Comparison of fluorescence intensity of protoporphyrin IX as observed on the screen of different cystoscopic systems

Hideo Fukuhara, Takahiro Nishimura, Yu Shimojo, Keiji Inoue

Photodiagnosis and Photodynamic Therapy　Vol. 51　p. 104425-104425　2025/02　Research paper (scientific journal)

Measurement of tissue optical properties in the 400 to 700 nm range to assess light penetration depths for laser treatment of upper tract urothelial carcinomas

Himemi Watabe, Yu Shimojo, Asako Shingu, Hidenori Ito, Hideo Fukuhara, Makito Miyake, Keiji Inoue, Kiyohide Fujimoto, Takahiro Nishimura

Journal of Biomedical Optics　Vol. 29　No. 12　2024/12/10　Research paper (scientific journal)

In Silico Evaluation of Nanosecond Laser Treatment of Pigmented Lesions Based on Skin Optical Properties Using a Model of Melanosome Disruption Threshold Fluence

Yu Shimojo, Takahiro Nishimura, Daisuke Tsuruta, Toshiyuki Ozawa, Taro Kono

Lasers in Surgery and Medicine　Vol. 57　No. 1　p. 130-140　2024/09/29　Research paper (scientific journal)

Ultralow radiant exposure of a short-pulsed laser to disrupt melanosomes with localized thermal damage through a turbid medium

Yu Shimojo, Takahiro Nishimura, Daisuke Tsuruta, Toshiyuki Ozawa

Scientific Reports　Vol. 14　No. 1　2024/08/29　Research paper (scientific journal)

Demonstration of quantum dot reservoir computing based on spatio-temporal optical processing

Naoya Tate, Seiya Yamaguchi, Shunichi Sakai, Suguru Shimomura, Takahiro Nishimura, Jun Kozuka, Yusuke Ogura, Jun Tanida

Applied Optics　Vol. 63　No. 28　p. G30-G30　2024/05/30　Research paper (scientific journal)

Wavelength‐dependent threshold fluences for melanosome disruption to evaluate the treatment of pigmented lesions with 532‐, 730‐, 755‐, 785‐, and 1064‐nm picosecond lasers

Yu Shimojo, Takahiro Nishimura, Daisuke Tsuruta, Toshiyuki Ozawa, Henry Hin Lee Chan, Taro Kono

Lasers in Surgery and Medicine　2024/03/04　Research paper (scientific journal)

有機発光ダイオードを用いた細菌に対する光線力学治療

Yu Shimojo, Rie Teranishi, Takahiro Nishimura, Kenji Kuwada, Tsuyoshi Goya, Katsuyuki Morii, Daisuke Tsuruta, Toshiyuki Ozawa

The Journal of Japan Society for Laser Surgery and Medicine　2024　Research paper (scientific journal)

Deep learning based depth map estimation of protoporphyrin IX in turbid media using dual wavelength excitation fluorescence

Hinano Imanishi, Takahiro Nishimura, Yu Shimojo, Kunio Awazu

Biomedical Optics Express　Vol. 14　No. 10　p. 5254-5254　2023/09/18　Research paper (scientific journal)

Transient simulation of laser ablation based on Monte Carlo light transport with dynamic optical properties model

Yu Shimojo, Kazuma Sudo, Takahiro Nishimura, Toshiyuki Ozawa, Daisuke Tsuruta, Kunio Awazu

Scientific Reports　Vol. 13　No. 1　2023/07/24　Research paper (scientific journal)

Artificial neural network-based determination of denoised optical properties in double integrating spheres measurement

Yusaku Takai, Takahiro Nishimura, Yu Shimojo, Kunio Awazu

Journal of Innovative Optical Health Sciences　2023/06/14　Research paper (scientific journal)

Increased fluorescence observation intensity during the photodynamic diagnosis of deeply located tumors by fluorescence photoswitching of protoporphyrin IX

Sochi J. Ogbonna, William Y. York, Takahiro Nishimura, Hisanao Hazama, Hideo Fukuhara, Keiji Inoue, Kunio Awazu

Journal of Biomedical Optics　Vol. 28　No. 05　2023/05/15　Research paper (scientific journal)

Quantitative evaluation of light distribution in skin tissue for short-pulsed laser treatment using Monte Carlo simulation combined with nonlinear absorption model of melanin

Yu Shimojo, Takahiro Nishimura, Kunio Awazu

Optical Interactions with Tissue and Cells XXXIV　2023/03/07　Research paper (international conference proceedings)

Endoscopic image-guided laser treatment system based on fiber bundle laser steering

Yuto Miyoshi, Takahiro Nishimura, Yu Shimojo, Keita Okayama, Kunio Awazu

Scientific Reports　Vol. 13　No. 1　2023/02/28　Research paper (scientific journal)

Nonlinear absorption‐based analysis of energy deposition in melanosomes for 532‐nm short‐pulsed laser skin treatment

Yu Shimojo, Takahiro Nishimura, Toshiyuki Ozawa, Daisuke Tsuruta, Kunio Awazu

Lasers in Surgery and Medicine　Vol. 55　No. 3　p. 305-315　2023/02/14　Research paper (scientific journal)

Mathematical modelling for antimicrobial photodynamic therapy mediated by 5-aminolaevulinic acid: An in vitro study

Takahiro Nishimura, Takuro Suzuki, Yu Shimojo, Rie Teranishi, Toshiyuki Ozawa, Daisuke Tsuruta, Kunio Awazu

Photodiagnosis and Photodynamic Therapy　Vol. 40　p. 103116-103116　2022/12　Research paper (scientific journal)

Depth estimation of protoporphyrin IX objects in turbid media considering the fluorescence intensity ratio between two wavelengths of light for application in invasion diagnosis of gastric cancer

Hinano Imanishi, Takahiro Nishimura, Kunio Awazu

Optical Review　Vol. 29　No. 4　p. 310-319　2022/08　Research paper (scientific journal)

<i>In Silico</i> Evaluation of Light Irradiation in Photodynamic Therapy for Peripheral Lung Cancer

Takahiro Nishimura, Kenta Mori, Kazuma Sudo, Kunio Awazu

The Journal of Japan Society for Laser Surgery and Medicine　Vol. 43　No. 1　p. 13-21　2022/04/15　Research paper (scientific journal)

Quantitative analysis of nonlinear optical input/output of a quantum-dot network based on the echo state property

Naoya Tate, Yuki Miyata, Shun-ichi Sakai, Akihiro Nakamura, Suguru Shimomura, Takahiro Nishimura, Jun Kozuka, Yusuke Ogura, Jun Tanida

OPTICS EXPRESS　Vol. 30　No. 9　p. 14669-14676　2022/04　Research paper (scientific journal)

Three-dimensional transient simulation of CO₂ laser tissue vaporization and experimental evaluation with a hydrogel phantom

Kazuma Sudo, Yu Shimojo, Takahiro Nishimura, Kunio Awazu

Journal of Innovative Optical Health Sciences　2022/03/26　Research paper (scientific journal)

Two-level model of melanin absorption in picosecond laser skin treatment

Yu Shimojo, Takahiro Nishimura, Kunio Awazu

Optical Interactions with Tissue and Cells XXXIII; and Advanced Photonics in Urology　2022/03/02　Research paper (international conference proceedings)

Photothermal Effect Induced by Contact Laser Vaporization of Porcine Prostate Tissues Using XCAVATOR Fiber

Yu Shimojo, Takahiro Nishimura, Kunio Awazu

The Journal of Japan Society for Laser Surgery and Medicine　Vol. 42　No. 4　p. 219-227　2022/01/15　Research paper (scientific journal)

Comparative Evaluation of Photodynamic Therapeutic Probes for Peripheral Lung Cancer Based on Light Propagation Simulation

Yutaka Tomioka, Kenta Mori, Takahiro Nishimura, Jitsuo Usuda, Kunio Awazu

Nippon Laser Igakkaishi　Vol. 42　No. 2　p. 37-43　2021/07/15　Research paper (scientific journal)

Experimental analysis of morphological change in melanin for multiscale modeling of picosecond laser skin treatment

Yu Shimojo, Takahiro Nishimura, Hisanao Hazama, Kunio Awazu

Progress in Biomedical Optics and Imaging - Proceedings of SPIE　Vol. 11640　2021/03　Research paper (international conference proceedings)

Determination of optical properties in double integrating sphere measurement by artificial neural network based method

Takahiro Nishimura, Yusaku Takai, Yu Shimojo, Hisanao Hazama, Kunio Awazu

Optical Review　Vol. 28　No. 1　p. 42-47　2021/02/01　Research paper (scientific journal)

Spatiotemporal model for FRET networks with multiple donors and acceptors: multicomponent exponential decay derived from the master equation

Masaki Nakagawa, Yuki Miyata, Naoya Tate, Takahiro Nishimura, Suguru Shimomura, Sho Shirasaka, Jun Tanida, Hideyuki Suzuki

Journal of the Optical Society of America B　Vol. 38　No. 2　p. 294-294　2021/02/01　Research paper (scientific journal)

Erratum: Measurement of absorption and reduced scattering coefficients in Asian human epidermis, dermis, and subcutaneous fat tissues in the 400-to 1100-nm wavelength range for optical penetration depth and energy deposition analysis (Journal of Biomedical Optics (2020) 25:4 (045002) DOI: 10.1117/1.JBO.25.4.045002)

Yu Shimojo, Takahiro Nishimura, Hisanao Hazama, Toshiyuki Ozawa, Kunio Awazu

Journal of Biomedical Optics　Vol. 26　No. 1　2021/01/31　Research paper (scientific journal)

Development of fluorescence cystoscope system for extension of diagnosis depth in 5-aminolevulinic acid mediated photodynamic diagnosis of bladder cancer

Hiroki Takishima, Takahiro Nishimura, Hisanao Hazama, Hideo Fukuhara, Keiji Inoue, Kunio Awazu

Optics InfoBase Conference Papers　2021　Research paper (international conference proceedings)

Verification of Spatiotemporal Optical Properties of Quantum Dot Network by Regioselective Photon counting

Shunichi Sakai, Akihiro Nakamura, Suguru Shimomura, Takahiro Nishimura, Jun Kozuka, Naoya Tate, Yusuke Ogura, Jun Tanida

Photonics in Switching and Computing 2021　2021　Research paper (international conference proceedings)

Incident Fluence Analysis for 755-nm Picosecond Laser Treatment of Pigmented Skin Lesions Based on Threshold Fluences for Melanosome Disruption

Yu Shimojo, Takahiro Nishimura, Hisanao Hazama, Nobuhisa Ito, Kunio Awazu

Lasers in Surgery and Medicine　Vol. 53　No. 8　p. 1096-1104　2021　Research paper (scientific journal)

Spatiotemporal model for FRET networks with multiple donors and acceptors: multicomponent exponential decay derived from the master equation

Masaki Nakagawa, Yuki Miyata, Naoya Tate, Takahiro Nishimura, Suguru Shimomura, Sho Shirasaka, Jun Tanida, Hideyuki Suzuki

Journal of the Optical Society of America B　Vol. 38　No. 2　p. 294-299　2021/01　Research paper (scientific journal)

Determination of optical properties in double integrated sphere measurement by artificial neural network based method

Takahiro Nishimura, Yusaku Takai, Yu Shimojo, Hisanao Hazama, Kunio Awazu

Optical Review　Vol. 28　p. 42-47　2021/01　Research paper (scientific journal)

Investigation of the Excitation Wavelength for Extension of Diagnostic Depth in 5-aminolevulinic Acid-based Photodynamic Diagnosis of Bladder Cancer

Hiroki Takishima, Daisuke Ihara, Takahiro Nishimura, Hisanao Hazama, Kunio Awazu

Nippon Laser Igakkaishi　Vol. 41　No. 4　p. 297-306　2021/01　Research paper (scientific journal)

An irradiation planning method based on a singlet oxygen model for interstitial photodynamic therapy

Takahiro Nishimura, Kunio Awazu

Photodynamic Therapy & Photodiagnosis Update 2020　2020/11　Research paper (international conference proceedings)

Determination and analysis of singlet oxygen quantum yields of talaporfin sodium, protoporphyrin IX, and lipidated protoporphyrin IX using near-infrared luminescence spectroscopy.

Takahiro Nishimura, Keisuke Hara, Norihiro Honda, Shigetoshi Okazaki, Hisanao Hazama, Kunio Awazu

Lasers in medical science　Vol. 35　No. 6　p. 1289-1297　2020/08　Research paper (scientific journal)

Picosecond laser-induced photothermal skin damage evaluation by computational clinical trial

Yu Shimojo, T. Nishimura, H. Hazama, N. Ito, K. Awazu

Laser Therapy　Vol. 29　No. 1　p. 61-72　2020/07　Research paper (scientific journal)

Improvement of signal-to-noise ratio in super resolution imaging using subdiffraction limited spots by additional digital signal processing

Riki Yamada, Yusuke Ogura, Takahiro Nishimura, Yosuke Tamada, Takashi Murata, Jun Tanida

Biomedical Imaging and Sensing Conference 2020　2020/06　Research paper (international conference proceedings)

Computational evaluation of ethnic differences in photothermal damage induced by laser skin treatments

Yu Shimojo, Takahiro Nishimura, Hisanao Hazama, Toshiyuki Ozawa, Kunio Awazu

Optics InfoBase Conference Papers　Vol. Part F178-Translational-2020　2020/04　Research paper (international conference proceedings)

Computer-aided Regulatory Science for Laser Medicine

Takahiro Nishimura, Yu Shimojo, Kunio Awazu

Journal of Japan Society for Laser Surgery and Medicine　Vol. 41　No. 1　p. 37-43　2020/04　Research paper (scientific journal)

Measurement of absorption and reduced scattering coefficients in Asian human epidermis, dermis, and subcutaneous fat tissues in the 400- To 1100-nm wavelength range for optical penetration depth and energy deposition analysis

Yu Shimojo, Takahiro Nishimura, Hisanao Hazama, Toshiyuki Ozawa, Kunio Awazu

Journal of Biomedical Optics　Vol. 25　No. 4　2020/04　Research paper (scientific journal)

Spectral and temporal optical signal generation using randomly distributed quantum dots

Suguru Shimomura, Takahiro Nishimura, Yuki Miyata, Naoya Tate, Yusuke Ogura, Jun Tanida

OPTICAL REVIEW　Vol. 27　No. 2　p. 264-269　2020/03　Research paper (scientific journal)

Fluorescence detection of deep intramucosal cancer excited by green light for photodynamic diagnosis using protoporphyrin IX induced by 5-aminolevulinic acid: an ex vivo study.

Daisuke Ihara, Hisanao Hazama, Takahiro Nishimura, Yoshinori Morita, Kunio Awazu

Journal of biomedical optics　Vol. 25　No. 6　p. 063809-13　2020/03　Research paper (scientific journal)

Nanoscale Optical Logic Circuits by Single-Step FRET

Jinya Inoue, Takahiro Nishimura, Yusuke Ogura, Jun Tanida

IEEE Photonics Journal　2020/02　Research paper (scientific journal)

Photodynamic diagnosis with 5-aminolevulinic acid for intramucosal gastric cancer using green light

Daisuke Ihara, Hisanao Hazama, Takahiro Nishimura, Kunio Awazu

Progress in Biomedical Optics and Imaging - Proceedings of SPIE　Vol. 11220　2020/01　Research paper (international conference proceedings)

Histological Changes of Feline Mammary Carcinoma Treated by NPe6 HVJ-E PDT

山下真路, 大崎智弘, 寸田祐嗣, 斎藤祥子, 稲井瑞穂, 本多典広, 本多典広, 西村隆宏, 間久直, 粟津邦男, 粟津邦男, 粟津邦男, 金田安史, 岡本芳晴

日本レーザー医学会誌　Vol. 40　No. 4　p. 403-407　2020/01　Research paper (scientific journal)

熱損傷シミュレーションに基づく皮膚良性色素疾患治療用ナノ秒パルスレーザー装置の計算機臨床試験方法

西村 隆宏, 下条 裕, 間 久直, 粟津 邦男

日本レーザー医学会誌　Vol. 40　No. 4　p. 301-308　2020/01　Research paper (scientific journal)

Enhancement of the safety and efficacy of colorectal endoscopic submucosal dissection using a CO2 laser

Takuma Noguchi, Hisanao Hazama, Takahiro Nishimura, Yoshinori Morita, Kunio Awazu

LASERS IN MEDICAL SCIENCE　Vol. 35　No. 2　p. 421-427　2020/01　Research paper (scientific journal)

Object movement change in optical decomposition of DNA gels

Suguru Shimomura, Takahiro Nishimura Yusuke Ogura, Jun Tanida

2019/12　Research paper (international conference proceedings)

Optical decomposition of DNA gel and modification of object mobility on micrometre scale

Suguru Shimomura, Takahiro Nishimura, Yusuke Ogura, Jun Tanida

SCIENTIFIC REPORTS　Vol. 9　2019/12　Research paper (scientific journal)

Singlet oxygen model evaluation of interstitial photodynamic therapy with 5-aminolevulinic acid for malignant brain tumor.

Atsuki Izumoto, Takahiro Nishimura, Hisanao Hazama, Naokado Ikeda, Yoshinaga Kajimoto, Kunio Awazu

Journal of biomedical optics　Vol. 25　No. 6　p. 063803-1-063803-13　2019/12　Research paper (scientific journal)

Superresolution bioimaging by subdiffraction-limit pattern illumination

Yusuke Ogura, Riki Yamada, Takahiro Nishimura, Yosuke Tamada, Takashi Murata, Jun Tanida

p. Inv18m-2-62　2019/12　Research paper (international conference proceedings)

Computational evaluation of the effect of interstitial PDT with 5-ALA for pretreatment planning

Takahiro Nishimura, Atsuki Izumoto, Hisanao Hazama, Kunio Awazu

2019/08　Research paper (other academic)

A quantum dot reservoir based on Förster resonance energy transfer for optical reservoir computing

Jun Tanida, Suguru Shimomura, Takahiro Nishimura, Yuki Miyata, Naoya Tate, Yusuke Ogura

2019/08　Research paper (other academic)

Integration of DNA and Photonics for Computing, Sensing, and Fabrication

Yusuke Ogura, Jinya Inoue, Suguru Shimomura, Takahiro Nishimura, Jun Tanida

2019/06　Research paper (international conference proceedings)

In silico evaluation of thermal skin damage caused by picosecond laser irradiation

Yu Shimojo, Takahiro Nishimura, Hisanao Hazama, Nobuhiro Ito, Kunio Awazu

Bio-Optics: Design and Application - Proceedings Biophotonics Congress: Optics in the Life Sciences Congress 2019 (BODA, BRAIN, NTM, OMA, OMP)　2019/04　Research paper (international conference proceedings)

Reversible transformation of DNA gels using light signals

Suguru Shimomura, Takahiro Nishimura, Yusuke Ogura, Jun Tanida

Proceedings of SPIE - The International Society for Optical Engineering　Vol. 11140　2019/04　Research paper (international conference proceedings)

Subdiffraction-limit optical-pattern generation and its application to super-resolution imaging

Yusuke Ogura, Daiki Shinkawa, Takahiro Nishimura, Yosuke Tamada, Jun Tanida

2019/04　Research paper (international conference proceedings)

Energy transfer in quantum-dot network for optical reservoir computing

Suguru Shimomura, Takahiro Nishimura, Yuki Miyata, Naoya Tate, Yusuke Ogura, Jun Tanida

2019/04　Research paper (international conference proceedings)

Fluorescence imaging of photosensitizers in biological tissues for photodynamic diagnosis during interstitial photodynamic therapy

Takahiro Nishimura, Kunio Awazu

OPTICAL METHODS FOR TUMOR TREATMENT AND DETECTION: MECHANISMS AND TECHNIQUES IN PHOTODYNAMIC THERAPY XXVIII　Vol. 10860　2019/02　Research paper (international conference proceedings)

Patterning of DNA hydrogels by photodecomposition with visible light

Suguru Shimomura, Takahiro Nishimura, Yusuke Ogura, Jun Tanida

2019/02　Research paper (international conference proceedings)

Computational simulation of the effect of interstitial Photodynamic therapy for pretreatment planning

Takahiro Nishimura, Atsuki Izumoto, Hisanao Hazama, Kunio Awazu

2018/12　Research paper (international conference proceedings)

Nanoscale optical logic circuits based on FRET switches

Jinya Inoue, Takahiro Nishimura, Yusuke Ogura, Jun Tanida

2018/12　Research paper (international conference proceedings)

Laser scanning microscopy with subdiffraction-limit pattern

Yusuke Ogura, Daiki Shinkawa, Takahiro Nishimura, Yosuke Tamada, Jun Tanida

2018/12　Research paper (international conference proceedings)

In silico simulation of 5-ALA-based interstitial PDT

Takahiro Nishimura, Atsuki Izumoto, Hisanao Hazama, Kunio Awazu

2018/10　Research paper (international conference proceedings)

Motion control of micrometer-sized object by photodecompotision of DNA hydrogels

Suguru Shimomura, Takahiro Nishimura, Yusuke Ogura, Jun Tanida

2018/10　Research paper (international conference proceedings)

In silico evaluation of interstitial photodynamic therapy. Photodynamic Therapy and Photodiagnosis

Takahiro Nishimura, Atsuki Izumoto, Hisanao Hazama, Naokado Ikeda, Yoshinaga Kajimoto, Toshihiko Kuroiwa, Kunio Awazu

2018/09　Research paper (international conference proceedings)

Experimental assessment and analysis of super-resolution in fluorescence microscopy based on multiple-point spread function fitting of spectrally demultiplexed images

Takahiro Nishimura, Hitoshi Kimura, Yusuke Ogura, Jun Tanida

OPTICAL REVIEW　Vol. 25　No. 3　p. 384-390　2018/06　Research paper (scientific journal)

Lateral spatial resolution improvement in laser scanning fluorescence microscopy using a subdiffraction limit optical spot

Takahiro Nishimura, Daiki Shinkawa, Yusuke Ogura, Yosuke Tamada, Jun Tanida

BIOMEDICAL IMAGING AND SENSING CONFERENCE　Vol. 10711　2018/04　Research paper (international conference proceedings)

Experimental assessment and analysis of super resolution in fluorescence microscopy based on multiple-point spread function fitting of spectrally demultiplexed images

Takahiro Nishimura, Hitoshi Kimura, Yusuke Ogura, Jun Tanida

Optical Review　Vol. 25　p. 384-390　2018/03　Research paper (scientific journal)

Photothermal fabrication of microscale patterned DNA hydrogels

Suguru Shimomura, Takahiro Nishimura, Yusuke Ogura, Jun Tanida

ROYAL SOCIETY OPEN SCIENCE　Vol. 5　No. 2　2018/02　Research paper (scientific journal)

Photonically driven DNA nanomachine with hybrid functions towards cell measurement

Yusuke Ogura, Takahiro Nishimura, Kenji Yamada, Jun Tanida

Progress in Biomedical Optics and Imaging - Proceedings of SPIE　Vol. 10510　2018　Research paper (international conference proceedings)

Photothermal Fabrication of Microscale Patterned DNA Hydrogels

Suguru Shimomura, Takahiro Nishimura, Yusuke Ogura, Jun Tanida

Royal Society Open Science　Vol. 5　2018/01　Research paper (scientific journal)

Photonically driven DNA nanomachine with hybrid functions towards cell measurement

Yusuke Ogura, Takahiro Nishimura, Kenji Yamada, Jun Tanida

FRONTIERS IN BIOLOGICAL DETECTION: FROM NANOSENSORS TO SYSTEMS X　Vol. 10510　2018/01　Research paper (international conference proceedings)

A molecular-sized optical logic circuit for digital modulation of a fluorescence signal

Takahiro Nishimura, Karin Tsuchida, Yusuke Ogura, Jun Tanida

THIRD INTERNATIONAL CONFERENCE ON PHOTONICS SOLUTIONS (ICPS2017)　Vol. 10714　2017/11　Research paper (international conference proceedings)

Photo-induced formation of DNA hydrogel using quenchers

Suguru Shimomura, Takahitro Nishimura, Yusuke Ogura, Jun Tanida

2017/09

A photonic DNA processor using excitation energy transfer-based signaling

Takaniro Nishimura, Yusuke Ogura, Jun Tanida

2017/09

Quantitative evaluation of DNA hydrogel growth induced by light

Suguru Shimomura, Takahiro Nishimura, Yusuke Ogura, Jun Tanida

2017/09　Research paper (international conference proceedings)

Optical fabrication of patterned DNA hydrogel

Takahiro Nishimura, Suguru Shimomura, Yusuke Ogura, Jun Tanida

2017/06　Research paper (international conference proceedings)

Fluorescence encoded super resolution imaging based on a location estimation algorithm for high-density fluorescence probes

Takahiro Nishimura, Hitoshi Kimura, Yusuke Ogura, Jun Tanida

OPTICAL REVIEW　Vol. 24　No. 2　p. 212-218　2017/04　Research paper (scientific journal)

Bayesian-based localization of fluorescence-encoded images for single shot super-resolution fluorescence imaging

Takahiro Nishimura, Hitoshi Kimura, Yusuke Ogura, Jun Tanida

2017/04　Research paper (international conference proceedings)

Optical Fabrication of DNA Hydrogel Using Holographic Pattern

Suguru Shimomura, Takahiro Nishimura, Yusuke Ogura, Jun Tanida

2017/04　Research paper (international conference proceedings)

Bayesian based fluorescence coded imaging using quantum dots

Takahiro Nishimura, Hitoshi Kimura, Yusuke Ogura, Jun Tanida

BIOMEDICAL IMAGING AND SENSING CONFERENCE　Vol. 10251　2017　Research paper (international conference proceedings)

Multiplexed fluorescence readout using time responses of color coded signals for biomolecular detection

Takahiro Nishimura, Yusuke Ogura, Jun Tanida

BIOMEDICAL OPTICS EXPRESS　Vol. 7　No. 12　p. 5284-5293　2016/12　Research paper (scientific journal)

Bayesian-based Localization of Fluorescence-encoded Images for Single Shot Superresolution Fluorescence Imaging

Hitoshi Kimura, Takahiro Nishimura, Yusuke Ogura, Jun Tanida

2016/05　Research paper (international conference proceedings)

Optically controlled release of DNA based on nonradiative relaxation process of quenchers

Yusuke Ogura, Atsushi Onishi, Takahiro Nishimura, Jun Tanida

BIOMEDICAL OPTICS EXPRESS　Vol. 7　No. 6　p. 2142-2153　2016/05　Research paper (scientific journal)

Bayesian-based PSF decomposition of fluorescence coded images for super-resolution fluorescence imaging

Hitoshi Kimura, Takahiro Nishimura, Yusuke Ogura, Jun Tanida

2015/09　Research paper (international conference proceedings)

Biomolecular sensing with in-situ computation by photonic DNA computing

Yusuke Ogura, Takahiro Nishimura, Jun Tanida

2015/09　Research paper (international conference proceedings)

Optically controllable molecular logic circuits

Takahiro Nishimura, Ryo Fujii, Yusuke Ogura, Jun Tanida

APPLIED PHYSICS LETTERS　Vol. 107　No. 1　2015/07　Research paper (scientific journal)

Nanoscale energy-route selector consisting of multiple photo-switchable fluorescence-resonance-energy-transfer structures on DNA

Ryo Fujii, Takahiro Nishimura, Yusuke Ogura, Jun Tanida

OPTICAL REVIEW　Vol. 22　No. 2　p. 316-321　2015/02　Research paper (scientific journal)

Paper-based surface enhanced Raman spectroscopy of phenobarbital sodium for point-of-care therapeutic drug monitoring

Moe Yokoyama, Kenji Yamada, Takahiro Nishimura, Michiko Kido, Hieyong Jeong, Yuko Ohno

Progress in Biomedical Optics and Imaging - Proceedings of SPIE　Vol. 9332　2015　Research paper (international conference proceedings)

Paper-based surface enhanced Raman spectroscopy of phenobarbital sodium for point-of-care therapeutic drug monitoring

Moe Yokoyama, Kenji Yamada, Takahiro Nishimura, Michiko Kido, Hieyong Jeong, Yuko Ohno

OPTICAL DIAGNOSTICS AND SENSING XV: TOWARD POINT-OF-CARE DIAGNOSTICS　Vol. 9332　2015　Research paper (international conference proceedings)

Raman spectroscopy of tear fluid with paper substrates for point-of-care therapeutic drug monitoring

Yokoyama Moe, Nishimura Takahiro, Yamada Kenji, Jeong Hieyong, Kido Michiko, Sakurai Yoshiaki, Ohno Yuko

Journal of Nursing Science and Engineering　Vol. 2　No. 1　p. 25-31　2015/01

Optical switch of FRET-based molecular logic processes with a nanoscale energy-route selector

Ryo Fujii, Takahiro Nishimura, Yusuke Ogura, Jun Tanida

2014/12　Research paper (international conference proceedings)

Photonic DNA Processors for Optical Communication between Nano and MacroWorld

Takahiro Nishimura, Yusuke Ogura, Kenji Yamada, Yuko Ohno, Jun Tanida

IEICE Proceeding Series　No. 46　p. 582-585　2014/09　Research paper (international conference proceedings)

An implementation of stochastic computing using DNA hybridization and fluorescence resonance energy transfer

Takahiro Nishimura, Yusuke Ogura, Jun Tanida

2014/09　Research paper (international conference proceedings)

Biomolecule-to-fluorescent-color encoder: modulation of fluorescence emission via DNA structural changes

Takahiro Nishimura, Yusuke Ogura, Kenji Yamada, Yuko Ohno, Jun Tanida

BIOMEDICAL OPTICS EXPRESS　Vol. 5　No. 7　p. 2082-2090　2014/07　Research paper (scientific journal)

Optical Control of FRET Path for Programmable Molecular Sensing

Ryo Fujii, Takahiro Nishimura, Yusuke Ogura, Jun Tanida

2014/04　Research paper (international conference proceedings)

Feasibility Study of Multiplex Biomolecular Detection based on Biomolecule-to-fluorescence-color Encode

Takahiro Nishimura, Yusuke Ogura, Kenji Yamada, Yuko Ohno, Jun Tanida

2014/04　Research paper (international conference proceedings)

Amplification and modulation of fluorescent signals by using hybridization chain reactions for multiplexed sensing of biomolecules in a one-pot

Takahiro Nishimura, Yusuke Ogura, Kenji Yamada, Yuko Ohno, Jun Tanida

Progress in Biomedical Optics and Imaging - Proceedings of SPIE　Vol. 8954　2014　Research paper (international conference proceedings)

Evaluation of the three-dimensional endoscope system for assessing the gastrointestinal motility

Kayo Yoshimoto, Kenji Yamada, Kenji Watabe, Maki Takeda, Takahiro Nishimura, Michiko Kido, Toshiaki Nagakura, Hideya Takahashi, Tsutomu Nishida, Hideki Iijima, Masahiko Tsujii, Tetsuo Takehara, Yuko Ohno

Progress in Biomedical Optics and Imaging - Proceedings of SPIE　Vol. 8935　2014　Research paper (international conference proceedings)

Gastric Contraction Imaging System Using a 3-D Endoscope.

Kayo Yoshimoto, Kenji Yamada, Kenji Watabe, Maki Takeda, Takahiro Nishimura, Michiko Kido, Toshiaki Nagakura, Hideya Takahashi, Tsutomu Nishida, Hideki Iijima, Masahiko Tsujii, Tetsuo Takehara, Yuko Ohno

IEEE journal of translational engineering in health and medicine　Vol. 2　p. 1800208-1800208　2014　Research paper (scientific journal)

Amplification and modulation of fluorescent signals by using hybridization chain reactions for multiplexed sensing of biomolecules in a one-pot

Takahiro Nishimura, Yusuke Ogura, Kenji Ymada, Yuko Ohno, Jun Tanida

NANOSCALE IMAGING, SENSING, AND ACTUATION FOR BIOMEDICAL APPLICATIONS XI　Vol. 8954　2014　Research paper (international conference proceedings)

Paper-based Raman spectroscopy for on-site therapeutic drug monitoring

Moe Yokoyama, Takahiro Nishimura, Kenji Yamada, Yuko Ohno

2014 IEEE Healthcare Innovation Conference (HIC)　p. 207-210　2014　Research paper (international conference proceedings)

Feasibility study of paper-based surface enhanced Raman spectroscopy of tear fluids for onsite therapeutic drug monitoring

Moe Yokoyama, Takahiro Nishimura, Kenji Yamada, Michiko Kido, Yuko Ohno, Yoshiaki Sakurai, Daiki Mita, Yoshinori Yamaguchi, Eiichi Tamiya, Toshiaki Nagakura

2014 WORLD AUTOMATION CONGRESS (WAC): EMERGING TECHNOLOGIES FOR A NEW PARADIGM IN SYSTEM OF SYSTEMS ENGINEERING　2014　Research paper (international conference proceedings)

Evaluation of the three-dimensional endoscope system for assessing the gastrointestinal motility

Kayo Yoshimoto, Kenji Yamada, Kenji Watabe, Maki Takeda, Takahiro Nishimura, Michiko Kido, Toshiaki Nagakura, Hideya Takahashi, Tsutomu Nishida, Hideki Iijima, Masahiko Tsujii, Tetsuo Takehara, Yuko Ohno

ADVANCED BIOMEDICAL AND CLINICAL DIAGNOSTIC AND SURGICAL GUIDANCE SYSTEMS XII　Vol. 8935　2014　Research paper (international conference proceedings)

Fluorescence amplification based on DNA structural changes for enzyme-free detection of microRNA

Takahiro Nishimura, Kenji Yamada, Yuko Ohno, Yusuke Ogura, Lun Tanida

2014 WORLD AUTOMATION CONGRESS (WAC): EMERGING TECHNOLOGIES FOR A NEW PARADIGM IN SYSTEM OF SYSTEMS ENGINEERING　2014　Research paper (international conference proceedings)

Photonic DNA nano-processor: a photonics-based approach to molecular processing mediated by DNA

Yusuke Ogura, Takahiro Nishimura, Hirotsugu Yamamoto, Kenji Yamada, Jun Tanida

Nanophotonic Information Physics (Springer)　p. 91-113　2013/12　Research paper (scientific journal)

Optically programmable molecular information processing

Yusuke Ogura, Ryo Fujii, Takahiro Nishimura, Yuki Kazayama, Jun Tanida

The 3rd Japan-Korea Workshop on Digital Holography and Information Photonics (DHIP2013)　2013/11　Research paper (international conference proceedings)

Optical Control of Fluorescence Resonance Energy Transfer Paths in Photonic DNA Nano-processor

Yusuke Ogura, Ryo Fujii, Takahiro Nishimura, Jun Tanida

2013/10　Research paper (international conference proceedings)

Optical manipulation of liquid-based microreactors in optofluidic dna computation

Takahiro Nishimura, Yuki Kazayama, Yusuke Ogura, Jun Tanida

Optical Trapping Applications, OTA 2013　2013　Research paper (international conference proceedings)

Photonic DNA processors with fluorescence resonance energy transfer-based signaling

T. Nishimura, Y. Ogura, H. Yamamoto, K. Yamada, J. Tanida

Pacific Rim Conference on Lasers and Electro-Optics, CLEO - Technical Digest　2013　Research paper (international conference proceedings)

A Nanoscale Set-Reset Flip-Flop in Fluorescence Resonance Energy Transfer-Based Circuits

Takahiro Nishimura, Yusuke Ogura, Jun Tanida

APPLIED PHYSICS EXPRESS　Vol. 6　No. 1　2013/01　Research paper (scientific journal)

Amplification and encoding of biomolecular signals with designed reactions of DNA

Takahiro Nishimura, Kenji Yamada, Yuko Ohno, Yusuke Ogura, Jun Tanida

6TH BIOMEDICAL ENGINEERING INTERNATIONAL CONFERENCE (BMEICON 2013)　2013　Research paper (international conference proceedings)

Proposal of estimation method for drug concentration in blood by Raman spectroscopy of tear fluids

Moe Yokoyama, Takahiro Nishimura, Kenji Yamada, Yuko Ohno, Yoshiaki Sakurai

6TH BIOMEDICAL ENGINEERING INTERNATIONAL CONFERENCE (BMEICON 2013)　2013　Research paper (international conference proceedings)

Fluorescence resonance energy transfer-based molecular logic circuit using a DNA scaffold

Takahiro Nishimura, Yusuke Ogura, Jun Tanida

APPLIED PHYSICS LETTERS　Vol. 101　No. 23　2012/12　Research paper (scientific journal)

Functional molecular sensing using photonic DNA nano-processor（共著）

Yusuke Ogura, Takahiro Nishimura, Hirotsugu Yamamoto, Kenji Yamada, Jun Tanida

Technical digest of the 1st International Workshop on Information Physics and Computing in Nano-scale Photonics and Materials (IPCN)　2012/09　Research paper (international conference proceedings)

Optofluidic DNA computation based on optically manipulated microdroplets

Takahiro Nishimura, Yusuke Ogura, Jun Tanida

MICROFLUIDICS AND NANOFLUIDICS　Vol. 13　No. 1　p. 1-7　2012/07　Research paper (scientific journal)

Reusable molecular sensor based on photonic activation control of DNA probes

Takahiro Nishimura, Yusuke Ogura, Jun Tanida

BIOMEDICAL OPTICS EXPRESS　Vol. 3　No. 5　p. 920-926　2012/05　Research paper (scientific journal)

1I1534 DNA scaffold logic : logic operation on molecular inputs using FRET cascades(Bioinformatics & Bioengineering,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Nishimura Takahiro, Ogura Yusuke, Yamamoto Hirotsugu, Yamada Kenji, Tanida Jun

Seibutsu Butsuri　Vol. 52　2012

Large-area manipulation of microdroplets by holographic optical tweezers based on a hybrid diffractive system

Yusuke Ogura, Yuki Kazayama, Takahiro Nishimura, Jun Tanida

APPLIED OPTICS　Vol. 50　No. 34　p. H36-H41　2011/12　Research paper (scientific journal)

Evaluation of holographic optical tweezers based on a hybrid diffractive system for manipulating microdroplets

Yuki Kazayama, Takahiro Nishimura, Yusuke Ogura, Jun Tanida

2011/05　Research paper (international conference proceedings)

Spatially parallel control of DNA reactions in optically manipulated microdroplets

Yusuke Ogura, Takahiro Nishimura, Jun Tanida

JOURNAL OF NANOPHOTONICS　Vol. 5　2011/05　Research paper (scientific journal)

Prototype demonstration of a photonic DNA processor : A photonically-controlled DNA nanomachine of sensing, computing, and actuating

NISHIMURA T.

8th Annual Conference on Foundations of Nanoscience, 2011　p. 181-182　2011/04　Research paper (international conference proceedings)

3J1346 Bio-molecular sensing by use of DNA that can be activated and reset via photonic signals(Bioengineering2,The 49th Annual Meeting of the Biophysical Society of Japan)

Nishimura Takahiro, Ogura Yusuke, Yamamoto Hirotsugu, Yamada Kenji, Tanida Jun

Seibutsu Butsuri　Vol. 51　2011

Optical manipulation of microdroplets by use of a spatial light modulator and a static computer generated hologram

Y. Ogura, Y. Kazayama, T. Nishimura, J. Tanida

2011 ICO International Conference on Information Photonics, IP 2011　2011　Research paper (international conference proceedings)

A photonic DNA processor: concept and implementation

Takahiro Nishimura, Yusuke Ogura, Kenji Yamada, Hirotsugu Yamamoto, Jun Tanida

NANOENGINEERING: FABRICATION, PROPERTIES, OPTICS, AND DEVICES VIII　Vol. 8102　2011　Research paper (international conference proceedings)

Nanoscale logic operation in optically manipulated micro-droplets

Yusuke Ogura, Takahiro Nishimura, Jun Tanida

NANOENGINEERING: FABRICATION, PROPERTIES, OPTICS, AND DEVICES VII　Vol. 7764　2010　Research paper (international conference proceedings)

Self-Contained Photonically-Controlled DNA Tweezers

Yusuke Ogura, Takahiro Nishimura, Jun Tanida

APPLIED PHYSICS EXPRESS　Vol. 2　No. 2　2009/02　Research paper (scientific journal)

State-transition of DNA nanomachines based on photonic control

Yusuke Ogura, Takahiro Nishimura, Jun Tanida

NANOENGINEERING: FABRICATION, PROPERTIES, OPTICS, AND DEVICES V　Vol. 7039　2008　Research paper (international conference proceedings)