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Fluorescence Microscopy and Immunoblotting for Mitophagy in Budding Yeast
Yuki Nakayama, Koji Okamoto
Methods in Molecular Biology No. 2845 p. 1-14 2024/08/09 Part of collection (book)
Publisher: Springer US
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The nascent polypeptide-associated complex subunit Egd1 is required for efficient selective mitochondrial degradation in budding yeast
Yuan Tian, Koji Okamoto
Scientific Reports Vol. 14 No. 1 2024/01/04 Research paper (scientific journal)
Publisher: Springer Science and Business Media LLC
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A ubiquitin-proteasome pathway degrades the inner nuclear membrane protein Bqt4 to maintain nuclear membrane homeostasis
Toan Khanh Le, Yasuhiro Hirano, Haruhiko Asakawa, Koji Okamoto, Tatsuo Fukagawa, Tokuko Haraguchi, Yasushi Hiraoka
Journal of Cell Science Vol. jcs.260930 2023/09/11 Research paper (scientific journal)
Publisher: The Company of Biologists
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The GET pathway serves to activate Atg32-mediated mitophagy by ER targeting of the Ppg1-Far complex
Mashun Onishi, Mitsutaka Kubota, Lan Duan, Yuan Tian, Koji Okamoto
Life Science Alliance Vol. 6 No. 4 p. e202201640-e202201640 2023/01/25 Research paper (scientific journal)
Publisher: Life Science Alliance, LLC
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An overview of the molecular mechanisms of mitophagy in yeast
Schuster R, Okamoto K
Biochimica et Biophysica Acta - General Subjects 2022/11 Research paper (scientific journal)
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The protein N-terminal acetyltransferase A complex contributes to yeast mitophagy via promoting expression and phosphorylation of Atg32.
Kubota M, Okamoto K
J Biochem. Vol. 170 No. 2 p. 175-182 2021/10
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The GET pathway serves to activate Atg32-mediated mitophagy by ER targeting of the Ppg1-Far complex
Mashun Onishi, Koji Okamoto
2021/09/21
Publisher: Cold Spring Harbor Laboratory
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Mitochondrial dynamics and degradation in the oleaginous yeast Lipomyces starkeyi
Lan Duan, Koji Okamoto
Genes to Cells Vol. 26 No. 8 p. 627-635 2021/08 Research paper (scientific journal)
Publisher: Wiley
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Regulatory mechanisms of mitophagy in yeast
Yang Liu, Koji Okamoto
Biochimica et Biophysica Acta (BBA) - General Subjects Vol. 1865 No. 5 p. 129858-129858 2021/05 Research paper (scientific journal)
Publisher: Elsevier BV
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Mitochondrial clearance: mechanisms and roles in cellular fitness.
Onishi M, Okamoto K
FEBS Lett. Vol. 595 No. 8 p. 1239-1263 2021/04 Research paper (scientific journal)
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Molecular mechanisms and physiological functions of mitophagy
Mashun Onishi, Koji Yamano, Miyuki Sato, Noriyuki Matsuda, Koji Okamoto
The EMBO Journal Vol. 40 No. 3 2021/02 Research paper (scientific journal)
Publisher: EMBO
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Selective autophagy of intracellular organelles: Recent research advances
Wen Li, Pengcheng He, Yuge Huang, Yi-Fang Li, Jiahong Lu, Min Li, Hiroshi Kurihara, Zhuo Luo, Tian Meng, Mashun Onishi, Changle Ma, Lei Jiang, Yongquan Hu, Qing Gong, Dongxing Zhu, Yiming Xu, Rong Liu, Lei Liu, Cong Yi, Yushan Zhu, Ningfang Ma, Koji Okamoto, Zhiping Xie, Jinbao Liu, Rong-Rong He, Du Feng
Theranostics Vol. 11 No. 1 p. 222-256 2021 Research paper (scientific journal)
Publisher: Ivyspring International Publisher
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Detection of mitophagy in mammalian cells, mice, and yeast.
Calvelli Hannah, Krigman Judith, Onishi Mashun, Narendra Derek P, Sun Nuo, Okamoto Koji
Methods in Cell Biology Vol. 155 p. 557-579 2020 Research paper (scientific journal)
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Repression of mitochondrial metabolism for cytosolic pyruvate-derived chemical production in Saccharomyces cerevisiae.
Morita Keisuke, Matsuda Fumio, Okamoto Koji, Ishii Jun, Kondo Akihiko, Shimizu Hiroshi
Microbial Cell Factories Vol. 18 No. 1 p. 177-177 2019/10/15
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The Paf1 complex transcriptionally regulates the mitochondrial-anchored protein Atg32 leading to activation of mitophagy.
Zheng Liangde, Shu Wen-Jie, Li Yu-Min, Mari Muriel, Yan Chaojun, Wang Dehe, Yin Zhao-Hong, Jiang Wei, Zhou Yu, Okamoto Koji, Reggiori Fulvio, Klionsky Daniel J, Song Zhiyin, Du Hai-Ning
Autophagy p. 1-14 2019/09/19
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A Mammalian Mitophagy Receptor, Bcl2-L-13, Recruits the ULK1 Complex to Induce Mitophagy.
Murakawa Tomokazu, Okamoto Koji, Omiya Shigemiki, Taneike Manabu, Yamaguchi Osamu, Otsu Kinya
Cell Reports Vol. 26 No. 2 p. 338-345 2019/01 Research paper (scientific journal)
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Mitochondrial stasis reveals p62-mediated ubiquitination in Parkin-independent mitophagy.
Yamada Tatsuya, Murata Daisuke, Adachi Yoshihiro, Itoh Kie, Kameoka Shoichiro, Igarashi Atsushi, Kato Takashi, Araki Yoichi, Huganir Richard L, Dawson Ted M, Yanagawa Toru, Okamoto Koji, Iijima Mlho, Sesaki Hiromi
Cell Metabolism Vol. 28 No. 4 p. 588-604 2018/10 Research paper (scientific journal)
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The TORC1 signaling pathway regulates respiration-induced mitophagy in yeast
Yang Liu, Koji Okamoto
Biochemical and Biophysical Research Communications Vol. 502 No. 1 p. 76-83 2018/07/07 Research paper (scientific journal)
Publisher: Elsevier B.V.
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The Nem1-Spo7 protein phosphatase complex is required for efficient mitophagy in yeast
Xueyan Xu, Koji Okamoto
Biochemical and Biophysical Research Communications Vol. 496 No. 1 p. 51-57 2018/01/29 Research paper (scientific journal)
Publisher: Elsevier B.V.
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The ER membrane insertase Get1/2 is required for efficient mitophagy in yeast
Mashun Onishi, Sachiyo Nagumo, Shohei Iwashita, Koji Okamoto
Biochemical and Biophysical Research Communications Vol. 503 No. 1 p. 14-20 2018 Research paper (scientific journal)
Publisher: Elsevier B.V.
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Investigation of Yeast Mitophagy with Fluorescence Microscopy and Western Blotting.
Nagumo Sachiyo, Okamoto Koji
Methods in Molecular Biology Vol. 1759 2017/03 Research paper (scientific journal)
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Assays for mitophagy in yeast
Akinori Eiyama, Koji Okamoto
Methods in Molecular Biology Vol. 1567 p. 337-347 2017 Part of collection (book)
Publisher: Humana Press Inc.
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Phospholipid methylation controls Atg32-mediated mitophagy and Atg8 recycling
Sakakibara Kaori, Eiyama Akinori, Suzuki Sho W, Sakoh-Nakatogawa Machiko, Okumura Nobuaki, Tani Motohiro, Hashimoto Ayako, Nagumo Sachiyo, Kondo-Okamoto Noriko, Kondo-Kakuta Chika, Asai Eri, Kirisako Hiromi, Nakatogawa Hitoshi, Kuge Osamu, Takao Toshifumi, Ohsumi Yoshinori, Okamoto Koji
EMBO Journal Vol. 34 No. 21 p. 2703-2719 2015/11 Research paper (scientific journal)
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Protein N-terminal Acetylation by the NatA Complex Is Critical for Selective Mitochondrial Degradation
Eiyama Akinori, Okamoto Koji
Journal of Biological Chemistry Vol. 290 No. 41 p. 25034-25044 2015/10 Research paper (scientific journal)
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Bcl-2-like protein 13 is a mammalian Atg32 homologue that mediates mitophagy and mitochondrial fragmentation.
Tomokazu Murakawa, Osamu Yamaguchi, Ayako Hashimoto, Shungo Hikoso, Toshihiro Takeda, Takafumi Oka, Hiroki Yasui, Hiromichi Ueda, Yasuhiro Akazawa, Hiroyuki Nakayama, Manabu Taneike, Tomofumi Misaka, Shigemiki Omiya, Ajay M Shah, Akitsugu Yamamoto, Kazuhiko Nishida, Yoshinori Ohsumi, Koji Okamoto, Yasushi Sakata, Kinya Otsu
Nature communications Vol. 6 p. 7527-7527 2015/07/06 Research paper (scientific journal)
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Enhancement of Ethanol Fermentation in Saccharomyces cerevisiae Sake Yeast by Disrupting Mitophagy Function
Shiroma Shodai, Jayakody Lahiru Niroshan, Horie Kenta, Okamoto Koji, Kitagaki Hiroshi
Applied and Environmental Microbiology Vol. 80 No. 3 p. 1002-1012 2014/02 Research paper (scientific journal)
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2SAA-04 Targeting Autophagy for Mitochondrial Clearance(2SAA Mitochondrial neo-biology explored from a membrane dynamics,Symposium,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))
Okamoto Koji
Seibutsu Butsuri Vol. 54 No. 1 2014
Publisher: The Biophysical Society of Japan General Incorporated Association
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Mitochondrial degradation during starvation is selective and temporally distinct from bulk autophagy in yeast
Akinori Eiyama, Noriko Kondo-Okamoto, Koji Okamoto
FEBS Letters Vol. 587 No. 12 p. 1787-1792 2013/06/19 Research paper (scientific journal)
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Autophagy-related Protein 32 Acts as Autophagic Degron and Directly Initiates Mitophagy
Kondo-Okamoto Noriko, Noda Nobuo N, Suzuki Sho W, Nakatogawa Hitoshi, Takahashi Ikuko, Matsunami Miou, Hashimoto Ayako, Inagaki Fuyuhiko, Ohsumi Yoshinori, Okamoto Koji
Journal of Biological Chemistry Vol. 287 No. 13 p. 10631-10638 2012/03 Research paper (scientific journal)
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Structure-Function Analysis of the Yeast Mitochondrial Rho GTPase, Gem1p
Koshiba Takumi, Holman Holly A, Kubara Kenji, Yasukawa Kai, Kawabata Shun-ichiro, Okamoto Koji, Macfarlane Jane, Shaw Janet M
Journal of Biological Chemistry Vol. 286 No. 1 p. 354-362 2011/01 Research paper (scientific journal)
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Mitochondria-Anchored Receptor Atg32 Mediates Degradation of Mitochondria via Selective Autophagy
Okamoto Koji, Kondo-Okamoto Noriko, Ohsumi Yoshinori
Developmental Cell Vol. 17 No. 1 p. 87-97 2009/07 Research paper (scientific journal)
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Multiple pathways influence mitochondrial inheritance in budding yeast
Frederick Rebecca L, Okamoto Koji, Shaw Janet M
Genetics Vol. 178 No. 2 p. 825-837 2008/02 Research paper (scientific journal)
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2P-043 Biochemical analysis of an mitochondrial GTPase, Gemlp(The 46th Annual Meeting of the Biophysical Society of Japan)
Yasukawa Kai, Kubara Kenji, Kawabata Shun-ichiro, Okamoto Koji, Koshiba Takumi
Seibutsu Butsuri Vol. 48 2008
Publisher: The Biophysical Society of Japan General Incorporated Association
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Tetratricopeptide repeat proteins Tom70 and Tom71 mediate yeast mitochondrial morphogenesis
Kondo-Okamoto Noriko, Shaw Janet M, Okamoto Koji
EMBO Reports Vol. 9 No. 1 p. 63-69 2008/01 Research paper (scientific journal)
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The novel F-box protein Mfb1p regulates mitochondrial connectivity and exhibits asymmetric localization in yeast.
Kondo-Okamoto Noriko, Ohkuni Kentaro, Kitagawa Katsumi, McCaffery J.Micahel, Shaw Janet M, Okamoto Koji
Molecular Biology of the Cell Vol. 17 No. 9 p. 3757-3767 2006/06 Research paper (scientific journal)
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Up-to-dating of complete sequenced DNA data of Hansenula wingei yeast mitochondria.
Sekito Takayuki, Okamoto Koji, Kitano Hiromichi, Yoshida Kazuo
Nucleic Acids Symposium Series Vol. 48 p. 179-180 2004/11 Research paper (scientific journal)
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Yeast Miro GTPase, Gem1p, regulates mitochondrial morphology via a novel pathway
Frederick Rebecca L, McCaffery John Michael, Cunningham Kyle W, Okamoto Koji, Shaw Janet M
Journal of Cell Biology Vol. 167 No. 1 p. 87-98 2004/10 Research paper (scientific journal)
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Levels of human Fis1 at the mitochondrial outer membrane regulate mitochondrial morphology
Ryan Stojanovski Diana, Koutsopoulos Olga S, Okamoto Koji, Ryan Michael T
Journal of Cell Science Vol. 117 No. 7 p. 1201-1210 2004/03 Research paper (scientific journal)
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Mmm1p spans both the outer and inner mitochondrial membranes and contains distinct domains for targeting and foci formation
Kondo-Okamoto Noriko, Shaw Janet M, Okamoto Koji
Journal of Biological Chemistry Vol. 278 No. 49 p. 48997-49005 2003/12 Research paper (scientific journal)
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The protein import motor of mitochondria: a targeted molecular ratchet driving unfolding and translocation
Okamoto Koji, Brinker Achim, Paschen Stefan A, Moarefi Ismail, Hayer-Hartl Manajit, Neupert Walter, Brunner Michael
EMBO Journal Vol. 21 No. 14 p. 3659-3671 2002/07 Research paper (scientific journal)
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Mitochondrial protein import: Molecular basis of the ATP-dependent interaction of MtHsp70 with Tim44
Moro Fernando, Okamoto Koji, Donzeau Mariel, Neupert Walter, Brunner Michael
Journal of Biological Chemistry Vol. 277 No. 9 p. 6874-6880 2002/03 Research paper (scientific journal)
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Replication and preferential inheritance of hypersuppressive petite mitochondrial DNA
MacAlpine David M, Kolesar Jill, Okamoto Koji, Butow Ronald A, Perlman Philip S
EMBO Journal Vol. 20 No. 7 p. 1807-1817 2001/04 Research paper (scientific journal)
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The sorting of mitochondrial DNA and mitochondrial proteins in zygotes: Preferential transmission of mitochondrial DNA to the medial bud
Okamoto Koji, Perlman Philip S, Butow Ronald A
Journal of Cell Biology Vol. 142 No. 3 p. 613-623 1998/08 Research paper (scientific journal)
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Functions of the high mobility group protein, Abf2p, in mitochondrial DNA segregation, recombination and copy number in Saccharomyces cerevisiae
Zelenaya-Troitskaya Olga, Newman Scott M, Okamoto Koji, Perlman Philip S, Butow Ronald A
Genetics Vol. 148 No. 4 p. 1763-1776 1998/04 Research paper (scientific journal)
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The secondary structure and phylogenetic relationship deduced from complete nucleotide sequence of mitochondrial small subunit rRNA in yeast Hansenula wingei
Okamoto Koji, Sekito Takayuki, Yoshida Kazuo
Genes & Genetic Systems Vol. 71 No. 2 p. 69-74 1996/04 Research paper (scientific journal)
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The Origin and Evolution of Mitochondrion 1. The Evolution of Yeast Mitochondrial Genomes.
KITANO Hiromichi, SEKITO Takayuki, OKAMOTO Kozi, ISHITOMI Hitoshi, YOSHIDA Kazuo
Viva origino Vol. 24 No. 1 p. 92-93 1996/03/13
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Is the evolution of mitochondrial genes independent from that of the corresponding nuclear genes in fungi? Construction of molecular phylogenetic trees based on mitochondrial small rRNA.
Yoshida Kazuo, Okamoto Koji, Sekito Takayuki
Nucleic Acids Symposium Series Vol. 35 p. 275-276 1996 Research paper (scientific journal)
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Clone Bank of the Mitochondrial Genome of Yeast Hansenula Wingei
Sekito Takayuki, Okamoto Koji, Kitano Hiromichi, Yoshida Kazuo
Yeast Vol. 11 No. 13 p. 1317-1321 1995/10 Research paper (scientific journal)
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The Complete Mitochondrial DNA Sequence of Hansenula Wingei Reveals New Characteristics of Yeast Mitochondria
Sekito Takayuki, Okamoto Koji, Kitano Hiromichi, Yoshida Kazuo
Current Genetics Vol. 28 No. 1 p. 39-53 1995/06 Research paper (scientific journal)
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The Mitochondrial Genome of Yeast Hansenula Wingei Encodes NADH Dehydrogenase Subunit Genes ND4L and ND5
Okamoto Koji, Sekito Takayuki, Yoshida Kazuo
Molecular Genetics and Genomics Vol. 243 No. 4 p. 473-476 1994/05 Research paper (scientific journal)
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Yeast Hansenula wingei mitochondrial genome's complete DNA sequence demonstrated unique characteristics.
Sekito Takayuki, Okamoto Koji, Kitano Hiromichi, Yoshida Kazuo
Nucleic Acids Symposium Series Vol. 31 p. 233-234 1994 Research paper (scientific journal)
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Nucleotide Sequences and Secondary Structures of Four tRNA Genes in Mitochondrial DNA of Hansenula Wingei Yeast
Sekito Takayuki, Okamoto Koji, Suzuki Katsunori, Yoshida Kazuo
Nucleic Acids Symposium Series Vol. 21 No. 15 p. 3589-3589 1993/07 Research paper (scientific journal)
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Nucleotide sequences of ten mitochondrial tRNA genes in yeast Hansenula wingei
Okamoto Koji, Suzuki Katsunori, Yoshida Kazuo
Nucleic Acids Research Vol. 20 No. 9 p. 2373-2373 1992/05 Research paper (scientific journal)
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Physical mapping and RFLP analysis of mtDNAs from the ascosporogenous yeasts: Saccharomyces exiguus, S. kluyveri and Hansenula wingei
Kozi Okamoto, Katsunori Suzuki, Kazuo Yoshida
The Japanese Journal of Genetics Vol. 66 No. 6 p. 709-718 1991 Research paper (scientific journal)