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Diffusion model predicts the geometry of actin cytoskeleton from cell morphology
Honghan Li, Shiyou Liu, Shinji Deguchi, Daiki Matsunaga
PLOS Computational Biology Vol. 20 No. 8 p. e1012312-e1012312 2024/08/05 Research paper (scientific journal)
Publisher: Public Library of Science (PLoS)
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Intracellular Macromolecular Crowding within Individual Stress Fibers Analyzed by Fluorescence Correlation Spectroscopy
Aria Buenaventura, Takumi Saito, Taiga Kanao, Daiki Matsunaga, Tsubasa S. Matsui, Shinji Deguchi
Cellular and Molecular Bioengineering 2024/06/07 Research paper (scientific journal)
Publisher: Springer Science and Business Media LLC
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Asymmetric response emerges between creation and disintegration of force-bearing subcellular structures as revealed by percolation analysis.
Yuika Ueda, Daiki Matsunaga, Shinji Deguchi
Integrative biology : quantitative biosciences from nano to macro Vol. 16 2024/01/23 Research paper (scientific journal)
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Asymmetric bistability of chiral particle orientation in viscous shear flows
Andreas Zöttl, Francesca Tesser, Daiki Matsunaga, Justine Laurent, Olivia du Roure, Anke Lindner
Proceedings of the National Academy of Sciences Vol. 120 No. 45 2023/10/31 Research paper (scientific journal)
Publisher: Proceedings of the National Academy of Sciences
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Long-term molecular turnover of actin stress fibers revealed by advection-reaction analysis in fluorescence recovery after photobleaching
Takumi Saito, Daiki Matsunaga, Shinji Deguchi
PLOS ONE Vol. 17 No. 11 p. e0276909-e0276909 2022/11/07 Research paper (scientific journal)
Publisher: Public Library of Science (PLoS)
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A statistical mechanics model for determining the length distribution of actin filaments under cellular tensional homeostasis
Yuika Ueda, Daiki Matsunaga, Shinji Deguchi
Scientific Reports Vol. 12 No. 1 2022/08/24 Research paper (scientific journal)
Publisher: Springer Science and Business Media LLC
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Analysis of chemomechanical behavior of stress fibers by continuum mechanics-based FRAP
Takumi Saito, Daiki Matsunaga, Shinji Deguchi
Biophysical Journal Vol. 121 No. 15 p. 2921-2930 2022/08 Research paper (scientific journal)
Publisher: Elsevier BV
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Particle segregation using crystal-like structure of capsules in wall-bounded shear flow
Shunichi Ishida, Ryota Matsumoto, Daiki Matsunaga, Yohsuke Imai
Physical Review Fluids Vol. 7 No. 6 2022/06/10 Research paper (scientific journal)
Publisher: American Physical Society (APS)
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Field-controlling patterns of sheared ferrofluid droplets
Shunichi Ishida, Yaochen Yang, Fanlong Meng, Daiki Matsunaga
Physics of Fluids Vol. 34 No. 6 p. 063309-063309 2022/06 Research paper (scientific journal)
Publisher: AIP Publishing
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Wrinkle force microscopy: a machine learning based approach to predict cell mechanics from images
Honghan Li, Daiki Matsunaga, Tsubasa S. Matsui, Hiroki Aosaki, Genki Kinoshita, Koki Inoue, Amin Doostmohammadi, Shinji Deguchi
Communications Biology Vol. 5 No. 1 2022/04/14 Research paper (scientific journal)
Publisher: Springer Science and Business Media LLC
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Determining the domain-level reaction-diffusion properties of an actin-binding protein transgelin-2 within cells
Takumi Saito, Daiki Matsunaga, Tsubasa S. Matsui, Kentaro Noi, Shinji Deguchi
Experimental Cell Research Vol. 404 No. 1 p. 112619-112619 2021/07 Research paper (scientific journal)
Publisher: Elsevier BV
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Magnetic Microswimmers Exhibit Bose-Einstein-like Condensation
Fanlong Meng, Daiki Matsunaga, Benoît Mahault, Ramin Golestanian
Physical Review Letters Vol. 126 No. 7 2021/02/16 Research paper (scientific journal)
Publisher: American Physical Society ({APS})
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Rheology of a dilute ferrofluid droplet suspension in shear flow: Viscosity and normal stress differences
Shunichi Ishida, Daiki Matsunaga
Physical Review Fluids Vol. 5 No. 12 2020/12/15 Research paper (scientific journal)
Publisher: American Physical Society (APS)
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Image based cellular contractile force evaluation with small-world network inspired CNN: SW-UNet
Honghan Li, Daiki Matsunaga, Tsubasa S. Matsui, Hiroki Aosaki, Shinji Deguchi
Biochemical and Biophysical Research Communications Vol. 530 No. 3 p. 527-532 2020/09 Research paper (scientific journal)
Publisher: Elsevier BV
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Degenerate states, emergent dynamics and fluid mixing by magnetic rotors
Takuma Kawai, Daiki Matsunaga, Fanlong Meng, Julia M. Yeomans, Ramin Golestanian
Soft Matter 2020 Research paper (scientific journal)
Publisher: Royal Society of Chemistry (RSC)
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Complex viscosity of dilute capsule suspensions: a numerical study
Daiki MATSUNAGA, Yohsuke IMAI
Journal of Biomechanical Science and Engineering 2020 Research paper (scientific journal)
Publisher: Japan Society of Mechanical Engineers
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Diffusion and collective motion of rotlets in 2D space
Daiki Matsunaga, Takumi Chodo, Takuma Kawai
Chinese Physics B Vol. 29 No. 6 p. 064705-064705 2020 Research paper (scientific journal)
Publisher: IOP Publishing
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Multi-well plate cell contraction assay detects negatively correlated cellular responses to pharmacological inhibitors in contractility and migration
Foncham Jermia Nehwa, Tsubasa S. Matsui, Li Honghan, Daiki Matsunaga, Yoshiyuki Sakaguchi, Shinji Deguchi
Biochemical and Biophysical Research Communications Vol. 521 No. 2 p. 527-532 2020/01 Research paper (scientific journal)
Publisher: Elsevier {BV}
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Shear viscosity of bimodal capsule suspensions in simple shear flow
Hiroki Ito, Daiki Matsunaga, Yohsuke Imai
Physical Review Fluids Vol. 4 No. 11 2019/11/07 Research paper (scientific journal)
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Controlling collective rotational patterns of magnetic rotors
Daiki Matsunaga, Joshua K. Hamilton, Fanlong Meng, Nick Bukin, Elizabeth L. Martin, Feodor Y. Ogrin, Julia M. Yeomans, Ramin Golestanian
Nature Communications Vol. 10 No. 1 2019/10/16 Research paper (scientific journal)
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Tunable self-healing of magnetically propelling colloidal carpets
Helena Massana-Cid, Fanlong Meng, Daiki Matsunaga, Ramin Golestanian, Pietro Tierno
Nature Communications Vol. 10 No. 1 2019/06/04 Research paper (scientific journal)
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Magnetically-actuated artificial cilium: a simple theoretical model
Fanlong Meng, Daiki Matsunaga, Julia M. Yeomans, Ramin Golestanian
Soft Matter Vol. 15 No. 19 p. 3864-3871 2019/05 Research paper (scientific journal)
Publisher: Royal Society of Chemistry ({RSC})
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Far-field theory for trajectories of magnetic ellipsoids in rectangular and circular channels
Daiki Matsunaga, Andreas Zöttl, Fanlong Meng, Ramin Golestanian, Julia M Yeomans
IMA Journal of Applied Mathematics Vol. 83 No. 4 p. 767-782 2018/07/25 Research paper (scientific journal)
Publisher: Oxford University Press (OUP)
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Clustering of Magnetic Swimmers in a Poiseuille Flow
Meng, F., Matsunaga, D., Golestanian, R.
Physical Review Letters Vol. 120 No. 18 2018/05 Research paper (scientific journal)
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A Numerical Analysis of Rheology of Capsule Suspensions Using a GPU-Accelerated Boundary Element Method
Yohsuke Imai, Daiki Matsunaga
Frontiers in Computational Fluid-Structure Interaction and Flow Simulation p. 213-251 2018
Publisher: Springer International Publishing
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Focusing and Sorting of Ellipsoidal Magnetic Particles in Microchannels
Daiki Matsunaga, Fanlong Meng, Andreas Zottl, Ramin Golestanian, Julia M. Yeomans
PHYSICAL REVIEW LETTERS Vol. 119 No. 19 2017/11 Research paper (scientific journal)
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Reorientation of a single red blood cell during sedimentation
D. Matsunaga, Y. Imai, C. Wagner, T. Ishikawa
JOURNAL OF FLUID MECHANICS Vol. 806 p. 102-128 2016/11 Research paper (scientific journal)
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Rheology of a dense suspension of spherical capsules under simple shear flow
D. Matsunaga, Y. Imai, T. Yamaguchi, T. Ishikawa
JOURNAL OF FLUID MECHANICS Vol. 786 p. 110-127 2016/01 Research paper (scientific journal)
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A numerical model of a red blood cell infected by Plasmodium falciparum malaria: coupling cell mechanics with ligand-receptor interactions
Shunichi Ishida, Yohsuke Imai, Yuki Ichikawa, Stephanie Nix, Daiki Matsunaga, Toshihiro Omori, Takuji Ishikawa
SCIENCE AND TECHNOLOGY OF ADVANCED MATERIALS Vol. 17 No. 1 p. 454-461 2016 Research paper (scientific journal)
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Deformation of a micro-torque swimmer
Takuji Ishikawa, Tomoyuki Tanaka, Yohsuke Imai, Toshihiro Omori, Daiki Matsunaga
PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES Vol. 472 No. 2185 2016/01 Research paper (scientific journal)
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Shape matters: Near-field fluid mechanics dominate the collective motions of ellipsoidal squirmers
K. Kyoya, D. Matsunaga, Y. Imai, T. Omori, T. Ishikawa
PHYSICAL REVIEW E Vol. 92 No. 6 2015/12 Research paper (scientific journal)
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Deformation of a spherical capsule under oscillating shear flow
D. Matsunaga, Y. Imai, T. Yamaguchi, T. Ishikawa
JOURNAL OF FLUID MECHANICS Vol. 762 p. 288-301 2015 Research paper (scientific journal)
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Lateral migration of a spherical capsule near a plane wall in Stokes flow
S. Nix, Y. Imai, D. Matsunaga, T. Yamaguchi, T. Ishikawa
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics Vol. 90 No. 4 2014/10/15 Research paper (scientific journal)
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A full GPU implementation of a numerical method for simulating capsule suspensions
Daiki Matsunaga, Yohsuke Imai, Toshihiro Omori, Takuji Ishikawa, Takami Yamaguchi
Journal of Biomechanical Science and Engineering Vol. 9 No. 3 p. 1-16 2014 Research paper (scientific journal)
Publisher: Japan Society of Mechanical Engineers
