibody specific for the CD4 binding domain

Piraporn Utachee, Shota Nakamura, Panasda Isarangkura-na-ayuthaya, Kenzo Tokunaga, Pathom Sawanpanyalert, Kazuyoshi Ikuta, Wattana Auwanit, Masanori Kameoka

Journal of Virology　Vol. 84　No. 9　p. 4311-4320　2010/05　Research paper (scientific journal)

Structure and reaction mechanism of human nicotinamide phosphoribosyltransferase

Ryo Takahashi, Shota Nakamura, Takashi Nakazawa, Katsuhiko Minoura, Takuya Yoshida, Yoshinori Nishi, Yuji Kobayashi, Tadayasu Ohkubo

Journal of Biochemistry　Vol. 147　No. 1　p. 95-107　2010/01　Research paper (scientific journal)

Clonal dissemination of human isolates of Streptococcus suis serotype 14 in Thailand

Anusak Kerdsin, Kazunori Oishi, Saowalak Sripakdee, Nitsara Boonkerd, Pitimol Polwichai, Shota Nakamura, Ryuichi Uchida, Pathom Sawanpanyalert, Surang Dejsirilert

Journal of Medical Microbiology　Vol. 58　No. 11　p. 1508-1513　2009/11　Research paper (scientific journal)

Electrostatically constrained α-helical peptide inhibits replication of HIV-1 resistant to enfuvirtide

Hiroki Nishikawa, Shota Nakamura, Eiichi Kodama, Saori Ito, Keiko Kajiwara, Kazuki Izumi, Yasuko Sakagami, Shinya Oishi, Tadayasu Ohkubo, Yuji Kobayashi, Akira Otaka, Nobutaka Fujii, Masao Matsuoka

International Journal of Biochemistry and Cell Biology　Vol. 41　No. 4　p. 891-899　2009/04　Research paper (scientific journal)

Phenotypic studies on recombinant human immunodeficiency virus type 1 (HIV-1) containing CRF01_AE env gene derived from HIV-1-infected patient, residing in central Thailand

Piraporn Utachee, Piyamat Jinnopat, Panasda Isarangkura-na-ayuthaya, U. Chandimal de Silva, Shota Nakamura, Uamporn Siripanyaphinyo, Nuanjun Wichukchinda, Kenzo Tokunaga, Teruo Yasunaga, Pathom Sawanpanyalert, Kazuyoshi Ikuta, Wattana Auwanit, Masanori Kameoka

Microbes and Infection　Vol. 11　No. 3　p. 334-343　2009/03　Research paper (scientific journal)

Genotypic characterization of CRF01-AE env genes derived from human immunodeficiency virus type 1-infected patients residing in central Thailand

Piraporn Utachee, Piyamat Jinnopat, Panasda Isarangkura-Na-Ayuthaya, Udayanga Chandimal De Silva, Shota Nakamura, Uamporn Siripanyaphinyo, Nuanjun Wichukchinda, Kenzo Tokunaga, Teruo Yasunaga, Pathom Sawanpanyalert, Kazuyoshi Ikuta, Wattana Auwanit, Masanori Kameoka

AIDS Research and Human Retroviruses　Vol. 25　No. 2　p. 229-236　2009/02/01　Research paper (scientific journal)

Detection of circulating Asian H5N1 viruses by a newly established monoclonal antibody

Anariwa Du, Tomo Daidoji, Takaaki Koma, Madiha S. Ibrahim, Shota Nakamura, U. Chandimal de Silva, Mayo Ueda, Cheng Song Yang, Teruo Yasunaga, Kazuyoshi Ikuta, Takaaki Nakaya

Biochemical and Biophysical Research Communications　Vol. 378　No. 2　p. 197-202　2009/01/09　Research paper (scientific journal)

Inhibition of influenza virus infection by targeting genome conserved region with non-natural nucleic acid.

Tomoya Takahashi, Takuya Ohzawa, Shinjiro Sawada, Nobuo Kato, Naohisa Goto, Shota Nakamura, Teruo Yasunaga, Kunihiro Kaihatsu

Nucleic acids symposium series (2004)　No. 53　p. 285-286　2009　Research paper (scientific journal)

Stability enhancement of cytochrome c through heme deprotonation and mutations

Takafumi Sonoyama, Jun Hasegawa, Susumu Uchiyama, Shota Nakamura, Yuji Kobayashi, Yoshihiro Sambongi

Biophysical Chemistry　Vol. 139　No. 1　p. 37-41　2009/01　Research paper (scientific journal)

Hyperstability and crystal structure of cytochrome c<inf>555</inf> from hyperthermophilic Aquifex aeolicus

Marii Obuchi, Kazuki Kawahara, Daisuke Motooka, Shota Nakamura, Masaru Yamanaka, Taku Takeda, Susumu Uchiyama, Yuji Kobayashi, Tadayasu Ohkubo, Yoshihiro Sambongi

Acta Crystallographica Section D: Biological Crystallography　Vol. 65　No. 8　p. 804-813　2009　Research paper (scientific journal)

Metagenomic diagnosis of bacterial infections

Shota Nakamura, Norihiro Maeda, Ionut Mihai Miron, Myonsun Yoh, Kaori Izutsu, Chidoh Kataoka, Takeshi Honda, Teruo Yasunaga, Takaaki Nakaya, Jun Kawai, Yoshihide Hayashizaki, Toshihiro Horii, Tetsuya Iida

Emerging Infectious Diseases　Vol. 14　No. 11　p. 1784-1786　2008/11　Research paper (scientific journal)

Synthesis and characterization of the collagen model peptides containing 4(S)-hydroxyproline

Daisuke Motooka, Kazuki Kawahara, Shota Nakamura, Susumu Uchiyama, Masamitsu Doi, Yuji Nishiuchi, Takashi Nakazawa, Tadayasu Ohkubo, Yoshinori Nishi, Yuji Kobayashi

JOURNAL OF PEPTIDE SCIENCE　Vol. 14　No. 8　p. 172-172　2008/08

Reduced incorporation of SARS-CoV spike protein into viral particles due to amino acid substitutions within the receptor binding domain

Shu Ming Li, Gui Mei Li, Shota Nakamura, Kazuyoshi Ikuta, Takaaki Nakaya

Japanese Journal of Infectious Diseases　Vol. 61　No. 2　p. 123-127　2008　Research paper (scientific journal)

Stabilization mechanism of cytochrome c<inf>552</inf> from a moderately thermophilic bacterium, Hydrogenophilus thermoluteolus

Sayaka Hakamada, Takafumi Sonoyama, Shin Ichi Ichiki, Shota Nakamura, Susumu Uchiyama, Yuji Kobayashi, Yoshihiro Sambongi

Bioscience, Biotechnology and Biochemistry　Vol. 72　No. 8　p. 2103-2109　2008　Research paper (scientific journal)

Roles of a short connecting disulfide bond in the stability and function of psychrophilic Shewanella violacea cytochrome c<inf>5</inf>

Keiko Ogawa, Takafumi Sonoyama, Taku Takeda, Shin Ichi Ichiki, Shota Nakamura, Yuji Kobayashi, Susumu Uchiyama, Kaoru Nakasone, Shin Ichi J. Takayama, Hajime Mita, Yasuhiko Yamamoto, Yoshihiro Sambongi

Extremophiles　Vol. 11　No. 6　p. 797-807　2007/11　Research paper (scientific journal)

Crystal structure of Pyrococcus horikoshii PPC protein at 1.60 Å resolution

Linyen Lin, Hiroaki Nakano, Shota Nakamura, Susumu Uchiyama, Satora Fujimoto, Sachihiro Matsunaga, Yuji Kobayashi, Tadayasu Ohkubo, Kiichi Fukui

Proteins: Structure, Function and Genetics　Vol. 67　No. 2　p. 505-507　2007/05/01　Research paper (scientific journal)

Crystallization of human nicotinamide phosphoribosyltransferase

Ryo Takahashi, Shota Nakamura, Takuya Yoshida, Yuji Kobayashi, Tadayasu Ohkubo

Acta Crystallographica Section F: Structural Biology and Crystallization Communications　Vol. 63　No. 5　p. 375-377　2007/04　Research paper (scientific journal)

1P006 Molecular dynamics simulation of 3α-hydroxysteroid dehydrogenase with NADH : Structural changes in the substrate-binding loop(Proteins-structure and structure-function relationship,Oral Presentations)

Nakamura Shota, Oroguchi Tomotaka, Yamane Tsutomu, Ikeguchi Mitsunori, Kataoka Sachiyo, Koga Maiko, Oda Masayuki, Kobayashi Yuji, Ohkubo Tadayasu

Seibutsu Butsuri　Vol. 47　2007

Apo- and holo-structures of 3α-hydroxysteroid dehydrogenase from Pseudomonas sp. B-0831: Loop-helix transition induced by coenzyme binding

Shota Nakamura, Masayuki Oda, Sachiyo Kataoka, Shigeru Ueda, Susumu Uchiyama, Takuya Yoshida, Yuji Kobayashi, Tadayasu Ohkubo

Journal of Biological Chemistry　Vol. 281　No. 42　p. 31876-31884　2006/10/20　Research paper (scientific journal)

Crystallization and preliminary X-ray analysis of the complex of NADH and 3α-hydroxysteroid dehydrogenase from Pseudomonas sp. B-0831

Sachiyo Kataoka, Shota Nakamura, Tadayasu Ohkubo, Shigeru Ueda, Susumu Uchiyama, Yuji Kobayashi, Masayuki Oda

Acta Crystallographica Section F: Structural Biology and Crystallization Communications　Vol. 62　No. 6　p. 569-571　2006/06　Research paper (scientific journal)

Structure of cytochrome c552 from a moderate thermophilic bacterium, Hydrogenophilus thermoluteolus: comparative study on the thermostability of cytochrome c

Shota Nakamura, Shin Ichi Ichiki, Hiroyuki Takashima, Susumu Uchiyama, Jun Hasegawa, Yuji Kobayashi, Yoshihiro Sambongi, Tadayasu Ohkubo

Biochemistry　Vol. 45　No. 19　p. 6115-6123　2006/05/16　Research paper (scientific journal)

Effect of hydration on the thermal stability of the collagen model peptide containing 4(S)-hydroxyproline

Yoshinri Nishi, other people

Peptide Science 2006　Vol. 2006　p. 169-170　2006　Research paper (scientific journal)

2P084 Crystallographic Analysis of Collagen-Like Triple Helical Structure of (4(R)-Hyp-4(R)-Hyp-Gly)_<10>

Kawahara K., Nishi Y., Nakamura S., Uchiyama S., Nishiuchi Y., Nakazawa T., Ohkubo T., Kobayashi Y.

Seibutsu Butsuri　Vol. 45　2005

1P066 Hydration effects on the thermal stability of collagen model peptide, (4(R)-hydroxyprolyl-4(R)-hydroxyprolyl-Gly)_<10>

Nishi Y., Kawahara K., Nakamura S., Uchiyama S., Nishiuchi Y., Nakazawa T., Ohkubo T., Kobayashi Y.

Seibutsu Butsuri　Vol. 45　2005

Redox Function and Thermostability of Various P. aeruginosa Cytochrome c551 Mutants（共著）

山本,泰彦, K.,Oikawa, S.,Nakamura, S.,Sonoyama, A.,Oshima, Y.,Kobayashi, S.,J. Takayama, S.,Uchiyama, J.,Hasegawa, Y.,Sambongi

Journal of Bioinorganic Chemistry　Vol. 96　p. 5527-5532　2005/01　Research paper (scientific journal)

Complete thermal-unfolding profiles of oxidized and reduced cytochromes c

Susumu Uchiyama, Atsushi Ohshima, Shota Nakamura, Jun Hasegawa, Norifumi Terui, Shin Ichi Joseph Takayama, Yasuhiko Yamamoto, Yoshihiro Sambongi, Yuji Kobayashi

Journal of the American Chemical Society　Vol. 126　No. 45　p. 14684-14685　2004/11/17　Research paper (scientific journal)

3P014 Mechanism for protein stabilization in Pseudomonas aeruginosa cytochrome c551 and its variants

Sonoyama T., Uchiyama S., Nakamura S., Oshima A., Kobayashi Y., Sambongi Y.

Seibutsu Butsuri　Vol. 44　2004

3P012 Stability of cytochrome c-552 from a moderate thermophilic bacterium, Hydrogenophilus thermoluteolus

Ichiki S., Nakamura S., Ohshima A., Kobayashi Y., Hasegawa J., Uchiyama S., Nishihara H., Mizuta K., Sanbongi Y.

Seibutsu Butsuri　Vol. 44　2004

3P011 Expression of thermophilc hydrogen-oxidizing bacterium Hydrogenobactor thermophilus cytochrome c552 in Escherichia coli and its stability

Oikawa K., Nakamura S., Takayama S., Hasegawa J., Kobayashi Y., Yamamoto Y., Uchiyama S., Sambongi Y.

Seibutsu Butsuri　Vol. 44　2004

Sequence of the gene for Clostridium botulinum type B neurotoxin associated with infant botulism, expression of the C-terminal half of heavy chain and its binding activity.

Ihara H, Kohda T, Morimoto F, Tsukamoto K, Karasawa T, Nakamura S, Mukamoto M, Kozaki S

Biochimica et biophysica acta　Vol. 1625　No. 1　p. 19-26　2003/01

Deep learning approach for pathogen detection through shotgun metagenomics sequence classification

Ying Feng Hsu, Makiko Ito, Takumi Maruyama, Morito Matsuoka, Nicolas Jung, Yuki Matsumoto, Daisuke Motooka, Shota Nakamura

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)　Vol. 11526 LNAI　p. 24-30　1905/07/11　Research paper (international conference proceedings)