EN

基本情報

研究

社会活動

その他の活動

橋本 浩介

Hashimoto Kousuke

蛋白質研究所,准教授

keyword バイオインフォマティクス,シングルセル,トランスクリプトーム

学歴

  • 2004年04月 ~ 2009年03月,京都大学,バイオインフォマティクスセンター(修士・博士)

経歴

  • 2020年08月 ~ 継続中,大阪大学,蛋白質研究所,准教授
  • 2016年04月 ~ 2020年07月,理化学研究所,専任研究員
  • 2011年10月 ~ 2016年03月,理化学研究所,研究員
  • 2009年04月 ~ 2011年09月,アメリカ国立衛生研究所,NCBI,Postdoctoral fellow
  • 2006年04月 ~ 2009年03月,日本学術振興会特別研究員DC1

研究内容・専門分野

  • ライフサイエンス,ゲノム生物学
  • ライフサイエンス,免疫学

論文

  • Embryonic LTR retrotransposons supply promoter modules to somatic tissues,Kosuke Hashimoto,Eeva-Mari Jouhilahti,Virpi Töhönen,Piero Carninci,Juha Kere,Shintaro Katayama,Genome Research,Cold Spring Harbor Laboratory,Vol. 31,No. 11,p. 1983-1993,2021年11月,研究論文(学術雑誌)
  • Single-cell transcriptomics reveals expansion of cytotoxic CD4 T cells in supercentenarians,Kosuke Hashimoto,Tsukasa Kouno,Tomokatsu Ikawa,Norihito Hayatsu,Yurina Miyajima,Haruka Yabukami,Tommy Terooatea,Takashi Sasaki,Takahiro Suzuki,Matthew Valentine,Giovanni Pascarella,Yasushi Okazaki,Harukazu Suzuki,Jay W. Shin,Aki Minoda,Ichiro Taniuchi,Hideyuki Okano,Yasumichi Arai,Nobuyoshi Hirose,Piero Carninci,Proceedings of the National Academy of Sciences,Proceedings of the National Academy of Sciences,Vol. 116,No. 48,p. 24242-24251,2019年11月26日,研究論文(学術雑誌)
  • Single-Nucleotide Resolution Mapping of Hepatitis B Virus Promoters in Infected Human Livers and Hepatocellular Carcinoma,Kübra Altinel,Kosuke Hashimoto,Yu Wei,Christine Neuveut,Ishita Gupta,Ana Maria Suzuki,Alexandre Dos Santos,Pierrick Moreau,Tian Xia,Soichi Kojima,Sachi Kato,Yasuhiro Takikawa,Isao Hidaka,Masahito Shimizu,Tomokazu Matsuura,Akihito Tsubota,Hitoshi Ikeda,Sumiko Nagoshi,Harukazu Suzuki,Marie-Louise Michel,Didier Samuel,Marie Annick Buendia,Jamila Faivre,Piero Carninci,Journal of Virology,American Society for Microbiology,Vol. 90,No. 23,p. 10811-10822,2016年12月,研究論文(学術雑誌)
  • CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors,Kosuke Hashimoto,Ana Maria Suzuki,Alexandre Dos Santos,Christophe Desterke,Agnese Collino,Serena Ghisletti,Emilie Braun,Alessandro Bonetti,Alexandre Fort,Xian-Yang Qin,Enrico Radaelli,Bogumil Kaczkowski,Alistair R.R. Forrest,Soichi Kojima,Didier Samuel,Gioacchino Natoli,Marie Annick Buendia,Jamila Faivre,Piero Carninci,Genome Research,Cold Spring Harbor Laboratory,Vol. 25,No. 12,p. 1812-1824,2015年12月,研究論文(学術雑誌)
  • Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance,Alexandre Fort,Kosuke Hashimoto,Daisuke Yamada,Md Salimullah,Chaman A Keya,Alka Saxena,Alessandro Bonetti,Irina Voineagu,Nicolas Bertin,Anton Kratz,Yukihiko Noro,Chee-Hong Wong,Michiel de Hoon,Robin Andersson,Albin Sandelin,Harukazu Suzuki,Chia-Lin Wei,Haruhiko Koseki,Yuki Hasegawa,Alistair R R Forrest,Piero Carninci,Nature Genetics,Springer Science and Business Media LLC,Vol. 46,No. 6,p. 558-566,2014年06月,研究論文(学術雑誌)
  • Oncogenic potential is related to activating effect of cancer single and double somatic mutations in receptor tyrosine kinases,Kosuke Hashimoto,Igor B. Rogozin,Anna R. Panchenko,HUMAN MUTATION,WILEY-BLACKWELL,Vol. 33,No. 11,p. 1566-1575,2012年11月,研究論文(学術雑誌)
  • Caught in self-interaction: evolutionary and functional mechanisms of protein homooligomerization.,Kosuke Hashimoto,Hafumi Nishi,Stephen Bryant,Anna R Panchenko,Physical biology,IOP PUBLISHING LTD,Vol. 8,No. 3,p. 035007-035007,2011年06月,研究論文(学術雑誌)
  • Mechanisms of protein oligomerization, the critical role of insertions and deletions in maintaining different oligomeric states,Kosuke Hashimoto,Anna R. Panchenko,PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,NATL ACAD SCIENCES,Vol. 107,No. 47,p. 20352-20357,2010年11月,研究論文(学術雑誌)
  • Functional States of Homooligomers: Insights from the Evolution of Glycosyltransferases,Kosuke Hashimoto,Thomas Madej,Stephen H. Bryant,Anna R. Panchenko,JOURNAL OF MOLECULAR BIOLOGY,ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD,Vol. 399,No. 1,p. 196-206,2010年05月,研究論文(学術雑誌)
  • Comprehensive analysis of glycosyltransferases in eukaryotic genomes for structural and functional characterization of glycans,Kosuke Hashimoto,Toshiaki Tokimatsu,Shin Kawano,Akiyasu C. Yoshizawa,Shujiro Okuda,Susumu Goto,Minoru Kanehisa,CARBOHYDRATE RESEARCH,ELSEVIER SCI LTD,Vol. 344,No. 7,p. 881-887,2009年05月,研究論文(学術雑誌)
  • Mining significant tree patterns in carbohydrate sugar chains,Kosuke Hashimoto,Ichigaku Takigawa,Motoki Shiga,Minoru Kanehisa,Hiroshi Mamitsuka,BIOINFORMATICS,OXFORD UNIV PRESS,Vol. 24,No. 16,p. I167-I173,2008年08月,研究論文(学術雑誌)
  • The repertoire of desaturases and elongases reveals fatty acid variations in 56 eukaryotic genomes,Kosuke Hashimoto,Akiyasu C. Yoshizawa,Shujiro Okuda,Keiichi Kuma,Susumu Goto,Minoru Kanehisa,JOURNAL OF LIPID RESEARCH,AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC,Vol. 49,No. 1,p. 183-191,2008年01月,研究論文(学術雑誌)
  • KEGG as a glycome informatics resource,Kosuke Hashimoto,Susumu Goto,Shin Kawano,Kiyoko F. Aoki-Kinoshita,Nobuhisa Ueda,Masami Hamajima,Toshisuke Kawasaki,Minoru Kanehisa,Glycobiology,Oxford University Press (OUP),Vol. 16,No. 5,p. 63R-70R,2006年05月01日,研究論文(学術雑誌)
  • Attention network for predicting T-cell receptor–peptide binding can associate attention with interpretable protein structural properties,Kyohei Koyama,Kosuke Hashimoto,Chioko Nagao,Kenji Mizuguchi,Frontiers in Bioinformatics,Frontiers Media SA,Vol. 3,2023年12月18日,研究論文(学術雑誌)
  • Evidence-Based Prediction of Cellular Toxicity for Amorphous Silica Nanoparticles,Martin,Reiko Watanabe,Kosuke Hashimoto,Kazuma Higashisaka,Yuya Haga,Yasuo Tsutsumi,Kenji Mizuguchi,ACS Nano,2023年05月30日,研究論文(学術雑誌)
  • PCGF1-PRC1 links chromatin repression with DNA replication during hematopoietic cell lineage commitment,Junichiro Takano,Shinsuke Ito,Yixing Dong,Jafar Sharif,Yaeko Nakajima-Takagi,Taichi Umeyama,Yong-Woon Han,Kyoichi Isono,Takashi Kondo,Yusuke Iizuka,Tomohiro Miyai,Yoko Koseki,Mika Ikegaya,Mizuki Sakihara,Manabu Nakayama,Osamu Ohara,Yoshinori Hasegawa,Kosuke Hashimoto,Erik Arner,Robert J. Klose,Atsushi Iwama,Haruhiko Koseki,Tomokatsu Ikawa,Nature Communications,Springer Science and Business Media LLC,Vol. 13,No. 1,p. 7159-7159,2022年11月28日,研究論文(学術雑誌)
  • Recombination of repeat elements generates somatic complexity in human genomes.,Giovanni Pascarella,Chung Chau Hon,Kosuke Hashimoto,Annika Busch,Joachim Luginbühl,Callum Parr,Wing Hin Yip,Kazumi Abe,Anton Kratz,Alessandro Bonetti,Federico Agostini,Jessica Severin,Shigeo Murayama,Yutaka Suzuki,Stefano Gustincich,Martin Frith,Piero Carninci,Cell,Vol. 185,No. 16,p. 3025-3040,2022年08月04日,研究論文(学術雑誌)
  • DUX4 is a multifunctional factor priming human embryonic genome activation.,Sanna Vuoristo,Shruti Bhagat,Christel Hydén-Granskog,Masahito Yoshihara,Lisa Gawriyski,Eeva-Mari Jouhilahti,Vipin Ranga,Mahlet Tamirat,Mikko Huhtala,Ida Kirjanov,Sonja Nykänen,Kaarel Krjutškov,Anastassius Damdimopoulos,Jere Weltner,Kosuke Hashimoto,Gaëlle Recher,Sini Ezer,Priit Paluoja,Pauliina Paloviita,Yujiro Takegami,Ai Kanemaru,Karolina Lundin,Tomi T Airenne,Timo Otonkoski,Juha S Tapanainen,Hideya Kawaji,Yasuhiro Murakawa,Thomas R Bürglin,Markku Varjosalo,Mark S Johnson,Timo Tuuri,Shintaro Katayama,Juha Kere,iScience,Vol. 25,No. 4,p. 104137-104137,2022年04月15日,研究論文(学術雑誌)
  • FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.,Imad Abugessaisa,Jordan A Ramilowski,Marina Lizio,Jesicca Severin,Akira Hasegawa,Jayson Harshbarger,Atsushi Kondo,Shuhei Noguchi,Chi Wai Yip,Jasmine Li Ching Ooi,Michihira Tagami,Fumi Hori,Saumya Agrawal,Chung Chau Hon,Melissa Cardon,Shuya Ikeda,Hiromasa Ono,Hidemasa Bono,Masaki Kato,Kosuke Hashimoto,Alessandro Bonetti,Masaki Kato,Norio Kobayashi,Jay Shin,Michiel de Hoon,Yoshihide Hayashizaki,Piero Carninci,Hideya Kawaji,Takeya Kasukawa,Nucleic acids research,Vol. 49,No. D1,2021年01月08日,研究論文(学術雑誌)
  • Analysis of splice variants of the human protein disulfide isomerase (P4HB) gene.,Daniela Kajihara,Chung-Chau Hon,Aimi Naim Abdullah,João Wosniak Jr,Ana Iochabel S Moretti,Joice F Poloni,Diego Bonatto,Kosuke Hashimoto,Piero Carninci,Francisco R M Laurindo,BMC genomics,Vol. 21,No. 1,p. 766-766,2020年11月04日,研究論文(学術雑誌)
  • Use of Cap Analysis Gene Expression to detect human papillomavirus promoter activity patterns at different disease stages.,Ayumi Taguchi,Kazunori Nagasaka,Charles Plessy,Hiroe Nakamura,Yoshiko Kawata,Sachi Kato,Kosuke Hashimoto,Takeshi Nagamatsu,Katsutoshi Oda,Iwao Kukimoto,Kei Kawana,Piero Carninci,Yutaka Osuga,Tomoyuki Fujii,Scientific reports,Vol. 10,No. 1,p. 17991-17991,2020年10月22日,研究論文(学術雑誌)
  • Functional annotation of human long noncoding RNAs via molecular phenotyping.,Jordan A Ramilowski,Chi Wai Yip,Saumya Agrawal,Jen-Chien Chang,Yari Ciani,Ivan V Kulakovskiy,Mickaël Mendez,Jasmine Li Ching Ooi,John F Ouyang,Nick Parkinson,Andreas Petri,Leonie Roos,Jessica Severin,Kayoko Yasuzawa,Imad Abugessaisa,Altuna Akalin,Ivan V Antonov,Erik Arner,Alessandro Bonetti,Hidemasa Bono,Beatrice Borsari,Frank Brombacher,Christopher JF Cameron,Carlo Vittorio Cannistraci,Ryan Cardenas,Melissa Cardon,Howard Chang,Josée Dostie,Luca Ducoli,Alexander Favorov,Alexandre Fort,Diego Garrido,Noa Gil,Juliette Gimenez,Reto Guler,Lusy Handoko,Jayson Harshbarger,Akira Hasegawa,Yuki Hasegawa,Kosuke Hashimoto,Norihito Hayatsu,Peter Heutink,Tetsuro Hirose,Eddie L Imada,Masayoshi Itoh,Bogumil Kaczkowski,Aditi Kanhere,Emily Kawabata,Hideya Kawaji,Tsugumi Kawashima,S Thomas Kelly,Miki Kojima,Naoto Kondo,Haruhiko Koseki,Tsukasa Kouno,Anton Kratz,Mariola Kurowska-Stolarska,Andrew Tae Jun Kwon,Jeffrey Leek,Andreas Lennartsson,Marina Lizio,Fernando López-Redondo,Joachim Luginbühl,Shiori Maeda,Vsevolod J Makeev,Luigi Marchionni,Yulia A Medvedeva,Aki Minoda,Ferenc Müller,Manuel Muñoz-Aguirre,Mitsuyoshi Murata,Hiromi Nishiyori,Kazuhiro R Nitta,Shuhei Noguchi,Yukihiko Noro,Ramil Nurtdinov,Yasushi Okazaki,Valerio Orlando,Denis Paquette,Callum J C Parr,Owen J L Rackham,Patrizia Rizzu,Diego Fernando Sánchez Martinez,Albin Sandelin,Pillay Sanjana,Colin A M Semple,Youtaro Shibayama,Divya M Sivaraman,Takahiro Suzuki,Suzannah C Szumowski,Michihira Tagami,Martin S Taylor,Chikashi Terao,Malte Thodberg,Supat Thongjuea,Vidisha Tripathi,Igor Ulitsky,Roberto Verardo,Ilya E Vorontsov,Chinatsu Yamamoto,Robert S Young,J Kenneth Baillie,Alistair R R Forrest,Roderic Guigó,Michael M Hoffman,Chung Chau Hon,Takeya Kasukawa,Sakari Kauppinen,Juha Kere,Boris Lenhard,Claudio Schneider,Harukazu Suzuki,Ken Yagi,Michiel J L de Hoon,Jay W Shin,Piero Carninci,Genome research,Vol. 30,No. 7,p. 1060-1072,2020年07月,研究論文(学術雑誌)
  • RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.,Alessandro Bonetti,Federico Agostini,Ana Maria Suzuki,Kosuke Hashimoto,Giovanni Pascarella,Juliette Gimenez,Leonie Roos,Alex J Nash,Marco Ghilotti,Christopher J F Cameron,Matthew Valentine,Yulia A Medvedeva,Shuhei Noguchi,Eneritz Agirre,Kaori Kashi,Samudyata,Joachim Luginbühl,Riccardo Cazzoli,Saumya Agrawal,Nicholas M Luscombe,Mathieu Blanchette,Takeya Kasukawa,Michiel de Hoon,Erik Arner,Boris Lenhard,Charles Plessy,Gonçalo Castelo-Branco,Valerio Orlando,Piero Carninci,Nature communications,Vol. 11,No. 1,p. 1018-1018,2020年02月24日,研究論文(学術雑誌)
  • Broad Heterochromatic Domains Open in Gonocyte Development Prior to De Novo DNA Methylation.,Soichiro Yamanaka,Hidenori Nishihara,Hidehiro Toh,Luis Augusto Eijy Nagai,Kosuke Hashimoto,Sung-Joon Park,Aoi Shibuya,Ana Maria Suzuki,Yujiro Tanaka,Kenta Nakai,Piero Carninci,Hiroyuki Sasaki,Haruhiko Siomi,Developmental cell,Vol. 51,No. 1,p. 21-34,2019年10月07日,研究論文(学術雑誌)
  • Multi-year whole-blood transcriptome data for the study of onset and progression of Parkinson's Disease.,Matthew N Z Valentine,Kosuke Hashimoto,Takeshi Fukuhara,Shinji Saiki,Kei-Ichi Ishikawa,Nobutaka Hattori,Piero Carninci,Scientific data,Vol. 6,No. 1,p. 20-20,2019年04月05日,研究論文(学術雑誌)
  • OVOL2 induces mesenchymal-to-epithelial transition in fibroblasts and enhances cell-state reprogramming towards epithelial lineages.,Watanabe K,Liu Y,Noguchi S,Murray M,Chang JC,Kishima M,Nishimura H,Hashimoto K,Minoda A,Suzuki H,Scientific reports,Vol. 9,No. 1,2019年04月,研究論文(学術雑誌)
  • Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development.,Michal Pawlak,Katarzyna Z Kedzierska,Maciej Migdal,Karim Abu Nahia,Jordan A Ramilowski,Lukasz Bugajski,Kosuke Hashimoto,Aleksandra Marconi,Katarzyna Piwocka,Piero Carninci,Cecilia L Winata,Genome research,Vol. 29,No. 3,p. 506-519,2019年03月,研究論文(学術雑誌)
  • Prevention of hepatocellular carcinoma by targeting MYCN-positive liver cancer stem cells with acyclic retinoid.,Xian-Yang Qin,Harukazu Suzuki,Masao Honda,Hikari Okada,Shuichi Kaneko,Ikuyo Inoue,Etsuko Ebisui,Kosuke Hashimoto,Piero Carninci,Keita Kanki,Hideki Tatsukawa,Naoto Ishibashi,Takahiro Masaki,Tomokazu Matsuura,Hiroyuki Kagechika,Kan Toriguchi,Etsuro Hatano,Yohei Shirakami,Goshi Shiota,Masahito Shimizu,Hisataka Moriwaki,Soichi Kojima,Proceedings of the National Academy of Sciences of the United States of America,Vol. 115,No. 19,p. 4969-4974,2018年05月08日,研究論文(学術雑誌)
  • An integrated expression atlas of miRNAs and their promoters in human and mouse,Derek de Rie,Imad Abugessaisa,Tanvir Alam,Erik Arner,Peter Arner,Haitham Ashoor,Gaby Astrom,Magda Babina,Nicolas Bertin,A. Maxwell Burroughs,Ailsa J. Carlisle,Carsten O. Daub,Michael Detmar,Ruslan Deviatiiarov,Alexandre Fort,Claudia Gebhard,Daniel Goldowitz,Sven Guhl,Thomas J. Ha,Jayson Harshbarger,Akira Hasegawa,Kosuke Hashimoto,Meenhard Herlyn,Peter Heutink,Kelly J. Hitchens,Chung Chau Hon,Edward Huang,Yuri Ishizu,Chieko Kai,Takeya Kasukawa,Peter Klinken,Timo Lassmann,Charles-Henri Lecellier,Weonju Lee,Marina Lizio,Vsevolod Makeev,Anthony Mathelier,Yulia A. Medvedeva,Niklas Mejhert,Christopher J. Mungall,Shohei Noma,Mitsuhiro Ohshima,Mariko Okada-Hatakeyama,Helena Persson,Patrizia Rizzu,Filip Roudnicky,Pal Saetrom,Hiroki Sato,Jessica Severin,Jay W. Shin,Rolf K. Swoboda,Hiroshi Tarui,Hiroo Toyoda,Kristoffer Vitting-Seerup,Louise Winteringham,Yoko Yamaguchi,Kayoko Yasuzawa,Misako Yoneda,Noriko Yumoto,Susan Zabierowski,Peter G. Zhang,Christine A. Wells,Kim M. Summers,Hideya Kawaji,Albin Sandelin,Michael Rehli,Yoshihide Hayashizaki,Piero Carninci,Alistair R. R. Forrest,Michiel J. L. de Hoon,NATURE BIOTECHNOLOGY,NATURE PUBLISHING GROUP,Vol. 35,No. 9,p. 872-+,2017年09月,研究論文(学術雑誌)
  • Deficiency of multidrug resistance 2 contributes to cell transformation through oxidative stress,Ali Tebbi,Florence Levillayer,Gregory Jouvion,Laurence Fiette,Guillaume Soubigou,Hugo Varet,Nesrine Boudjadja,Stefano Cairo,Kosuke Hashimoto,Ana Maria Suzuki,Piero Carninci,Annamaria Carissimo,Diego di Bernardo,Yu Wei,CARCINOGENESIS,OXFORD UNIV PRESS,Vol. 37,No. 1,p. 39-48,2016年01月,研究論文(学術雑誌)
  • STAP cells are derived from ES cells,Daijiro Konno,Takeya Kasukawa,Kosuke Hashimoto,Takehiko Itoh,Taeko Suetsugu,Ikuo Miura,Shigeharu Wakana,Piero Carninci,Fumio Matsuzaki,NATURE,NATURE PUBLISHING GROUP,Vol. 525,No. 7570,p. E4-+,2015年09月,研究論文(学術雑誌)
  • Nuclear transcriptome profiling of induced pluripotent stem cells and embryonic stem cells identify non-coding loci resistant to reprogramming,Alexandre Fort,Daisuke Yamada,Kosuke Hashimoto,Haruhiko Koseki,Piero Carninci,CELL CYCLE,TAYLOR & FRANCIS INC,Vol. 14,No. 8,p. 1148-1155,2015年04月,研究論文(学術雑誌)
  • Characterization of novel transcripts of human papillomavirus type 16 using cap analysis gene expression technology.,Ayumi Taguchi,Kazunori Nagasaka,Kei Kawana,Kosuke Hashimoto,Rika Kusumoto-Matsuo,Charles Plessy,Miranda Thomas,Hiroe Nakamura,Alessandro Bonetti,Katsutoshi Oda,Iwao Kukimoto,Piero Carninci,Lawrence Banks,Yutaka Osuga,Tomoyuki Fujii,Journal of virology,Vol. 89,No. 4,p. 2448-52,2015年02月,研究論文(学術雑誌)
  • Evolutionary, Physicochemical, and Functional Mechanisms of Protein Homooligomerization,Hafumi Nishi,Kosuke Hashimoto,Thomas Madej,Anna R. Panchenko,OLIGOMERIZATION IN HEALTH AND DISEASE,ELSEVIER ACADEMIC PRESS INC,Vol. 117,p. 3-24,2013年,論文集(書籍)内論文
  • Cancer missense mutations alter binding properties of proteins and their interaction networks.,Hafumi Nishi,Manoj Tyagi,Shaolei Teng,Benjamin A Shoemaker,Kosuke Hashimoto,Emil Alexov,Stefan Wuchty,Anna R Panchenko,PloS one,Vol. 8,No. 6,2013年
  • Mutations that reduce its specific DNA binding inhibit high NaCl-induced nuclear localization of the osmoprotective transcription factor NFAT5,Yuichiro Izumi,Jinxi Li,Courtney Villers,Kosuke Hashimoto,Maurice B. Burg,Joan D. Ferraris,AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY,AMER PHYSIOLOGICAL SOC,Vol. 303,No. 10,p. C1061-C1069,2012年11月,研究論文(学術雑誌)
  • Large-scale mapping of human protein interactome using structural complexes,Manoj Tyagi,Kosuke Hashimoto,Benjamin A. Shoemaker,Stefan Wuchty,Anna R. Panchenko,EMBO REPORTS,NATURE PUBLISHING GROUP,Vol. 13,No. 3,p. 266-271,2012年03月,研究論文(学術雑誌)
  • Phosphorylation in Protein-Protein Binding: Effect on Stability and Function,Hafumi Nishi,Kosuke Hashimoto,Anna R. Panchenko,STRUCTURE,CELL PRESS,Vol. 19,No. 12,p. 1807-1815,2011年12月,研究論文(学術雑誌)
  • KEGG GLYCAN for integrated analysis of pathways, genes, and glycan structures,Kosuke Hashimoto,Minoru Kanehisa,Handbook of Glycomics,Elsevier Inc.,p. 197-210,2010年,論文集(書籍)内論文
  • The Global Picture of Glycosyltransferase Families in Eukaryotes,Kosuke Hashimoto,Toshiaki Tokimatsu,Susumu Goto,Minoru Kanehisa,GLYCOBIOLOGY,OXFORD UNIV PRESS INC,Vol. 18,No. 11,p. 968-968,2008年11月
  • A new efficient probabilistic model for mining labeled ordered trees applied to glycobiology,Kosuke Hashimoto,Kiyoko Flora Aoki-Kinoshita,Nobuhisa Ueda,Minoru Kanehisa,Hiroshi Mamitsuka,ACM Transactions on Knowledge Discovery from Data,Vol. 2,No. 1,2008年03月01日,研究論文(学術雑誌)
  • An improved scoring scheme for predicting glycan structures from gene expression data,Akitsugu Suga,Yoshihiro Yamanishi,Kosuke Hashimoto,Susumu Goto,Minoru Kanehisa,GENOME INFORMATICS 2007, VOL 18,IMPERIAL COLLEGE PRESS,Vol. 18,p. 237-246,2007年,研究論文(国際会議プロシーディングス)
  • The repertoire of desaturases for unsaturated fatty acid synthesis in 397 genomes.,Hashimoto K,Yoshizawa AC,Saito K,Yamada T,Kanehisa M,Genome informatics. International Conference on Genome Informatics,Japanese Society for Bioinformatics,Vol. 17,No. 1,p. 173-183,2006年
  • Prediction of glycan structures from gene expression data based on glycosyltransferase reactions,S Kawano,K Hashimoto,T Miyama,S Goto,M Kanehisa,BIOINFORMATICS,OXFORD UNIV PRESS,Vol. 21,No. 21,p. 3976-3982,2005年11月,研究論文(学術雑誌)
  • A global representation of the carbohydrate structures: a tool for the analysis of glycan.,Hashimoto K,Kawano S,Goto S,Aoki-Kinoshita KF,Kawashima M,Kanehisa M,Genome informatics. International Conference on Genome Informatics,Japanese Society for Bioinformatics,Vol. 16,No. 1,p. 214-222,2005年
  • Extraction of species-specific glycan substructures.,Hizukuri Y,Yamanishi Y,Hashimoto K,Kanehisa M,Genome informatics. International Conference on Genome Informatics,Japanese Society for Bioinformatics,Vol. 15,No. 1,p. 69-81,2004年
  • GLYCAN: The Database of Carbohydrate Structures,Hashimoto Kosuke,Hamajima Masami,Goto Susumu,Masumoto Shigekazu,Kawasima Masayuki,Kanehisa Minoru,Genome Informatics,Japanese Society for Bioinformatics,Vol. 14,p. 649-650,2003年
  • Prediction of Glycan Structures from Glycosyltransferase Expression Profiles,Kawano Shin,Okuno Yasushi,Hashimoto Kosuke,Yamamoto Harumi,Takematsu Hiromu,Kozutsumi Yasunori,Goto Susumu,Kanehisa Minoru,Genome Informatics,Japanese Society for Bioinformatics,Vol. 14,p. 304-305,2003年

MISC

  • 百寿者にみる老化後期におけるリンパ球の変化,橋本 浩介,新井 康通,実験医学,(株)羊土社,Vol. 41,No. 8,p. 1276-1279,2023年05月
  • 加速する1細胞レベルのT細胞レセプター解析-百寿者研究への応用-,橋本浩介,新井康通,月刊臨床免疫・アレルギー科,Vol. 78,No. 2,p. 194-198,2022年08月
  • トランスクリプトームデータの一般的な解析手順,橋本浩介,医学のあゆみ,Vol. 280,No. 12,p. 1267-1272,2022年03月
  • 百寿者免疫細胞の1細胞トランスクリプトーム解析,橋本浩介,新井康通,医学のあゆみ,Vol. 276,No. 10,p. 998-1002,2021年03月
  • 一細胞トランスクリプトーム解析の現況,橋本浩介,月刊臨床免疫・アレルギー科,Vol. 74,No. 1,p. 93-96,2020年
  • Epi-drivers and cancer-testis genes,Bogumil Kaczkowski,Kosuke Hashimoto,Piero Carninci,TRANSLATIONAL CANCER RESEARCH,AME PUBL CO,Vol. 5,No. 3,p. 334-336,2016年06月
  • 大規模トランスクリプトーム解析によるncRNAの発見,橋本浩介,実験医学,Vol. 33,No. 20,p. 3302-3303,2015年
  • 肝臓がんで発現するキメラnon-coding RNA,橋本浩介,実験医学,Vol. 32,No. 9,p. 1378-1379,2014年
  • KEGG GLYCANデータベースと糖鎖インフォマティクス,橋本 浩介,五斗 進,金久 實,蛋白質・核酸・酵素,共立出版(株),Vol. 53,No. 12,p. 1698-1702,2008年09月
  • KEGG 生命システム情報統合データベース,橋本 浩介,五斗 進,金久 實,実験医学,(株)羊土社,Vol. 26,No. 7,p. 1142-1147,2008年05月
  • Efficiently finding significant substructural patterns conserved in glycans,TAKIGAWA Ichigaku,HASHIMOTO Kosuke,SHIGA Motoki,KANEHISA Minoru,MAMITSUKA Hiroshi,Proc Annu Conf Jpn Soc Bioinform,Vol. 2008,2008年

報道

  • 110歳以上の人たちに特殊な免疫細胞,NHK,2019年11月
  • 110歳以上の人に特殊な免疫細胞,産経新聞,2019年11月
  • 110歳以上 特殊免疫細胞多く,読売新聞,2019年11月
  • 110歳以上 秘密は免疫細胞,朝日新聞,2019年11月

その他の活動内容

  • プレスリリース: 110歳以上の超長寿者が持つ特殊なT細胞,2019年11月 ~ 2019年11月
  • プレスリリース: B型肝炎ウイルスの詳細な転写マップを作成,2016年10月 ~ 2016年10月
  • プレスリリース: 肝細胞がんで活性化するレトロウイルス由来のRNA,2015年10月 ~ 2015年10月